Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014203.1

Orthogroup ID

OG0009558

Physical Location & Seq

Genomic Coordinates Reverse (-)

22930 .. 24118

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014203.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggcgtccgtacagttccgtacactgctggtggtctcggcgatgttgagggcggttctgatcgtgtacggggagtggcaggatacccacatggaggtgaggtacactgacatcgattacgtggtgttttcggacgcagcttcactagtggcttctggtaaatccccatttgagagatccacctacaggtactctcctctgctcgcgtttttgctcctacccaattcgattcttcatcgctcttggggtaaattcatcttctcagctgcagatttgcttgtgggtttgtttatacggaccatattgaagcttcgcggggtgccggagaatctgtctatgatttctgtgatggcttggctgtttaatccgtttacgtttacgattgggactcgtggaaactgtgagcccattgtttgtgctttgattctttgggtctttatatgtctcatgaacggtgacgtgtgttacaagcggcattttggtatggacttgttgtccacttccgagtctaccccattatctatgcatgaagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans

Protein Analysis

178

Amino Acids

20.11

Weight (kDa)

6.89

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22130 AT5G22130 AT5G22130
fragaria_vesca	FvH4_2g15820 FvH4_2g15820
malus_domestica	MD05G1127200.v1.1 MD10G1130600.v1.1
prunus_persica	Prupe.8G170900_v2.0.a1
pyrus_communis	pycom05g12300 pycom10g11190
rosa_chinensis	RchiOBHm_Chr6g0279191
rosa_laevigata	RLG00000013156
rosa_multiflora	Rmu_sc0014203.1_g000010 Rmu_sc0014536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00189040
rosa_rugosa	Rorug06G0123600 Rorug06G0123700
rosa_samantha	Rh6AG231900 Rh6BG236800 Rh6CG238700 Rh6DG230300
rosa_wichuraiana	Rw6G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	509
AccII	CGCG	2 cut(s)	206, 315
AciI	CCGC	3 cut(s)	53, 315, 472
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	12, 22, 68, 104, 191
AfiI	CCNNNNNNNGG	2 cut(s)	94, 186
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	307
AhdI	GACNNNNNGTC	1 cut(s)	493
AhlI	ACTAGT	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	460
AluBI	AGCT	4 cut(s)	140, 266, 310, 533
AluI	AGCT	4 cut(s)	140, 266, 310, 533
Alw26I	GTCTC	2 cut(s)	40, 449
AlwI	GGATC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	137, 266
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	109, 467
AvaII	GGWCC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	408
BauI	CACGAG	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	149, 253
BccI	CCATC	1 cut(s)	343
BciVI	GTATCC	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	40, 449
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	184, 267
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	3 cut(s)	138, 267, 473
BlsI	GCNGC	3 cut(s)	139, 268, 474
Bme18I	GGWCC	1 cut(s)	297
BmeRI	GACNNNNNGTC	1 cut(s)	493
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	40
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 186
BseCI	ATCGAT	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	94, 186
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	149, 253
Bsh1236I	CGCG	2 cut(s)	206, 315
BshNI	GGYRCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	94, 186
BsmAI	GTCTC	2 cut(s)	40, 449
BsmFI	GGGAC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	60, 176
BspACI	CCGC	3 cut(s)	53, 315, 472
BspCNI	CTCAG	1 cut(s)	275
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	206, 315
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	40
BssMI	GATC	2 cut(s)	60, 176
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	15, 401, 455
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	262
BstFNI	CGCG	2 cut(s)	206, 315
BstKTI	GATC	2 cut(s)	63, 179
BstMAI	GTCTC	2 cut(s)	40, 449
BstMBI	GATC	2 cut(s)	60, 176
BstSFI	CTRYAG	2 cut(s)	184, 267
BstUI	CGCG	2 cut(s)	206, 315
BstV1I	GCAGC	2 cut(s)	149, 253
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	76
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	2 cut(s)	56, 221
BtrI	CACGTC	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 105
Cac8I	GCNNGC	1 cut(s)	204
CciI	TCATGA	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	297
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	5 cut(s)	11, 21, 67, 103, 190
CviAII	CATG	3 cut(s)	91, 448, 527
CviJI	RGCY	8 cut(s)	140, 152, 266, 310, 353, 358, 406, 533
CviKI_1	RGCY	8 cut(s)	140, 152, 266, 310, 353, 358, 406, 533
CviQI	GTAC	5 cut(s)	11, 21, 67, 103, 190
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	2 cut(s)	62, 178
DpnII	GATC	2 cut(s)	60, 176
DriI	GACNNNNNGTC	1 cut(s)	493
Eam1105I	GACNNNNNGTC	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	3 cut(s)	94, 451, 530
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	3 cut(s)	90, 447, 526
FauI	CCCGC	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	3 cut(s)	138, 267, 473
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	138, 267, 473
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	3 cut(s)	138, 267, 473
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	94, 451, 530
HindIII	AAGCTT	2 cut(s)	308, 531
HinfI	GANTC	5 cut(s)	229, 328, 388, 424, 506
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	2 cut(s)	109, 467
Hpy166II	GTNNAC	7 cut(s)	23, 67, 105, 372, 378, 498, 510
Hpy188I	TCNGA	3 cut(s)	60, 133, 505
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	7 cut(s)	23, 67, 105, 372, 378, 498, 510
HpyCH4III	ACNGT	3 cut(s)	15, 401, 455
HpyCH4IV	ACGT	3 cut(s)	120, 374, 459
HpyCH4V	TGCA	2 cut(s)	269, 526
HpyF3I	CTNAG	1 cut(s)	262
HpySE526I	ACGT	3 cut(s)	120, 374, 459
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	94, 451, 530
Kzo9I	GATC	2 cut(s)	60, 176
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	5 cut(s)	14, 65, 141, 172, 336
Lsp1109I	GCAGC	2 cut(s)	149, 253
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	3 cut(s)	120, 374, 459
MaeIII	GTNAC	2 cut(s)	455, 464
MalI	GATC	2 cut(s)	62, 178
MboI	GATC	2 cut(s)	60, 176
MboII	GAAGA	2 cut(s)	224, 250
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	2 cut(s)	223, 251
MlyI	GAGTC	2 cut(s)	382, 515
MnlI	CCTC	4 cut(s)	42, 88, 93, 207
Mph1103I	ATGCAT	1 cut(s)	528
MseI	TTAA	2 cut(s)	363, 535
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	323
MvnI	CGCG	2 cut(s)	206, 315
NdeII	GATC	2 cut(s)	60, 176
NlaIII	CATG	3 cut(s)	94, 451, 530
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	455
NsiI	ATGCAT	1 cut(s)	528
PagI	TCATGA	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	229, 328, 424
PkrI	GCNGC	3 cut(s)	139, 268, 474
PleI	GAGTC	2 cut(s)	382, 514
PpsI	GAGTC	2 cut(s)	382, 514
Ppu21I	YACGTR	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	5 cut(s)	12, 22, 68, 104, 191
RsaNI	GTAC	5 cut(s)	11, 21, 67, 103, 190
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	363, 535
SatI	GCNGC	3 cut(s)	138, 267, 473
Sau3AI	GATC	2 cut(s)	60, 176
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	2 cut(s)	382, 515
SduI	GDGCHC	1 cut(s)	408
SfcI	CTRYAG	2 cut(s)	184, 267
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	145
Sse9I	AATT	2 cut(s)	223, 251
SsiI	CCGC	3 cut(s)	53, 315, 472
SspMI	CTAG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	15, 401, 455
TaiI	ACGT	3 cut(s)	123, 377, 462
TaqI	TCGA	2 cut(s)	114, 227
TasI	AATT	2 cut(s)	223, 251
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	3 cut(s)	229, 328, 424
Tru1I	TTAA	2 cut(s)	363, 535
Tru9I	TTAA	2 cut(s)	363, 535
TscAI	CASTG	2 cut(s)	30, 112
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	2 cut(s)	137, 266
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	3 cut(s)	224, 244, 464
TspGWI	ACGGA	3 cut(s)	8, 310, 357
TspRI	CASTG	2 cut(s)	30, 112
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.