Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009558

Physical Location & Seq

Genomic Coordinates Reverse (-)

26852260 .. 26854473

Gene Structure 2214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCGTCCGTACAGTTCCGTACGCTGCTGGTGGTGTCGGCGATGTTGAGGGTGGTTCTGATCGTGTACGGGGAGTGGCAGGATACCCACATGGAGGTGAGGTACACTGACATCGATTACGTGGTGTTCTCCGACGCAGCTTCACTAGTGGCTTCTGGTAAATCCCCATTTGAGAGATCAACCTACAGGTACTCTCCTCTGCTCGCGTTTTTGCTCCTACCCAATTCGATTCTTCATCGCTCTTGGGGTAAATTCATCTTCTCAGCTGCAGATTTGCTTGTGGGTTTGTTTATAAGGACCATATTGAAGCTTCGTGGGGTGCCGGAGAATTTGTCTATGATTTCTGTCATGGCTTGGCTGTTTAATCCGTTTACGTTTACGATTGGGACTCGTGGAAACTGTGAGCCCATTGTTTGTGCTTTGATTCTTTGGGTCTTTATATGTCTCATGAACGGACGTGTGTTACAAGCAGCATTTTGGTATGGACTTGTTGTCCACTTCCGAGTCTACCCCATTATCTATGCACTCCCTATTCTTCTGATTCTTGATCCTCATGTGTTTCGACCTGGTCAGAAACCTAGCCTTCAACGCTGGGATCATCGACAAGAATCACCTCAAAGCGGCTTCAAATCGAGACTTGCCTATCTGCTTCGGCCATGGTTAATTGTGAAAAGTGCATTTACACGAGACAGGATACTTTTTTCTCTCATATCTGGGGCCATATTCTTCCTTTTCACTGGTCTTTTCTATCATCTATATGGGTGGGATTTCCTGCACGAGTCACTGCTATATCATCTTACTCGTACTGATCCAAGGCACAATTTTTCCATTTATTTTTATCACATCTACCTTCAATATGAGCATAAAATCTCGGTACTGGAGAAGCTCATCTCATTTTTGCCTCAGTTGATAGTTCAGCTTGTTCTCATTCTGAGTTTCTCACAAGACCTTCCGTTCTGCTGCTTTGTGCAGACAGTGGCATTTGTGGCATTCAACAAGGTAATGACTGCACAATACTTTGTCTGGTTTTTCTGCCTCTTGCCTCTGTCACTTGCTTGGAGCAATATGAAGCTTAAATGGAAAGGCTTATCTTGCATAGCATTTTGGGTAGTTGGTCAACTTCACTGGTTGTGGTGGGGTTATATGCATGAGTTCAAGGGACGGAATGTCTTTCTTCAGCTGTGGGTGGCCGGCATCATGTTCCTATCTGCAAACACATATGTTTTGGTTTCACTCATCAATCATCACAGATGTTCTCCAGTATTCACACGATTGGATAAAACTCCCAAGGGTGCGAAGAAATTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans

Protein Analysis

437

Amino Acids

50.92

Weight (kDa)

9.65

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-U	PF06728	14 - 366	6e-12	GPI transamidase subunit PIG-U
Mannosyl_trans	PF05007	128 - 413	2.1e-70	Mannosyltransferase (PIG-M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22130 AT5G22130 AT5G22130
fragaria_vesca	FvH4_2g15820 FvH4_2g15820
malus_domestica	MD05G1127200.v1.1 MD10G1130600.v1.1
prunus_persica	Prupe.8G170900_v2.0.a1
pyrus_communis	pycom05g12300 pycom10g11190
rosa_chinensis	RchiOBHm_Chr6g0279191
rosa_laevigata	RLG00000013156
rosa_multiflora	Rmu_sc0014203.1_g000010 Rmu_sc0014536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00189040
rosa_rugosa	Rorug06G0123600 Rorug06G0123700
rosa_samantha	Rh6AG231900 Rh6BG236800 Rh6CG238700 Rh6DG230300
rosa_wichuraiana	Rw6G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	206
AciI	CCGC	1 cut(s)	621
AclWI	GGATC	3 cut(s)	542, 603, 803
AcoI	YGGCCR	2 cut(s)	653, 1188
AcsI	RAATTY	2 cut(s)	251, 328
AcuI	CTGAAG	1 cut(s)	1160
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	7 cut(s)	12, 22, 68, 104, 191, 805, 876
AfiI	CCNNNNNNNGG	2 cut(s)	94, 620
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	7 cut(s)	307, 587, 628, 854, 994, 1156, 1306
AhdI	GACNNNNNGTC	2 cut(s)	491, 1166
AhlI	ACTAGT	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	7 cut(s)	140, 266, 310, 886, 919, 1072, 1180
AluI	AGCT	7 cut(s)	140, 266, 310, 886, 919, 1072, 1180
Alw26I	GTCTC	3 cut(s)	449, 628, 681
AlwI	GGATC	3 cut(s)	542, 603, 803
AoxI	GGCC	3 cut(s)	653, 717, 1188
ApeKI	GCWGC	5 cut(s)	25, 137, 266, 470, 960
ApoI	RAATTY	2 cut(s)	251, 328
AspS9I	GGNCC	2 cut(s)	297, 717
AsuHPI	GGTGA	2 cut(s)	109, 603
AvaII	GGWCC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	408
BauI	CACGAG	3 cut(s)	390, 684, 776
BbvI	GCAGC	5 cut(s)	12, 149, 253, 482, 947
BciT130I	CCWGG	1 cut(s)	567
BciVI	GTATCC	2 cut(s)	76, 687
BcoDI	GTCTC	3 cut(s)	449, 628, 681
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	2 cut(s)	146, 579
BfmI	CTRYAG	2 cut(s)	184, 267
BfuI	GTATCC	2 cut(s)	76, 687
BisI	GCNGC	6 cut(s)	26, 138, 267, 471, 622, 961
BlsI	GCNGC	6 cut(s)	27, 139, 268, 472, 623, 962
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	297
BmeRI	GACNNNNNGTC	2 cut(s)	491, 1166
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	297, 717
BmiI	GGNNCC	2 cut(s)	321, 718
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	1203
BpmI	CTGGAG	2 cut(s)	899, 1242
Bsa29I	ATCGAT	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	656, 812, 1287
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 620
Bse118I	RCCGGY	1 cut(s)	1190
Bse1I	ACTGG	4 cut(s)	742, 882, 1130, 1259
BseBI	CCWGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	656, 812, 1287
BseLI	CCNNNNNNNGG	2 cut(s)	94, 620
BseMII	CTCAG	3 cut(s)	276, 917, 923
BseNI	ACTGG	4 cut(s)	742, 882, 1130, 1259
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	5 cut(s)	12, 149, 253, 482, 947
BseYI	CCCAGC	1 cut(s)	591
BsgI	GTGCAG	3 cut(s)	758, 989, 993
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	655, 719, 1190
BshNI	GGYRCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	323, 1191
BsiWI	CGTACG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	400, 1173
BslI	CCNNNNNNNGG	2 cut(s)	94, 620
BsmAI	GTCTC	3 cut(s)	449, 628, 681
BsmFI	GGGAC	2 cut(s)	400, 1173
BsmI	GAATGC	1 cut(s)	989
BsnI	GGCC	3 cut(s)	655, 719, 1190
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	60, 176, 547, 595, 808
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	3 cut(s)	655, 719, 1190
BspCNI	CTCAG	3 cut(s)	275, 916, 924
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	321, 718
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	3 cut(s)	542, 603, 803
BspT107I	GGYRCC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	1190
BsrI	ACTGG	4 cut(s)	742, 882, 1130, 1259
BssAI	RCCGGY	1 cut(s)	1190
BssECI	CCNNGG	3 cut(s)	656, 812, 1287
BssMI	GATC	5 cut(s)	60, 176, 547, 595, 808
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	3 cut(s)	390, 684, 776
BssT1I	CCWWGG	3 cut(s)	656, 812, 1287
Bst2BI	CACGAG	3 cut(s)	390, 684, 776
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	15, 401, 976
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	204, 1192
BstDEI	CTNAG	3 cut(s)	262, 903, 932
BstDSI	CCRYGG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	206
BstKTI	GATC	5 cut(s)	63, 179, 550, 598, 811
BstMAI	GTCTC	3 cut(s)	449, 628, 681
BstMBI	GATC	5 cut(s)	60, 176, 547, 595, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	588, 986, 1092
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	2 cut(s)	184, 267
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	5 cut(s)	12, 149, 253, 482, 947
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	2 cut(s)	76, 687
BsuRI	GGCC	3 cut(s)	655, 719, 1190
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	656
BtgZI	GCGATG	2 cut(s)	56, 221
BtrI	CACGTC	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	5 cut(s)	105, 735, 782, 981, 1123
Cac8I	GCNNGC	2 cut(s)	204, 1192
CciI	TCATGA	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	1190
Cfr13I	GGNCC	2 cut(s)	297, 717
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	143
CsiI	ACCWGGT	1 cut(s)	565
Csp6I	GTAC	7 cut(s)	11, 21, 67, 103, 190, 804, 875
CviAII	CATG	7 cut(s)	91, 349, 448, 554, 657, 1148, 1198
CviQI	GTAC	7 cut(s)	11, 21, 67, 103, 190, 804, 875
DdeI	CTNAG	3 cut(s)	262, 903, 932
DpnI	GATC	5 cut(s)	62, 178, 549, 597, 810
DpnII	GATC	5 cut(s)	60, 176, 547, 595, 808
DriI	GACNNNNNGTC	2 cut(s)	491, 1166
EaeI	YGGCCR	2 cut(s)	653, 1188
Eam1105I	GACNNNNNGTC	2 cut(s)	491, 1166
Eco130I	CCWWGG	3 cut(s)	656, 812, 1287
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	1160
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	3 cut(s)	656, 812, 1287
EcoT22I	ATGCAT	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	3 cut(s)	656, 812, 1287
FaeI	CATG	7 cut(s)	94, 352, 451, 557, 660, 1151, 1201
FaqI	GGGAC	2 cut(s)	400, 1173
FatI	CATG	7 cut(s)	90, 348, 447, 553, 656, 1147, 1197
FauNDI	CATATG	1 cut(s)	1219
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	6 cut(s)	26, 138, 267, 471, 622, 961
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	6 cut(s)	26, 138, 267, 471, 622, 961
FspBI	CTAG	2 cut(s)	146, 579
GluI	GCNGC	6 cut(s)	26, 138, 267, 471, 622, 961
GsaI	CCCAGC	1 cut(s)	595
GsuI	CTGGAG	2 cut(s)	899, 1242
HaeIII	GGCC	3 cut(s)	655, 719, 1190
HapII	CCGG	2 cut(s)	323, 1191
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	94, 352, 451, 557, 660, 1151, 1201
HincII	GTYRAC	1 cut(s)	1118
HindII	GTYRAC	1 cut(s)	1118
HindIII	AAGCTT	2 cut(s)	308, 1070
HinfI	GANTC	7 cut(s)	229, 388, 424, 504, 541, 608, 779
HpaII	CCGG	2 cut(s)	323, 1191
HphI	GGTGA	2 cut(s)	109, 603
Hpy166II	GTNNAC	7 cut(s)	67, 105, 372, 378, 496, 508, 1118
Hpy188I	TCNGA	6 cut(s)	60, 133, 503, 540, 573, 933
Hpy188III	TCNNGA	3 cut(s)	448, 545, 633
Hpy8I	GTNNAC	7 cut(s)	67, 105, 372, 378, 496, 508, 1118
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	593, 860, 959
HpyCH4III	ACNGT	3 cut(s)	15, 401, 976
HpyCH4IV	ACGT	3 cut(s)	120, 374, 457
HpyCH4V	TGCA	9 cut(s)	269, 524, 677, 775, 970, 1010, 1095, 1147, 1211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	588, 986, 1092
HpyF3I	CTNAG	3 cut(s)	262, 903, 932
HpySE526I	ACGT	3 cut(s)	120, 374, 457
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	94, 352, 451, 557, 660, 1151, 1201
KroI	GCCGGC	1 cut(s)	1190
KroNI	GCCGGC	1 cut(s)	1192
Kzo9I	GATC	5 cut(s)	60, 176, 547, 595, 808
LmnI	GCTCC	2 cut(s)	219, 1059
Lsp1109I	GCAGC	5 cut(s)	12, 149, 253, 482, 947
LweI	GCATC	1 cut(s)	1203
MabI	ACCWGGT	1 cut(s)	565
MaeI	CTAG	2 cut(s)	146, 579
MaeII	ACGT	3 cut(s)	120, 374, 457
MaeIII	GTNAC	3 cut(s)	462, 780, 1047
MalI	GATC	5 cut(s)	62, 178, 549, 597, 810
MboI	GATC	5 cut(s)	60, 176, 547, 595, 808
MboII	GAAGA	6 cut(s)	224, 250, 527, 718, 1166, 1309
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	6 cut(s)	223, 251, 328, 663, 820, 1301
MlyI	GAGTC	3 cut(s)	382, 513, 788
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	9 cut(s)	42, 88, 93, 207, 561, 624, 912, 1046, 1053
Mph1103I	ATGCAT	1 cut(s)	1149
MroNI	GCCGGC	1 cut(s)	1190
MseI	TTAA	3 cut(s)	363, 662, 1074
MslI	CAYNNNNRTG	2 cut(s)	95, 756
MspA1I	CMGCKG	2 cut(s)	266, 1180
MspI	CCGG	2 cut(s)	323, 1191
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	989
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	588, 986, 1092
NaeI	GCCGGC	1 cut(s)	1192
NcoI	CCATGG	1 cut(s)	656
NdeI	CATATG	1 cut(s)	1219
NdeII	GATC	5 cut(s)	60, 176, 547, 595, 808
NgoMIV	GCCGGC	1 cut(s)	1190
NlaIII	CATG	7 cut(s)	94, 352, 451, 557, 660, 1151, 1201
NlaIV	GGNNCC	2 cut(s)	321, 718
NmuCI	GTSAC	2 cut(s)	780, 1047
NsiI	ATGCAT	1 cut(s)	1149
PagI	TCATGA	1 cut(s)	447
PctI	GAATGC	1 cut(s)	989
PdiI	GCCGGC	1 cut(s)	1192
PfeI	GAWTC	4 cut(s)	229, 424, 541, 608
Pfl23II	CGTACG	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	567
PkrI	GCNGC	6 cut(s)	27, 139, 268, 472, 623, 962
PleI	GAGTC	3 cut(s)	382, 512, 787
PpsI	GAGTC	3 cut(s)	382, 512, 787
Ppu21I	YACGTR	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	565
PspLI	CGTACG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	321, 718
PspPI	GGNCC	2 cut(s)	297, 717
PstI	CTGCAG	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	567
PvuII	CAGCTG	2 cut(s)	266, 1180
RsaI	GTAC	7 cut(s)	12, 22, 68, 104, 191, 805, 876
RsaNI	GTAC	7 cut(s)	11, 21, 67, 103, 190, 804, 875
RseI	CAYNNNNRTG	2 cut(s)	95, 756
SaqAI	TTAA	3 cut(s)	363, 662, 1074
SatI	GCNGC	6 cut(s)	26, 138, 267, 471, 622, 961
Sau3AI	GATC	5 cut(s)	60, 176, 547, 595, 808
Sau96I	GGNCC	2 cut(s)	297, 717
SchI	GAGTC	3 cut(s)	382, 513, 788
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	408
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	1203
SfcI	CTRYAG	2 cut(s)	184, 267
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	2 cut(s)	95, 756
SpeI	ACTAGT	1 cut(s)	145
Sse9I	AATT	6 cut(s)	223, 251, 328, 663, 820, 1301
SsiI	CCGC	1 cut(s)	621
SspMI	CTAG	2 cut(s)	146, 579
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	3 cut(s)	656, 812, 1287
TaaI	ACNGT	3 cut(s)	15, 401, 976
TaiI	ACGT	3 cut(s)	123, 377, 460
TaqI	TCGA	5 cut(s)	114, 227, 562, 601, 632
TasI	AATT	6 cut(s)	223, 251, 328, 663, 820, 1301
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	4 cut(s)	229, 424, 541, 608
Tru1I	TTAA	3 cut(s)	363, 662, 1074
Tru9I	TTAA	3 cut(s)	363, 662, 1074
TscAI	CASTG	5 cut(s)	112, 742, 789, 981, 1130
TseFI	GTSAC	2 cut(s)	780, 1047
TseI	GCWGC	5 cut(s)	25, 137, 266, 470, 960
Tsp45I	GTSAC	2 cut(s)	780, 1047
TspDTI	ATGAA	4 cut(s)	224, 244, 464, 1082
TspGWI	ACGGA	5 cut(s)	8, 357, 468, 942, 1177
TspRI	CASTG	5 cut(s)	112, 742, 789, 981, 1130
Tth111I	GACNNNGTC	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	2 cut(s)	251, 328
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	2 cut(s)	146, 579
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.