Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001705.1

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

11843 .. 15088

Gene Structure 3246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001705.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggagtacaggaagctcaaagatcaggatgaagatgggaattcagctgccgacgacctcgaaagtttacggggaaagccgctttctgttgcggccagtttgggagggggaccagtagaccgaaaatggaagcggaagtcaatggttactctggctttgactgttcttacgagttcacaagcaatattgattgtgtggtcgaagcgagctggcaagtatgagtatagtgttaccactgctaatttctcggtggaggctttgaagtgtgcattgtcgcttgctgctttggcacgaatctggaataatgaaggtgttactgacgataacaggttgagtacaacattggatgaagttattgtttacccgattcctgcagccctttacctagtcaaaaatttgcttcagtactatatatttgcatatgtggatgccccgggttatcaaatactgaagaacctgaatattatcagcactggggtcttatacagaatcatactcaagaggaagttaagtgagattcaatgggctgctttcataatactatgtgcagggtgcactacggcgcagctgaacccaagttctgaccatgttcttcaaactccattgcaaggttgggtgatggccattgtcatggcacttctaagtggttttgcgggagtatacaccgaggcgataattaaaaagcggccttcaagaaatataaatgtgcagaacttctggttgtacgtctttggaatggtcttcaatgctgctgctatagtgattcaagattttgatgcagtggtgaacaagggcttcttccatggatactcatttataacagttctcatgattctcaaccatgcactcagtggcattgctgtgtctatggtaatgaagtatgctgacaatattgtgaaggtgtattctacttcggtagcaatgctgcttacagctgttgtttctgtattcctatttggctttcatctgtcccttgcctttttccttggctcaattgttgtctcggtgtcggtgtatctgcactcaatcgggaaggtgcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

347

Amino Acids

38.26

Weight (kDa)

9.23

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AccI	GTMKAC	2 cut(s)	117, 660
AciI	CCGC	5 cut(s)	80, 92, 133, 653, 685
AcoI	YGGCCR	2 cut(s)	93, 621
AcsI	RAATTY	2 cut(s)	40, 394
AcuI	CTGAAG	2 cut(s)	386, 470
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	4 cut(s)	8, 337, 407, 725
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	6 cut(s)	262, 521, 596, 693, 745, 767
AluBI	AGCT	5 cut(s)	16, 47, 209, 568, 935
AluI	AGCT	5 cut(s)	16, 47, 209, 568, 935
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	1 cut(s)	1006
Alw44I	GTGCAC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	3 cut(s)	93, 621, 686
ApaLI	GTGCAC	1 cut(s)	553
ApeKI	GCWGC	8 cut(s)	47, 281, 374, 527, 565, 749, 752, 925
ApoI	RAATTY	2 cut(s)	40, 394
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	2 cut(s)	434, 435
AsuHPI	GGTGA	2 cut(s)	628, 796
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
BccI	CCATC	2 cut(s)	29, 613
BceAI	ACGGC	1 cut(s)	576
BciVI	GTATCC	1 cut(s)	800
BcnI	CCSGG	2 cut(s)	434, 435
BcoDI	GTCTC	1 cut(s)	1006
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	372, 756
BfuI	GTATCC	1 cut(s)	800
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	434, 435
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	434, 435
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	418, 766
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	733
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	2 cut(s)	434, 435
BsaJI	CCNNGG	5 cut(s)	432, 433, 666, 802, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	3 cut(s)	96, 113, 478
Bse3DI	GCAATG	3 cut(s)	602, 855, 927
BseDI	CCNNGG	5 cut(s)	432, 433, 666, 802, 985
BseGI	GGATG	3 cut(s)	34, 352, 433
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	3 cut(s)	602, 855, 927
BseMII	CTCAG	1 cut(s)	862
BseNI	ACTGG	3 cut(s)	96, 113, 478
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
BsgI	GTGCAG	3 cut(s)	567, 728, 1004
BshFI	GGCC	3 cut(s)	95, 623, 688
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	2 cut(s)	123, 955
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	1 cut(s)	1006
BsmFI	GGGAC	2 cut(s)	123, 955
BsnI	GGCC	3 cut(s)	95, 623, 688
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	802
BspACI	CCGC	5 cut(s)	80, 92, 133, 653, 685
BspANI	GGCC	3 cut(s)	95, 623, 688
BspCNI	CTCAG	1 cut(s)	861
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	376
BsrDI	GCAATG	3 cut(s)	602, 855, 927
BsrI	ACTGG	3 cut(s)	96, 113, 478
BssECI	CCNNGG	5 cut(s)	432, 433, 666, 802, 985
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	1 cut(s)	661
BssT1I	CCWWGG	2 cut(s)	802, 985
Bst1107I	GTATAC	1 cut(s)	661
Bst4CI	ACNGT	2 cut(s)	163, 823
BstC8I	GCNNGC	3 cut(s)	207, 211, 279
BstDEI	CTNAG	2 cut(s)	641, 848
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	3 cut(s)	34, 352, 433
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	1006
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	432, 433
BstSFI	CTRYAG	2 cut(s)	372, 756
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
BstV2I	GAAGAC	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	3 cut(s)	95, 623, 688
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	3 cut(s)	34, 352, 433
BtsI	GCAGTG	2 cut(s)	234, 786
BtsIMutI	CAGTG	4 cut(s)	234, 471, 786, 856
Cac8I	GCNNGC	3 cut(s)	207, 211, 279
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	110
Cfr9I	CCCGGG	1 cut(s)	433
Csp6I	GTAC	4 cut(s)	7, 336, 406, 724
CviAII	CATG	5 cut(s)	587, 631, 803, 829, 842
CviQI	GTAC	4 cut(s)	7, 336, 406, 724
DdeI	CTNAG	2 cut(s)	641, 848
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraIII	CACNNNGTG	1 cut(s)	851
EaeI	YGGCCR	2 cut(s)	93, 621
Eco130I	CCWWGG	2 cut(s)	802, 985
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	386, 470
Eco88I	CYCGRG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	802, 985
ErhI	CCWWGG	2 cut(s)	802, 985
FaeI	CATG	5 cut(s)	590, 634, 806, 832, 845
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	2 cut(s)	123, 955
FatI	CATG	5 cut(s)	586, 630, 802, 828, 841
FauI	CCCGC	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	421
FblI	GTMKAC	2 cut(s)	117, 660
FokI	GGATG	3 cut(s)	41, 359, 440
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	95, 623, 688
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	5 cut(s)	590, 634, 806, 832, 845
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	6 cut(s)	294, 367, 489, 517, 763, 832
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	628, 796
Hpy166II	GTNNAC	7 cut(s)	68, 118, 176, 361, 555, 661, 787
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	7 cut(s)	26, 298, 499, 693, 767, 829, 1030
Hpy8I	GTNNAC	7 cut(s)	68, 118, 176, 361, 555, 661, 787
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	302, 699, 892, 1027
HpyCH4III	ACNGT	2 cut(s)	163, 823
HpyCH4IV	ACGT	1 cut(s)	726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	641, 848
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	5 cut(s)	590, 634, 806, 832, 845
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	1 cut(s)	22
Lsp1109I	GCAGC	8 cut(s)	34, 268, 386, 514, 577, 736, 739, 912
LweI	GCATC	2 cut(s)	418, 766
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	3 cut(s)	145, 229, 313
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	5 cut(s)	44, 463, 584, 733, 790
MfeI	CAATTG	1 cut(s)	993
MhlI	GDGCHC	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	5 cut(s)	40, 241, 394, 675, 993
MluNI	TGGCCA	1 cut(s)	623
MnlI	CCTC	5 cut(s)	68, 98, 247, 495, 661
Mox20I	TGGCCA	1 cut(s)	623
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	2 cut(s)	509, 678
MslI	CAYNNNNRTG	2 cut(s)	629, 860
Msp20I	TGGCCA	1 cut(s)	623
MspA1I	CMGCKG	3 cut(s)	47, 568, 935
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	434, 435
MunI	CAATTG	1 cut(s)	993
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	2 cut(s)	434, 435
NcoI	CCATGG	1 cut(s)	802
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	5 cut(s)	590, 634, 806, 832, 845
NlaIV	GGNNCC	1 cut(s)	111
PagI	TCATGA	1 cut(s)	828
PfeI	GAWTC	6 cut(s)	294, 367, 489, 517, 763, 832
PsiI	TTATAA	1 cut(s)	818
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	376
PvuII	CAGCTG	3 cut(s)	47, 568, 935
RsaI	GTAC	4 cut(s)	8, 337, 407, 725
RsaNI	GTAC	4 cut(s)	7, 336, 406, 724
RseI	CAYNNNNRTG	2 cut(s)	629, 860
SaqAI	TTAA	2 cut(s)	509, 678
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	434, 435
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	2 cut(s)	418, 766
SfcI	CTRYAG	2 cut(s)	372, 756
SinI	GGWCC	1 cut(s)	110
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	2 cut(s)	629, 860
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	5 cut(s)	40, 241, 394, 675, 993
SsiI	CCGC	5 cut(s)	80, 92, 133, 653, 685
SspI	AATATT	3 cut(s)	186, 463, 892
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	432, 433
StyI	CCWWGG	2 cut(s)	802, 985
TaaI	ACNGT	2 cut(s)	163, 823
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	2 cut(s)	60, 200
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	40, 241, 394, 675, 993
TatI	WGTACW	3 cut(s)	6, 335, 405
TauI	GCSGC	3 cut(s)	82, 95, 688
TfiI	GAWTC	6 cut(s)	294, 367, 489, 517, 763, 832
Tru1I	TTAA	2 cut(s)	509, 678
Tru9I	TTAA	2 cut(s)	509, 678
TscAI	CASTG	4 cut(s)	241, 478, 786, 856
TseI	GCWGC	8 cut(s)	47, 281, 374, 527, 565, 749, 752, 925
TspDTI	ATGAA	6 cut(s)	45, 321, 363, 523, 890, 953
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	4 cut(s)	241, 478, 786, 856
VneI	GTGCAC	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	40, 394
XcmI	CCANNNNNNNNNTGG	2 cut(s)	609, 848
XmaI	CCCGGG	1 cut(s)	433
XmiI	GTMKAC	2 cut(s)	117, 660
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.