Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Reverse (-)

24763179 .. 24766434

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012999

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGTACAGGAAGCTCAAAGATCAGGATGAAGATGGGAATTCAGCTGCCGACGACCTCGAAAGTTTACGGGGAAAGCCGCTTTCTGTTGCGGCCAGTTTGGGAGGGGGACCAGTAGACCGAAAATGGAAGCGAAAATCAATTGTTACTCTGGCTTTGACTGTTCTTACGAGTTCACAAGCAATATTGATTGTGTGGTCGAAGCGAGCTGGCAAGTATGAGTATAGTGTTACCACTGCTAATTTTTCGGTGGAGGCTTTGAAATGTGCATTGTCGCTTGCTGCTTTGGCACGAATCTGGAATAATGAAGGTGTTACTGACGATAACAGGTTGAGTACAACATTGGATGAAGTTATTGTATACCCGATTCCTGCAGCACTTTACCTAGTCAAAAATTTGCTTCAGTACTATATATTTGCATATGTGGATGCCCCGGGTTATCAAATACTGAAGAACCTGAATATTATCAGCACTGGGGTCTTATACAGAATCATACTCAAAAGGAAGTTAAGTGAGATTCAATGGGCTGCTTTCATAATACTATGTGCTGGGTGCACTACGGCGCAGCTGAACCCAAGTTCTGACCATGTTCTTCAAACTCCATTGCAAGGTTGGGTGATGGCCATTGTCATGGCACTTCTAAGTGGTTTTGCGGGAGTATACACCGAGGCGATAATTAAAAAGCGGCCTTCAAGAAATATAAATGTGCAGAACTTCTGGTTGTACGTCTTTGGAATGGTCTTCAATGCTGCTGCTATAGTGATTCAAGATTTTGATGCAGTGGTGAACAAGGGCTTCTTCCACGGATACTCATTTATAACAGTTCTCATGATTCTCAACCATGCACTCAGTGGCATTGCTGTGTCTATGGTAATGAAGTATGCTGACAATATTGTGAAGGTGTATTCTACTTCGGTAGCAATGCTGCTTACAGCTGTTGTTTCTGTATTCCTATTTGGCTTTCATCTGTCCCTTGCCTTTTTCCTTGGCTCAATTGTTGTCTCGGTGTCGGTGTATCTGCACTCAATCGGGAAGGTGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

348

Amino Acids

38.25

Weight (kDa)

9.23

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	46 - 341	1.4e-55	Nucleotide-sugar transporter
UAA	PF08449	117 - 342	1.4e-09	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AccI	GTMKAC	3 cut(s)	117, 360, 660
AciI	CCGC	4 cut(s)	80, 92, 653, 685
AcoI	YGGCCR	2 cut(s)	93, 621
AcsI	RAATTY	2 cut(s)	40, 394
AcuI	CTGAAG	2 cut(s)	386, 470
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	4 cut(s)	8, 337, 407, 725
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	6 cut(s)	262, 521, 596, 693, 745, 767
AluBI	AGCT	5 cut(s)	16, 47, 209, 568, 935
AluI	AGCT	5 cut(s)	16, 47, 209, 568, 935
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	1 cut(s)	1006
Alw44I	GTGCAC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	3 cut(s)	93, 621, 686
ApaLI	GTGCAC	1 cut(s)	553
ApeKI	GCWGC	8 cut(s)	47, 281, 374, 527, 565, 749, 752, 925
ApoI	RAATTY	2 cut(s)	40, 394
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	2 cut(s)	434, 435
AsuHPI	GGTGA	2 cut(s)	628, 796
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
BccI	CCATC	2 cut(s)	29, 613
BceAI	ACGGC	1 cut(s)	576
BciVI	GTATCC	1 cut(s)	800
BcnI	CCSGG	2 cut(s)	434, 435
BcoDI	GTCTC	1 cut(s)	1006
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	372, 756
BfuI	GTATCC	1 cut(s)	800
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	434, 435
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	434, 435
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	418, 766
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	733
BpuMI	CCSGG	2 cut(s)	434, 435
BsaJI	CCNNGG	5 cut(s)	432, 433, 666, 802, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	3 cut(s)	96, 113, 478
Bse3DI	GCAATG	3 cut(s)	602, 855, 927
BseDI	CCNNGG	5 cut(s)	432, 433, 666, 802, 985
BseGI	GGATG	3 cut(s)	34, 352, 433
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	3 cut(s)	602, 855, 927
BseMII	CTCAG	1 cut(s)	862
BseNI	ACTGG	3 cut(s)	96, 113, 478
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
BseYI	CCCAGC	1 cut(s)	548
BsgI	GTGCAG	2 cut(s)	728, 1004
BshFI	GGCC	3 cut(s)	95, 623, 688
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	2 cut(s)	123, 955
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	1 cut(s)	1006
BsmFI	GGGAC	2 cut(s)	123, 955
BsnI	GGCC	3 cut(s)	95, 623, 688
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	4 cut(s)	80, 92, 653, 685
BspANI	GGCC	3 cut(s)	95, 623, 688
BspCNI	CTCAG	1 cut(s)	861
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	376
BsrDI	GCAATG	3 cut(s)	602, 855, 927
BsrI	ACTGG	3 cut(s)	96, 113, 478
BssECI	CCNNGG	5 cut(s)	432, 433, 666, 802, 985
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	2 cut(s)	361, 661
BssT1I	CCWWGG	1 cut(s)	985
Bst1107I	GTATAC	2 cut(s)	361, 661
Bst4CI	ACNGT	2 cut(s)	163, 823
BstC8I	GCNNGC	3 cut(s)	207, 211, 279
BstDEI	CTNAG	2 cut(s)	641, 848
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	3 cut(s)	34, 352, 433
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	1006
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	432, 433
BstSFI	CTRYAG	2 cut(s)	372, 756
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
BstV2I	GAAGAC	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstZ17I	GTATAC	2 cut(s)	361, 661
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	3 cut(s)	95, 623, 688
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	3 cut(s)	34, 352, 433
BtsI	GCAGTG	2 cut(s)	234, 786
BtsIMutI	CAGTG	4 cut(s)	234, 471, 786, 856
Cac8I	GCNNGC	3 cut(s)	207, 211, 279
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	110
Cfr9I	CCCGGG	1 cut(s)	433
Csp6I	GTAC	4 cut(s)	7, 336, 406, 724
CviAII	CATG	4 cut(s)	587, 631, 829, 842
CviQI	GTAC	4 cut(s)	7, 336, 406, 724
DdeI	CTNAG	2 cut(s)	641, 848
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraIII	CACNNNGTG	1 cut(s)	851
EaeI	YGGCCR	2 cut(s)	93, 621
Eco130I	CCWWGG	1 cut(s)	985
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	386, 470
Eco88I	CYCGRG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	985
ErhI	CCWWGG	1 cut(s)	985
FaeI	CATG	4 cut(s)	590, 634, 832, 845
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	2 cut(s)	123, 955
FatI	CATG	4 cut(s)	586, 630, 828, 841
FauI	CCCGC	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	421
FblI	GTMKAC	3 cut(s)	117, 360, 660
FokI	GGATG	3 cut(s)	41, 359, 440
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	564
GsaI	CCCAGC	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	95, 623, 688
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	4 cut(s)	590, 634, 832, 845
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	6 cut(s)	294, 367, 489, 517, 763, 832
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	628, 796
Hpy166II	GTNNAC	7 cut(s)	68, 118, 176, 361, 555, 661, 787
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	6 cut(s)	26, 298, 693, 767, 829, 1030
Hpy8I	GTNNAC	7 cut(s)	68, 118, 176, 361, 555, 661, 787
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	302, 699, 892, 1027
HpyCH4III	ACNGT	2 cut(s)	163, 823
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	9 cut(s)	269, 374, 419, 555, 607, 709, 779, 845, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	641, 848
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	4 cut(s)	590, 634, 832, 845
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	1 cut(s)	22
Lsp1109I	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
LweI	GCATC	2 cut(s)	418, 766
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	3 cut(s)	145, 229, 313
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	5 cut(s)	44, 463, 584, 733, 790
MfeI	CAATTG	2 cut(s)	141, 993
MhlI	GDGCHC	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	6 cut(s)	40, 141, 241, 394, 675, 993
MluNI	TGGCCA	1 cut(s)	623
MnlI	CCTC	4 cut(s)	68, 98, 247, 661
Mox20I	TGGCCA	1 cut(s)	623
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	2 cut(s)	509, 678
MslI	CAYNNNNRTG	2 cut(s)	629, 860
Msp20I	TGGCCA	1 cut(s)	623
MspA1I	CMGCKG	3 cut(s)	47, 568, 935
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	434, 435
MunI	CAATTG	2 cut(s)	141, 993
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	2 cut(s)	434, 435
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	4 cut(s)	590, 634, 832, 845
NlaIV	GGNNCC	1 cut(s)	111
PagI	TCATGA	1 cut(s)	828
PfeI	GAWTC	6 cut(s)	294, 367, 489, 517, 763, 832
PsiI	TTATAA	1 cut(s)	818
PspFI	CCCAGC	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	376
PvuII	CAGCTG	3 cut(s)	47, 568, 935
RsaI	GTAC	4 cut(s)	8, 337, 407, 725
RsaNI	GTAC	4 cut(s)	7, 336, 406, 724
RseI	CAYNNNNRTG	2 cut(s)	629, 860
SaqAI	TTAA	2 cut(s)	509, 678
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	434, 435
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	2 cut(s)	418, 766
SfcI	CTRYAG	2 cut(s)	372, 756
SinI	GGWCC	1 cut(s)	110
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	2 cut(s)	629, 860
Sse9I	AATT	6 cut(s)	40, 141, 241, 394, 675, 993
SsiI	CCGC	4 cut(s)	80, 92, 653, 685
SspI	AATATT	3 cut(s)	186, 463, 892
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	432, 433
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	2 cut(s)	163, 823
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	2 cut(s)	60, 200
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	6 cut(s)	40, 141, 241, 394, 675, 993
TatI	WGTACW	3 cut(s)	6, 335, 405
TauI	GCSGC	3 cut(s)	82, 95, 688
TfiI	GAWTC	6 cut(s)	294, 367, 489, 517, 763, 832
Tru1I	TTAA	2 cut(s)	509, 678
Tru9I	TTAA	2 cut(s)	509, 678
TscAI	CASTG	4 cut(s)	241, 478, 786, 856
TseI	GCWGC	8 cut(s)	47, 281, 374, 527, 565, 749, 752, 925
TspDTI	ATGAA	6 cut(s)	45, 321, 363, 523, 890, 953
TspGWI	ACGGA	1 cut(s)	819
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	4 cut(s)	241, 478, 786, 856
VneI	GTGCAC	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	40, 394
XcmI	CCANNNNNNNNNTGG	2 cut(s)	609, 848
XmaI	CCCGGG	1 cut(s)	433
XmiI	GTMKAC	3 cut(s)	117, 360, 660
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.