Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009558

Physical Location & Seq

Genomic Coordinates Forward (+)

15765673 .. 15766943

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGTCCGTACAATTCCGTACGCTTCTCATCGTCTCGGCGATACTGAGGGTGGTTTTAATCCTCTACGGAGAGTGGCAGGACGCCCACATGGAGGTGAGGTACACAGACATCGATTACATGGTATTCTCAGACGCAGCTTCTCTAATGGTGTCTGGCAAATCCCCATTTGAAAGATCCACTTACAGATACTCTCCTCTCCTCGCCTTTCTGCTCATCCCCAATTCGATTCTCCATCGCTCTTGGGGCAAATTCATCTTCTCAGCTGCAGATTTGCTTGTGGGTTTGTTTATAAGGATGATACTGAAGCTTCGCGGGGTGCCGGAGAAATTGAGCATGATTTCTGTGATTGTTTGGCTCTTTAATCCGTTTACTTTTACGATTGGGACTCGAGGGAATTGTGAGCCAATTGTTTGTGCTTTGGTTCTTTGGGTCTTCATAAGTCTTATGAACGGACGTGTGTTACAAGCTGCATTTTGGTATGGGCTTGTTGTCCACTTCAGAATCTACCCCATTATCTATGCACTACCAATCCTTGTGATCCGATCCGCATGTGTTTCAGCCTGGTCAGAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans

Protein Analysis

193

Amino Acids

21.93

Weight (kDa)

9.3

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-U	PF06728	13 - 182	1.3e-10	GPI transamidase subunit PIG-U
Mannosyl_trans	PF05007	128 - 181	6.3e-14	Mannosyltransferase (PIG-M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22130 AT5G22130 AT5G22130
fragaria_vesca	FvH4_2g15820 FvH4_2g15820
malus_domestica	MD05G1127200.v1.1 MD10G1130600.v1.1
prunus_persica	Prupe.8G170900_v2.0.a1
pyrus_communis	pycom05g12300 pycom10g11190
rosa_chinensis	RchiOBHm_Chr6g0279191
rosa_laevigata	RLG00000013156
rosa_multiflora	Rmu_sc0014203.1_g000010 Rmu_sc0014536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00189040
rosa_rugosa	Rorug06G0123600 Rorug06G0123700
rosa_samantha	Rh6AG231900 Rh6BG236800 Rh6CG238700 Rh6DG230300
rosa_wichuraiana	Rw6G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	319
AccII	CGCG	1 cut(s)	315
AciI	CCGC	2 cut(s)	315, 549
AclWI	GGATC	3 cut(s)	171, 535, 540
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	326, 484
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	12, 22, 104
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	173
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	4 cut(s)	140, 266, 310, 470
AluI	AGCT	4 cut(s)	140, 266, 310, 470
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	171, 535, 540
Ama87I	CYCGRG	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	137, 266, 470
ApoI	RAATTY	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	149, 253, 457
BccI	CCATC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	577
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	3 cut(s)	138, 267, 471
BlsI	GCNGC	3 cut(s)	139, 268, 472
Bme1390I	CCNGG	1 cut(s)	565
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	114
BseGI	GGATG	2 cut(s)	216, 303
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	38, 144, 276
BseRI	GAGGAG	2 cut(s)	186, 191
BseXI	GCAGC	3 cut(s)	149, 253, 457
Bsh1236I	CGCG	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	323
BsiWI	CGTACG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	40
BsmBI	CGTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	176, 540, 545
BspACI	CCGC	2 cut(s)	315, 549
BspCNI	CTCAG	3 cut(s)	39, 143, 275
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	3 cut(s)	171, 535, 540
BspT107I	GGYRCC	1 cut(s)	319
BssMI	GATC	3 cut(s)	176, 540, 545
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	565
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	47, 130, 262
BstF5I	GGATG	2 cut(s)	216, 303
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	179, 543, 548
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	3 cut(s)	176, 540, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	565
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	563
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	149, 253, 457
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
Bsu15I	ATCGAT	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	216, 303
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	2 cut(s)	92, 143
Csp6I	GTAC	3 cut(s)	11, 21, 103
CviAII	CATG	4 cut(s)	91, 121, 337, 552
CviJI	RGCY	8 cut(s)	140, 266, 310, 358, 406, 470, 487, 563
CviKI_1	RGCY	8 cut(s)	140, 266, 310, 358, 406, 470, 487, 563
CviQI	GTAC	3 cut(s)	11, 21, 103
DdeI	CTNAG	3 cut(s)	47, 130, 262
DpnI	GATC	3 cut(s)	178, 542, 547
DpnII	GATC	3 cut(s)	176, 540, 545
Eco57I	CTGAAG	2 cut(s)	326, 484
Eco88I	CYCGRG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	4 cut(s)	94, 124, 340, 555
FaiI	YATR	9 cut(s)	92, 122, 293, 338, 440, 449, 483, 522, 553
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	4 cut(s)	90, 120, 336, 551
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	3 cut(s)	138, 267, 471
FokI	GGATG	2 cut(s)	203, 310
Fsp4HI	GCNGC	3 cut(s)	138, 267, 471
FspBI	CTAG	1 cut(s)	577
GluI	GCNGC	3 cut(s)	138, 267, 471
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	2 cut(s)	92, 143
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	94, 124, 340, 555
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	3 cut(s)	229, 388, 504
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	105, 372, 496
Hpy188I	TCNGA	4 cut(s)	133, 503, 545, 571
Hpy8I	GTNNAC	3 cut(s)	105, 372, 496
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	3 cut(s)	269, 473, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	47, 130, 262
HpySE526I	ACGT	1 cut(s)	457
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	94, 124, 340, 555
Kzo9I	GATC	3 cut(s)	176, 540, 545
LpnPI	CCDG	4 cut(s)	65, 141, 336, 550
Lsp1109I	GCAGC	3 cut(s)	149, 253, 457
MaeI	CTAG	1 cut(s)	577
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	462
MalI	GATC	3 cut(s)	178, 542, 547
MboI	GATC	3 cut(s)	176, 540, 545
MboII	GAAGA	2 cut(s)	250, 427
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	176
MluCI	AATT	6 cut(s)	14, 223, 251, 329, 397, 408
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	42, 74, 88, 93, 207, 212, 386
MseI	TTAA	2 cut(s)	59, 363
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	565
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	565
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	3 cut(s)	176, 540, 545
NlaIII	CATG	4 cut(s)	94, 124, 340, 555
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	17
NspI	RCATGY	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	229, 504
Pfl23II	CGTACG	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	139, 268, 472
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	563
PspLI	CGTACG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	321
PspXI	VCTCGAGB	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	12, 22, 104
RsaNI	GTAC	3 cut(s)	11, 21, 103
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	59, 363
SatI	GCNGC	3 cut(s)	138, 267, 471
Sau3AI	GATC	3 cut(s)	176, 540, 545
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	565
SetI	ASST	8 cut(s)	99, 104, 142, 268, 312, 460, 472, 578
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	6 cut(s)	14, 223, 251, 329, 397, 408
SsiI	CCGC	2 cut(s)	315, 549
SspMI	CTAG	1 cut(s)	577
StyD4I	CCNGG	1 cut(s)	563
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	114, 227, 391
TasI	AATT	6 cut(s)	14, 223, 251, 329, 397, 408
TfiI	GAWTC	2 cut(s)	229, 504
Tru1I	TTAA	2 cut(s)	59, 363
Tru9I	TTAA	2 cut(s)	59, 363
TseI	GCWGC	3 cut(s)	137, 266, 470
TspDTI	ATGAA	3 cut(s)	244, 427, 464
TspGWI	ACGGA	4 cut(s)	8, 84, 357, 468
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	555
XhoI	CTCGAG	1 cut(s)	390
XspI	CTAG	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.