Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

35246493 .. 35250160

Gene Structure 3668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1242300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGTACAGGAAGCTCAAAGATCAGGATCAAGACGAATCTTCAGCCCCCCAAGACCTCGAAAGCTTGCGGGTCAAGCCAGTGGATCTCACCAAGTGGAAGCTCAAGTCGGCTGTTACGATAGCTCTGACCGTTTTCACGAGTTCACAAGCAATATTGATTGTGTGGTCGAAGCGGGCTGGGAAGTATGAATACAGTGTCACCACTGCAAATTTCTCGGTGGAGGCTTTGAAGTGTGCAATATCGCTTGCTGCTTTGGCACGAATCTGGAGCAATGAAGGTGTTACTGAAGATAACAGGCTGAGTGCAAAGCTGGATGAAGTTATTGTATACCCCATTCCGGCATTTCTTTACCTAATCAAGAATTTGCTTCAGTATTATATCTTTGCGTACGTGGATGCTCCGGGTTATCAAATACTGAAGAACTTCAACATTATCAGTACTGGAATTTTATACAGAATCATACTCAAGAGAAAGTTAAGTGAGATTCAATGGGCCGCTTTCATTATACTATGTGCAGGGTGCACTACGGCACAACTGAACCCAAAATCTGACAGTGTTCTCCAAACTCCATTCCAAGGCTGGGTGATGGCCATTGTGATGGCACTTTTAAGTGGTTTTGCTGGAGTATACACCGAGGCCATAATGAAAAAGCGTCCTGCAAGGAATATAAATGTGCAGAACTTCTGGATGTACGTGTTTGGCATGGCCTTCAATGCTGTTGCTATACTGGTTCAAGATTTTGATGCAGTGATGAACAAGGGATTCTTCCATGGATACTCTTTTATTACAGTTCTCATGATTTTCAACCACGCACTCAGTGGTATCGCTGTGTCTATGGTTATGAAGTATGCTGATAATATTGTGAAGGTGTATTCTACTTCAGTGGCAATGCTTCTTACAGCAGTTGTTTCTGTGTTTCTATTTGGCTTTCATCTATCCCTCGCCTTTTTCCTTGGCTCGACCGTTGTCTCGGTTGCGGTTTATCTGCATTCAATCGGGAAGGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

338

Amino Acids

37.67

Weight (kDa)

9.29

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	33 - 331	1.1e-55	Nucleotide-sugar transporter
UAA	PF08449	83 - 332	3.9e-10	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	330, 630
AciI	CCGC	4 cut(s)	70, 175, 498, 980
AclWI	GGATC	2 cut(s)	36, 93
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	3 cut(s)	211, 364, 447
AcuI	CTGAAG	5 cut(s)	27, 309, 356, 440, 867
AdeI	CACNNNGTG	2 cut(s)	96, 821
AfaI	GTAC	4 cut(s)	8, 392, 442, 695
AfiI	CCNNNNNNNGG	3 cut(s)	340, 578, 583
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	7 cut(s)	232, 430, 491, 715, 737, 808, 996
AluBI	AGCT	5 cut(s)	16, 66, 103, 125, 313
AluI	AGCT	5 cut(s)	16, 66, 103, 125, 313
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	976
Alw44I	GTGCAC	1 cut(s)	523
AlwI	GGATC	2 cut(s)	36, 93
AoxI	GGCC	4 cut(s)	495, 591, 639, 708
ApaLI	GTGCAC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	3 cut(s)	211, 364, 447
Asp700I	GAANNNNTTC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	495
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	82, 193, 598
BaeGI	GKGCMC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BauI	CACGAG	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	583, 595
BceAI	ACGGC	1 cut(s)	546
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciVI	GTATCC	1 cut(s)	770
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	976
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	2 cut(s)	252, 498
BlsI	GCNGC	2 cut(s)	253, 499
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	388, 736
BoxI	GACNNNNGTC	1 cut(s)	968
BpmI	CTGGAG	2 cut(s)	289, 645
BpuEI	CTTGAG	2 cut(s)	89, 452
BpuMI	CCSGG	1 cut(s)	405
BsaAI	YACGTR	2 cut(s)	394, 697
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	577, 636, 772, 955
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 578, 583
Bse1I	ACTGG	3 cut(s)	80, 448, 735
Bse3DI	GCAATG	2 cut(s)	280, 897
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	577, 636, 772, 955
BseGI	GGATG	3 cut(s)	322, 403, 696
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	340, 578, 583
BseMI	GCAATG	2 cut(s)	280, 897
BseMII	CTCAG	2 cut(s)	293, 832
BseNI	ACTGG	3 cut(s)	80, 448, 735
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	2 cut(s)	179, 582
BsgI	GTGCAG	2 cut(s)	537, 698
Bsh1285I	CGRYCG	1 cut(s)	966
BshFI	GGCC	4 cut(s)	497, 593, 641, 710
BsiEI	CGRYCG	1 cut(s)	966
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	2 cut(s)	341, 404
BsiWI	CGTACG	1 cut(s)	390
BslI	CCNNNNNNNGG	3 cut(s)	340, 578, 583
BsmAI	GTCTC	1 cut(s)	976
BsmI	GAATGC	1 cut(s)	991
BsnI	GGCC	4 cut(s)	497, 593, 641, 710
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	22, 28, 85
Bsp19I	CCATGG	1 cut(s)	772
BspACI	CCGC	4 cut(s)	70, 175, 498, 980
BspANI	GGCC	4 cut(s)	497, 593, 641, 710
BspCNI	CTCAG	2 cut(s)	294, 831
BspHI	TCATGA	1 cut(s)	798
BspPI	GGATC	2 cut(s)	36, 93
BsrDI	GCAATG	2 cut(s)	280, 897
BsrI	ACTGG	3 cut(s)	80, 448, 735
BssECI	CCNNGG	4 cut(s)	577, 636, 772, 955
BssMI	GATC	3 cut(s)	22, 28, 85
BssNAI	GTATAC	2 cut(s)	331, 631
BssSI	CACGAG	1 cut(s)	139
BssT1I	CCWWGG	3 cut(s)	577, 772, 955
Bst1107I	GTATAC	2 cut(s)	331, 631
Bst2BI	CACGAG	1 cut(s)	139
Bst4CI	ACNGT	5 cut(s)	133, 197, 557, 793, 967
BstBAI	YACGTR	2 cut(s)	394, 697
BstC8I	GCNNGC	3 cut(s)	68, 177, 249
BstDEI	CTNAG	2 cut(s)	302, 818
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	3 cut(s)	322, 403, 696
BstKTI	GATC	3 cut(s)	25, 31, 88
BstMAI	GTCTC	1 cut(s)	976
BstMBI	GATC	3 cut(s)	22, 28, 85
BstMCI	CGRYCG	1 cut(s)	966
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 257, 716
BstPAI	GACNNNNGTC	1 cut(s)	968
BstSCI	CCNGG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	85
BstZ17I	GTATAC	2 cut(s)	331, 631
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	4 cut(s)	497, 593, 641, 710
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	322, 403, 696
BtsI	GCAGTG	2 cut(s)	204, 756
BtsIMutI	CAGTG	7 cut(s)	87, 202, 204, 562, 756, 826, 891
Cac8I	GCNNGC	3 cut(s)	68, 177, 249
CciI	TCATGA	1 cut(s)	798
Cfr13I	GGNCC	1 cut(s)	495
CseI	GACGC	1 cut(s)	644
Csp6I	GTAC	4 cut(s)	7, 391, 441, 694
CviAII	CATG	3 cut(s)	706, 773, 799
CviQI	GTAC	4 cut(s)	7, 391, 441, 694
DdeI	CTNAG	2 cut(s)	302, 818
DpnI	GATC	3 cut(s)	24, 30, 87
DpnII	GATC	3 cut(s)	22, 28, 85
DraIII	CACNNNGTG	2 cut(s)	96, 821
EaeI	YGGCCR	1 cut(s)	591
Eco130I	CCWWGG	3 cut(s)	577, 772, 955
Eco57I	CTGAAG	5 cut(s)	27, 309, 356, 440, 867
EcoT14I	CCWWGG	3 cut(s)	577, 772, 955
ErhI	CCWWGG	3 cut(s)	577, 772, 955
FaeI	CATG	3 cut(s)	709, 776, 802
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FatI	CATG	3 cut(s)	705, 772, 798
FauI	CCCGC	2 cut(s)	63, 168
FblI	GTMKAC	2 cut(s)	330, 630
Fnu4HI	GCNGC	2 cut(s)	252, 498
FokI	GGATG	3 cut(s)	329, 410, 703
Fsp4HI	GCNGC	2 cut(s)	252, 498
GluI	GCNGC	2 cut(s)	252, 498
GsaI	CCCAGC	2 cut(s)	183, 586
GsuI	CTGGAG	2 cut(s)	289, 645
HaeIII	GGCC	4 cut(s)	497, 593, 641, 710
HapII	CCGG	2 cut(s)	341, 404
HgaI	GACGC	1 cut(s)	644
Hin1II	CATG	3 cut(s)	709, 776, 802
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	5 cut(s)	38, 264, 459, 487, 765
HpaII	CCGG	2 cut(s)	341, 404
HphI	GGTGA	3 cut(s)	82, 193, 598
Hpy166II	GTNNAC	4 cut(s)	146, 331, 525, 631
Hpy188I	TCNGA	2 cut(s)	129, 553
Hpy8I	GTNNAC	4 cut(s)	146, 331, 525, 631
HpyAV	CCTTC	4 cut(s)	272, 721, 862, 997
HpyCH4III	ACNGT	5 cut(s)	133, 197, 557, 793, 967
HpyCH4IV	ACGT	2 cut(s)	393, 696
HpyCH4V	TGCA	9 cut(s)	209, 239, 308, 518, 525, 662, 679, 749, 991
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 257, 716
HpyF3I	CTNAG	2 cut(s)	302, 818
HpySE526I	ACGT	2 cut(s)	393, 696
Hsp92II	CATG	3 cut(s)	709, 776, 802
Kzo9I	GATC	3 cut(s)	22, 28, 85
LmnI	GCTCC	2 cut(s)	270, 406
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	388, 736
MaeII	ACGT	2 cut(s)	393, 696
MaeIII	GTNAC	3 cut(s)	115, 199, 283
MalI	GATC	3 cut(s)	24, 30, 87
MboI	GATC	3 cut(s)	22, 28, 85
MboII	GAAGA	4 cut(s)	33, 302, 433, 760
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	527
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	3 cut(s)	211, 364, 447
MluNI	TGGCCA	1 cut(s)	593
MnlI	CCTC	4 cut(s)	68, 217, 631, 953
Mox20I	TGGCCA	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	2 cut(s)	479, 611
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	593
MspI	CCGG	2 cut(s)	341, 404
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	991
MwoI	GCNNNNNNNGC	3 cut(s)	76, 257, 716
NciI	CCSGG	1 cut(s)	405
NcoI	CCATGG	1 cut(s)	772
NdeII	GATC	3 cut(s)	22, 28, 85
NlaIII	CATG	3 cut(s)	709, 776, 802
NmuCI	GTSAC	1 cut(s)	199
PagI	TCATGA	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	5 cut(s)	38, 264, 459, 487, 765
Pfl23II	CGTACG	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	253, 499
Ppu21I	YACGTR	2 cut(s)	394, 697
PshAI	GACNNNNGTC	1 cut(s)	968
PspFI	CCCAGC	2 cut(s)	179, 582
PspLI	CGTACG	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	4 cut(s)	8, 392, 442, 695
RsaNI	GTAC	4 cut(s)	7, 391, 441, 694
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	479, 611
SatI	GCNGC	2 cut(s)	252, 498
Sau3AI	GATC	3 cut(s)	22, 28, 85
Sau96I	GGNCC	1 cut(s)	495
ScaI	AGTACT	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	388, 736
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	2 cut(s)	104, 467
SmoI	CTYRAG	2 cut(s)	104, 467
Sse9I	AATT	3 cut(s)	211, 364, 447
SsiI	CCGC	4 cut(s)	70, 175, 498, 980
SspI	AATATT	2 cut(s)	156, 862
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	3 cut(s)	577, 772, 955
TaaI	ACNGT	5 cut(s)	133, 197, 557, 793, 967
TaiI	ACGT	2 cut(s)	396, 699
TaqI	TCGA	3 cut(s)	60, 170, 962
TasI	AATT	3 cut(s)	211, 364, 447
TatI	WGTACW	2 cut(s)	6, 440
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	5 cut(s)	38, 264, 459, 487, 765
Tru1I	TTAA	2 cut(s)	479, 611
Tru9I	TTAA	2 cut(s)	479, 611
TscAI	CASTG	7 cut(s)	87, 202, 211, 562, 756, 826, 891
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	8 cut(s)	204, 291, 333, 493, 662, 770, 860, 923
TspRI	CASTG	7 cut(s)	87, 202, 211, 562, 756, 826, 891
VneI	GTGCAC	1 cut(s)	523
XapI	RAATTY	3 cut(s)	211, 364, 447
XcmI	CCANNNNNNNNNTGG	2 cut(s)	579, 818
XmiI	GTMKAC	2 cut(s)	330, 630
XmnI	GAANNNNTTC	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.