Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Reverse (-)

19632923 .. 19633544

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0138800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGACAACTCGAATTGCTCCGGGAGTTAGTGAAGAATTGTTGTGGGAGCTGTTTGTTCAAACCGGTCCTGTTGTTAATATCTATGTTCCCAAAGATAGAATTACGAACCTTCATCAAGGACACGGATTCGTGAAGTTCCGAAGTGAAGATGATGCTGATTACATAGGCAATCAAGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

60

Amino Acids

6.73

Weight (kDa)

5.04

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	5 - 54	2.6e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgeI	ACCGGT	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AsiGI	ACCGGT	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	20, 63
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	62
CviJI	RGCY	1 cut(s)	49
CviKI_1	RGCY	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	65
FaiI	YATR	2 cut(s)	84, 164
HapII	CCGG	2 cut(s)	20, 63
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	2 cut(s)	20, 63
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	22, 46
LpnPI	CCDG	3 cut(s)	33, 76, 81
LweI	GCATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	44, 158
MluCI	AATT	3 cut(s)	12, 35, 99
MseI	TTAA	2 cut(s)	75, 181
MspI	CCGG	2 cut(s)	20, 63
MspR9I	CCNGG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	126
PfoI	TCCNGGA	1 cut(s)	19
PinAI	ACCGGT	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	75, 181
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	3 cut(s)	51, 111, 178
SfaNI	GCATC	1 cut(s)	142
SgeI	CNNG	8 cut(s)	21, 32, 33, 75, 80, 128, 134, 142
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	3 cut(s)	12, 35, 99
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	1 cut(s)	10
TasI	AATT	3 cut(s)	12, 35, 99
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	75, 181
Tru9I	TTAA	2 cut(s)	75, 181
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.