Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

14703057 .. 14706825

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16930.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGTACAGGAAGCTCAAAGATGAGGATGAAGATGGAAGTTCAGCTGCCGACGACGACATCGAGAATTTGCGCGGAAAACCACTTTCTGTTGCGGCCAGTTTGGGAGGGGGACCAGTTGACCCGAAATGGAAGCGAAAGTCAATGGTTACTCTGGCTTTGACTGTTCTTACAAGCTCACAAGCGATATTGATTGTGTGGTCGAAGCGAGCTGGCAAGTATGAGTATAGTGTTACCACTGCTAATTTTTCGGTGGAGGCTTTGAAATGTGCATTGTCGCTTGCTGCTTTGGCACGAATTTGGACCAATGAAGGTGTTACTGATGATAACAGGTTGAGTACAACACTGGATGAAGTTATTGTATACCCAATTCCTGCTGCACTTTACCTAGTCAAGAACTTGCTTCAGTACTATATATTTGCATATGTGGATGCCCCGGGTTATCAAATACTGAAGAACCTGAATATTATCAGCACTGGAGTCTTATACAGAATCATACTAAAGAGGAAGTTGAGTGAGATTCAGTGGGCAGCTTTCATAATACTATGTGCAGGGTGCACTACAGCACAGCTGAACCCAAGCTCTGACCATGTTCTTCAAACTCCATTGCAAGGTTGGGTGATGGCCATTGTCATGGCACTTCTCAGTGGTTTTGCAGGAGTATACACGGAGGCAATAATTAAAAAGCGGCCGTCAAGAAATATAAATGTGCAGAACTTCTGGTTGTACGTCTTTGGGATGATATTCAACGCTGCTGCTATAGTGATTCAAGATTTTGATGCTGTGGTTAACAAGGGATTCTTCCATGGATACTCATTTATAACAGTTCTCATGATCCTCAACCATGCACTCAGTGGCATTGCTGTGTCTATGGTAATGAAGTATGCTGACAATATTGTCAAGGTGTATTCTACTTCGGTAGCAATGCTGCTTACAGCTGTTGTTTCTGTATTCCTATTTGGCTTTCATCTGTCCCTTGCCTTCTTCCTTGGCTCAACTGTTGTCTCAGTGTCGGTGTATCTGCACTCAATCGGGAAGGTGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

349

Amino Acids

38.31

Weight (kDa)

8.91

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	47 - 332	4e-53	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	821
AasI	GACNNNNNNGTC	1 cut(s)	896
AccI	GTMKAC	2 cut(s)	363, 663
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	75, 95, 688
AclWI	GGATC	1 cut(s)	829
AcoI	YGGCCR	3 cut(s)	96, 624, 689
AcsI	RAATTY	2 cut(s)	67, 297
AcuI	CTGAAG	2 cut(s)	389, 473
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	4 cut(s)	8, 340, 410, 728
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	4 cut(s)	265, 599, 748, 770
AluBI	AGCT	8 cut(s)	16, 47, 177, 212, 533, 571, 582, 938
AluI	AGCT	8 cut(s)	16, 47, 177, 212, 533, 571, 582, 938
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	1009
Alw44I	GTGCAC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	829
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	3 cut(s)	96, 624, 689
ApaLI	GTGCAC	1 cut(s)	556
ApeKI	GCWGC	7 cut(s)	47, 284, 377, 530, 752, 755, 928
ApoI	RAATTY	2 cut(s)	67, 297
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	113, 303
AsuC2I	CCSGG	2 cut(s)	437, 438
AsuHPI	GGTGA	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	113, 303
BaeGI	GKGCMC	1 cut(s)	560
BalI	TGGCCA	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	7 cut(s)	34, 271, 364, 542, 739, 742, 915
BccI	CCATC	2 cut(s)	29, 616
BceAI	ACGGC	1 cut(s)	676
BciVI	GTATCC	1 cut(s)	803
BcnI	CCSGG	2 cut(s)	437, 438
BcoDI	GTCTC	1 cut(s)	1009
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	561, 759
BfuI	GTATCC	1 cut(s)	803
BisI	GCNGC	9 cut(s)	48, 96, 285, 378, 531, 689, 753, 756, 929
BlsI	GCNGC	9 cut(s)	49, 97, 286, 379, 532, 690, 754, 757, 930
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	437, 438
Bme18I	GGWCC	2 cut(s)	113, 303
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	2 cut(s)	113, 303
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	437, 438
BmsI	GCATC	2 cut(s)	421, 769
BpmI	CTGGAG	1 cut(s)	498
BpuMI	CCSGG	2 cut(s)	437, 438
BsaJI	CCNNGG	4 cut(s)	435, 436, 805, 988
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	4 cut(s)	99, 116, 351, 481
Bse3DI	GCAATG	3 cut(s)	605, 858, 930
BseDI	CCNNGG	4 cut(s)	435, 436, 805, 988
BseGI	GGATG	4 cut(s)	34, 355, 436, 744
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	3 cut(s)	605, 858, 930
BseMII	CTCAG	3 cut(s)	658, 865, 1020
BseNI	ACTGG	4 cut(s)	99, 116, 351, 481
BseSI	GKGCMC	1 cut(s)	560
BseX3I	CGGCCG	1 cut(s)	689
BseXI	GCAGC	7 cut(s)	34, 271, 364, 542, 739, 742, 915
BsgI	GTGCAG	4 cut(s)	363, 570, 731, 1007
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	692
BshFI	GGCC	3 cut(s)	98, 626, 691
BsiEI	CGRYCG	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	2 cut(s)	126, 958
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	1 cut(s)	1009
BsmFI	GGGAC	2 cut(s)	126, 958
BsnI	GGCC	3 cut(s)	98, 626, 691
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	1 cut(s)	834
Bsp19I	CCATGG	1 cut(s)	805
BspACI	CCGC	3 cut(s)	75, 95, 688
BspANI	GGCC	3 cut(s)	98, 626, 691
BspCNI	CTCAG	3 cut(s)	657, 864, 1019
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	829
BsrDI	GCAATG	3 cut(s)	605, 858, 930
BsrI	ACTGG	4 cut(s)	99, 116, 351, 481
BssECI	CCNNGG	4 cut(s)	435, 436, 805, 988
BssMI	GATC	1 cut(s)	834
BssNAI	GTATAC	2 cut(s)	364, 664
BssT1I	CCWWGG	2 cut(s)	805, 988
Bst1107I	GTATAC	2 cut(s)	364, 664
Bst4CI	ACNGT	3 cut(s)	166, 826, 1000
BstC8I	GCNNGC	3 cut(s)	210, 214, 282
BstDEI	CTNAG	3 cut(s)	644, 851, 1006
BstDSI	CCRYGG	1 cut(s)	805
BstF5I	GGATG	4 cut(s)	34, 355, 436, 744
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	837
BstMAI	GTCTC	1 cut(s)	1009
BstMBI	GATC	1 cut(s)	834
BstMCI	CGRYCG	1 cut(s)	692
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	435, 436
BstSFI	CTRYAG	2 cut(s)	561, 759
BstSLI	GKGCMC	1 cut(s)	560
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	7 cut(s)	34, 271, 364, 542, 739, 742, 915
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstZ17I	GTATAC	2 cut(s)	364, 664
BstZI	CGGCCG	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	803
BsuRI	GGCC	3 cut(s)	98, 626, 691
BtgI	CCRYGG	1 cut(s)	805
BtsCI	GGATG	4 cut(s)	34, 355, 436, 744
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	7 cut(s)	237, 344, 474, 530, 652, 859, 1014
Cac8I	GCNNGC	3 cut(s)	210, 214, 282
CciI	TCATGA	1 cut(s)	831
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	113, 303
Cfr9I	CCCGGG	1 cut(s)	436
Csp6I	GTAC	4 cut(s)	7, 339, 409, 727
CviAII	CATG	5 cut(s)	590, 634, 806, 832, 845
CviQI	GTAC	4 cut(s)	7, 339, 409, 727
DdeI	CTNAG	3 cut(s)	644, 851, 1006
DpnI	GATC	1 cut(s)	836
DpnII	GATC	1 cut(s)	834
DraIII	CACNNNGTG	1 cut(s)	854
DrdI	GACNNNNNNGTC	1 cut(s)	896
DseDI	GACNNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	3 cut(s)	96, 624, 689
EagI	CGGCCG	1 cut(s)	689
EclXI	CGGCCG	1 cut(s)	689
Eco130I	CCWWGG	2 cut(s)	805, 988
Eco47I	GGWCC	2 cut(s)	113, 303
Eco52I	CGGCCG	1 cut(s)	689
Eco57I	CTGAAG	2 cut(s)	389, 473
Eco88I	CYCGRG	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	805, 988
ErhI	CCWWGG	2 cut(s)	805, 988
FaeI	CATG	5 cut(s)	593, 637, 809, 835, 848
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	2 cut(s)	126, 958
FatI	CATG	5 cut(s)	589, 633, 805, 831, 844
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	2 cut(s)	363, 663
Fnu4HI	GCNGC	9 cut(s)	48, 96, 285, 378, 531, 689, 753, 756, 929
FokI	GGATG	4 cut(s)	41, 362, 443, 751
Fsp4HI	GCNGC	9 cut(s)	48, 96, 285, 378, 531, 689, 753, 756, 929
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	9 cut(s)	48, 96, 285, 378, 531, 689, 753, 756, 929
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	98, 626, 691
HapII	CCGG	1 cut(s)	437
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	593, 637, 809, 835, 848
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	2 cut(s)	121, 790
HindII	GTYRAC	2 cut(s)	121, 790
HinfI	GANTC	5 cut(s)	480, 492, 520, 766, 798
HpaI	GTTAAC	1 cut(s)	790
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	5 cut(s)	121, 364, 558, 664, 790
Hpy188I	TCNGA	1 cut(s)	586
Hpy188III	TCNNGA	6 cut(s)	64, 394, 696, 770, 832, 1033
Hpy8I	GTNNAC	5 cut(s)	121, 364, 558, 664, 790
Hpy99I	CGWCG	2 cut(s)	56, 59
HpyAV	CCTTC	3 cut(s)	305, 991, 1030
HpyCH4III	ACNGT	3 cut(s)	166, 826, 1000
HpyCH4IV	ACGT	1 cut(s)	729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	644, 851, 1006
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	5 cut(s)	593, 637, 809, 835, 848
HspAI	GCGC	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	790
Kzo9I	GATC	1 cut(s)	834
Lsp1109I	GCAGC	7 cut(s)	34, 271, 364, 542, 739, 742, 915
LweI	GCATC	2 cut(s)	421, 769
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	3 cut(s)	148, 232, 316
MalI	GATC	1 cut(s)	836
MboI	GATC	1 cut(s)	834
MboII	GAAGA	5 cut(s)	44, 466, 587, 793, 976
MhlI	GDGCHC	1 cut(s)	560
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	5 cut(s)	67, 244, 297, 369, 678
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	489
MnlI	CCTC	6 cut(s)	19, 101, 250, 498, 664, 848
Mox20I	TGGCCA	1 cut(s)	626
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	2 cut(s)	681, 789
MslI	CAYNNNNRTG	2 cut(s)	632, 863
Msp20I	TGGCCA	1 cut(s)	626
MspA1I	CMGCKG	3 cut(s)	47, 571, 938
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	437, 438
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	2 cut(s)	437, 438
NcoI	CCATGG	1 cut(s)	805
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	1 cut(s)	834
NlaIII	CATG	5 cut(s)	593, 637, 809, 835, 848
NlaIV	GGNNCC	1 cut(s)	114
PagI	TCATGA	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	4 cut(s)	492, 520, 766, 798
PkrI	GCNGC	9 cut(s)	49, 97, 286, 379, 532, 690, 754, 757, 930
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PsiI	TTATAA	1 cut(s)	821
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	113, 303
PvuII	CAGCTG	3 cut(s)	47, 571, 938
RsaI	GTAC	4 cut(s)	8, 340, 410, 728
RsaNI	GTAC	4 cut(s)	7, 339, 409, 727
RseI	CAYNNNNRTG	2 cut(s)	632, 863
SaqAI	TTAA	2 cut(s)	681, 789
SatI	GCNGC	9 cut(s)	48, 96, 285, 378, 531, 689, 753, 756, 929
Sau3AI	GATC	1 cut(s)	834
Sau96I	GGNCC	2 cut(s)	113, 303
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	2 cut(s)	437, 438
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	2 cut(s)	421, 769
SfcI	CTRYAG	2 cut(s)	561, 759
SinI	GGWCC	2 cut(s)	113, 303
SmaI	CCCGGG	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	632, 863
Sse9I	AATT	5 cut(s)	67, 244, 297, 369, 678
SsiI	CCGC	3 cut(s)	75, 95, 688
SspI	AATATT	2 cut(s)	466, 895
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	435, 436
StyI	CCWWGG	2 cut(s)	805, 988
TaaI	ACNGT	3 cut(s)	166, 826, 1000
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	63, 203
TasI	AATT	5 cut(s)	67, 244, 297, 369, 678
TatI	WGTACW	3 cut(s)	6, 338, 408
TauI	GCSGC	2 cut(s)	98, 691
TfiI	GAWTC	4 cut(s)	492, 520, 766, 798
Tru1I	TTAA	2 cut(s)	681, 789
Tru9I	TTAA	2 cut(s)	681, 789
TscAI	CASTG	7 cut(s)	244, 351, 481, 530, 652, 859, 1014
TseI	GCWGC	7 cut(s)	47, 284, 377, 530, 752, 755, 928
TspDTI	ATGAA	6 cut(s)	45, 324, 366, 526, 893, 956
TspGWI	ACGGA	1 cut(s)	683
TspMI	CCCGGG	1 cut(s)	436
TspRI	CASTG	7 cut(s)	244, 351, 481, 530, 652, 859, 1014
VneI	GTGCAC	1 cut(s)	556
VpaK11BI	GGWCC	2 cut(s)	113, 303
XapI	RAATTY	2 cut(s)	67, 297
XcmI	CCANNNNNNNNNTGG	2 cut(s)	612, 851
XmaI	CCCGGG	1 cut(s)	436
XmiI	GTMKAC	2 cut(s)	363, 663
XspI	CTAG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.