Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

17151976 .. 17155343

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13640.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGTACAGGAAGCTCAAAGATCAGGATCAAGACGAATCTTCAGCCCCCGGAGACCTCGAAAGCTTGCGGGGCAAGCCAATTCCTGCCATCAGCCCAGTGGAGCTCTCCAAGTGGAAGCTGAAGTCGGCTGTTACTATAGCTTTGACCGTTTTGACCAGTTCACAAGCAATATTGATTGTGTGGTCGAAGCGGGCCGGCAAGTATGAGTATAGTGTCACCACTGCAAATTTCTCGGTGGAGGCTTTGAAGTGTGCAATATCGCTCGCTGCTTTGGCACGAATCTGGAGGAATGAGGGTGTTACTGAAGATAACAGGTTGAGTGCAAAACTGGATGAAGTTATTGTATATCCCATTCCGGCATTTCTTTACCTAGTCAAGAATCTGCTTCAGTATTATATCTTTGCGTATGTGGATGCTCCGGGTTATCAAATACTGAAGAATTTCAACATTATCAGCACTGGAATTTTGTACAGAATCATACTCAAGAGAAAGTTAAGTGAGATCCAATGGGCCGCTTTCATTATACTATGTGCAGGGTGCACTACAGCACAACTAAACCCAAAATCGGACAGTGTTCTCCAAACTCCATTCCAAGGCTGGGTGATGGCCATTGTGATGGCACTTTTAAGTGGTTTTGCAGGAGTATACACTGAGGCCATAATGAAAAAGCGTCCTGCAAGGAATATAAATGTGCAGAACTTCTGGATGTACGTCTTTGGAATGGCCTTCAATGCTGTTGCTATAGTGGTTCAAGATTTTGATGCAGTGATGAACAAGGGATTCTTCCACGGATACTCTTTTATTACAGTTCTCATGATTTTCAACCATGCACTCAGTGGTATTGCTGTGTCTATGGTTATGAAGTATGCTGATAATATTGTGAAGGTGTATTCTACTTCAGTGGCAATGCTTCTTACAGCGGTTGTTTCTGTGTTTCTATTTGGCTTTCACCTATCCCTCGCCTTTTTCCTCGGCTCAACCGTTGTATCGGTTGCGGTTTATCTGCATTCAATTGGGAAGGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

344

Amino Acids

38.15

Weight (kDa)

9.36

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	648
AciI	CCGC	5 cut(s)	70, 193, 516, 923, 998
AclWI	GGATC	2 cut(s)	36, 499
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	3 cut(s)	229, 442, 465
AcuI	CTGAAG	6 cut(s)	27, 143, 327, 374, 458, 885
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	3 cut(s)	8, 473, 713
AfiI	CCNNNNNNNGG	3 cut(s)	568, 596, 601
AgsI	TTSAA	6 cut(s)	250, 448, 733, 755, 826, 1014
AluBI	AGCT	5 cut(s)	16, 66, 106, 121, 143
AluI	AGCT	5 cut(s)	16, 66, 106, 121, 143
Alw21I	GWGCWC	2 cut(s)	108, 545
Alw26I	GTCTC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	36, 499
AoxI	GGCC	5 cut(s)	195, 513, 609, 657, 726
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	3 cut(s)	229, 442, 465
Asp700I	GAANNNNTTC	1 cut(s)	443
AspS9I	GGNCC	2 cut(s)	195, 513
AsuC2I	CCSGG	2 cut(s)	51, 423
AsuHPI	GGTGA	3 cut(s)	211, 616, 944
BaeGI	GKGCMC	1 cut(s)	545
BaeI	ACNNNNGTAYC	2 cut(s)	972, 1005
BalI	TGGCCA	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	108, 545
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	3 cut(s)	98, 601, 613
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciVI	GTATCC	1 cut(s)	788
BcnI	CCSGG	2 cut(s)	51, 423
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	3 cut(s)	138, 546, 744
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	2 cut(s)	270, 516
BlsI	GCNGC	2 cut(s)	271, 517
Bme1390I	CCNGG	2 cut(s)	51, 423
BmgT120I	GGNCC	2 cut(s)	195, 513
BmrFI	CCNGG	2 cut(s)	51, 423
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	406, 754
BmuI	ACTGGG	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	51, 423
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	49, 595, 790, 973
Bsc4I	CCNNNNNNNGG	3 cut(s)	568, 596, 601
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	4 cut(s)	98, 159, 336, 466
Bse3DI	GCAATG	1 cut(s)	915
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	49, 595, 790, 973
BseGI	GGATG	3 cut(s)	340, 421, 714
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	568, 596, 601
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	2 cut(s)	645, 850
BseNI	ACTGG	4 cut(s)	98, 159, 336, 466
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	2 cut(s)	555, 716
BshFI	GGCC	5 cut(s)	197, 515, 611, 659, 728
BsiHKAI	GWGCWC	2 cut(s)	108, 545
BsiSI	CCGG	4 cut(s)	51, 198, 359, 422
BslI	CCNNNNNNNGG	3 cut(s)	568, 596, 601
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	5 cut(s)	197, 515, 611, 659, 728
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	108, 545
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	22, 28, 504
BspACI	CCGC	5 cut(s)	70, 193, 516, 923, 998
BspANI	GGCC	5 cut(s)	197, 515, 611, 659, 728
BspCNI	CTCAG	2 cut(s)	646, 849
BspHI	TCATGA	1 cut(s)	816
BspPI	GGATC	2 cut(s)	36, 499
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	915
BsrFI	RCCGGY	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	4 cut(s)	98, 159, 336, 466
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	49, 595, 790, 973
BssMI	GATC	3 cut(s)	22, 28, 504
BssNAI	GTATAC	1 cut(s)	649
BssT1I	CCWWGG	1 cut(s)	595
Bst1107I	GTATAC	1 cut(s)	649
Bst4CI	ACNGT	4 cut(s)	151, 575, 811, 985
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	5 cut(s)	68, 77, 195, 199, 267
BstDEI	CTNAG	2 cut(s)	654, 836
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	3 cut(s)	340, 421, 714
BstKTI	GATC	3 cut(s)	25, 31, 507
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	22, 28, 504
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 76, 275, 734
BstSCI	CCNGG	2 cut(s)	49, 421
BstSFI	CTRYAG	3 cut(s)	138, 546, 744
BstSLI	GKGCMC	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	504
BstZ17I	GTATAC	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	5 cut(s)	197, 515, 611, 659, 728
BtgI	CCRYGG	1 cut(s)	790
BtsCI	GGATG	3 cut(s)	340, 421, 714
BtsI	GCAGTG	2 cut(s)	222, 774
BtsIMutI	CAGTG	8 cut(s)	105, 222, 459, 580, 651, 774, 844, 909
Cac8I	GCNNGC	5 cut(s)	68, 77, 195, 199, 267
CciI	TCATGA	1 cut(s)	816
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	195, 513
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	3 cut(s)	7, 472, 712
CviAII	CATG	2 cut(s)	817, 830
CviQI	GTAC	3 cut(s)	7, 472, 712
DdeI	CTNAG	2 cut(s)	654, 836
DpnI	GATC	3 cut(s)	24, 30, 506
DpnII	GATC	3 cut(s)	22, 28, 504
DraIII	CACNNNGTG	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	6 cut(s)	27, 143, 327, 374, 458, 885
EcoICRI	GAGCTC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	2 cut(s)	820, 833
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FatI	CATG	2 cut(s)	816, 829
FauI	CCCGC	2 cut(s)	63, 186
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	2 cut(s)	270, 516
FokI	GGATG	3 cut(s)	347, 428, 721
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	270, 516
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	2 cut(s)	270, 516
GsaI	CCCAGC	1 cut(s)	604
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	5 cut(s)	197, 515, 611, 659, 728
HapII	CCGG	4 cut(s)	51, 198, 359, 422
HgaI	GACGC	1 cut(s)	662
Hin1II	CATG	2 cut(s)	820, 833
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	5 cut(s)	38, 282, 382, 477, 783
HpaII	CCGG	4 cut(s)	51, 198, 359, 422
HphI	GGTGA	3 cut(s)	211, 616, 944
Hpy166II	GTNNAC	3 cut(s)	164, 543, 649
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	8 cut(s)	26, 32, 286, 379, 487, 706, 755, 817
Hpy8I	GTNNAC	3 cut(s)	164, 543, 649
HpyAV	CCTTC	3 cut(s)	739, 880, 1015
HpyCH4III	ACNGT	4 cut(s)	151, 575, 811, 985
HpyCH4IV	ACGT	1 cut(s)	714
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 76, 275, 734
HpyF3I	CTNAG	2 cut(s)	654, 836
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	2 cut(s)	820, 833
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	22, 28, 504
LmnI	GCTCC	2 cut(s)	103, 424
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	406, 754
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	3 cut(s)	133, 217, 301
MalI	GATC	3 cut(s)	24, 30, 506
MboI	GATC	3 cut(s)	22, 28, 504
MboII	GAAGA	4 cut(s)	33, 320, 451, 778
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	108, 545
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	81, 229, 442, 465, 1014
MluNI	TGGCCA	1 cut(s)	611
MnlI	CCTC	7 cut(s)	68, 235, 282, 289, 649, 971, 983
Mox20I	TGGCCA	1 cut(s)	611
MroNI	GCCGGC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	497, 629
MslI	CAYNNNNRTG	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	4 cut(s)	51, 198, 359, 422
MspR9I	CCNGG	2 cut(s)	51, 423
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	1 cut(s)	1009
MwoI	GCNNNNNNNGC	4 cut(s)	72, 76, 275, 734
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	2 cut(s)	51, 423
NdeII	GATC	3 cut(s)	22, 28, 504
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	820, 833
NmeAIII	GCCGAG	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PctI	GAATGC	1 cut(s)	1009
PdiI	GCCGGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	5 cut(s)	38, 282, 382, 477, 783
PkrI	GCNGC	2 cut(s)	271, 517
Psp124BI	GAGCTC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	195, 513
PsuI	RGATCY	1 cut(s)	504
RsaI	GTAC	3 cut(s)	8, 473, 713
RsaNI	GTAC	3 cut(s)	7, 472, 712
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	497, 629
SatI	GCNGC	2 cut(s)	270, 516
Sau3AI	GATC	3 cut(s)	22, 28, 504
Sau96I	GGNCC	2 cut(s)	195, 513
ScrFI	CCNGG	2 cut(s)	51, 423
SduI	GDGCHC	2 cut(s)	108, 545
SfaNI	GCATC	2 cut(s)	406, 754
SfcI	CTRYAG	3 cut(s)	138, 546, 744
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	81, 229, 442, 465, 1014
SsiI	CCGC	5 cut(s)	70, 193, 516, 923, 998
SspI	AATATT	2 cut(s)	174, 880
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	49, 421
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	4 cut(s)	151, 575, 811, 985
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	2 cut(s)	60, 188
TasI	AATT	5 cut(s)	81, 229, 442, 465, 1014
TatI	WGTACW	2 cut(s)	6, 471
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	5 cut(s)	38, 282, 382, 477, 783
Tru1I	TTAA	2 cut(s)	497, 629
Tru9I	TTAA	2 cut(s)	497, 629
TscAI	CASTG	8 cut(s)	105, 229, 466, 580, 658, 774, 844, 909
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	5 cut(s)	351, 511, 680, 788, 878
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	8 cut(s)	105, 229, 466, 580, 658, 774, 844, 909
VneI	GTGCAC	1 cut(s)	541
XapI	RAATTY	3 cut(s)	229, 442, 465
XcmI	CCANNNNNNNNNTGG	3 cut(s)	97, 597, 836
XmiI	GTMKAC	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.