Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

46588208 .. 46591472

Gene Structure 3265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGTACAGGAAGCTCAAAGATCAGGATGAAGATGGGAATTCAGCTGCCGACGACCTCGAAAGTTTACGGGGAAAGCCGCTTTCTGTTGCGGCCAGTTTGGGAGGGGGACCAGTAGACCGAAAATGGAAGCGAAAGTCAATTGTTACTCTGGCTTTGACTGTTCTTACGAGTTCACAAGCAATATTGATTGTGTGGTCGAAGCGAGCTGGCAAGTATGAGTATAGTGTTACCACTGCTAATTTCTCGGTGGAGGCTTTGAAGTGTGCATTGTCGCTTGCTGCTTTGGCACGAATCTGGAATAATGAAGGTGTTACTGACGATAACAGGTTGAGTACAACATTGGATGAAGTTATTGTATACCCGATTCCTGCAGCCCTTTACCTAGTCAAAAATTTGCTTCAGTACTATATATTTGCATATGTGGATGCCCCGGGTTATCAAATACTGAAGAACCTTAATATTATCAGCACTGGGGTCTTATACAGAATCATACTCAAGAGGAAGTTAAGTGAGATTCAATGGGCTGCTTTCATAATACTATGTGCAGGGTGCACTACGGCGCAGCTGAACCCAAGGGGCTTCTTCCATGGATACTCATTTATAACAGTTCTCATGATTCTCAACCATGCACTCAGTGGCATTGCTGTGTCTATGGTAATGAAGTATGCTGACAATATTGTGAAGGTGTATTCTACTTCGGTAGCAATGCTGCTTACAGCTGTTGTTTCTGTATTCCTATTTGGCTTTCATCTGTCCCTTGCCTTTTTCCTTGGCTCAATTGTTGTCTCGGTGTCGGTGTATTTGCACTCAATCGGGAAGGTGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

276

Amino Acids

30.41

Weight (kDa)

9.3

Isoelectric Point (pI)

18.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	46 - 191	8.7e-17	Nucleotide-sugar transporter
Nuc_sug_transp	PF04142	189 - 270	3.3e-20	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccI	GTMKAC	2 cut(s)	117, 360
AciI	CCGC	2 cut(s)	80, 92
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	40, 394
AcuI	CTGAAG	2 cut(s)	386, 470
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	3 cut(s)	8, 337, 407
AgsI	TTSAA	2 cut(s)	262, 521
AluBI	AGCT	5 cut(s)	16, 47, 209, 568, 722
AluI	AGCT	5 cut(s)	16, 47, 209, 568, 722
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	1 cut(s)	793
Alw44I	GTGCAC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	553
ApeKI	GCWGC	6 cut(s)	47, 281, 374, 527, 565, 712
ApoI	RAATTY	2 cut(s)	40, 394
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	2 cut(s)	434, 435
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	6 cut(s)	34, 268, 386, 514, 577, 699
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	576
BciVI	GTATCC	1 cut(s)	587
BcnI	CCSGG	2 cut(s)	434, 435
BcoDI	GTCTC	1 cut(s)	793
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	587
BisI	GCNGC	8 cut(s)	48, 80, 93, 282, 375, 528, 566, 713
BlsI	GCNGC	8 cut(s)	49, 81, 94, 283, 376, 529, 567, 714
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	434, 435
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	434, 435
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	2 cut(s)	434, 435
BsaJI	CCNNGG	5 cut(s)	432, 433, 575, 589, 772
Bse1I	ACTGG	3 cut(s)	96, 113, 478
Bse3DI	GCAATG	2 cut(s)	642, 714
BseDI	CCNNGG	5 cut(s)	432, 433, 575, 589, 772
BseGI	GGATG	3 cut(s)	34, 352, 433
BseMI	GCAATG	2 cut(s)	642, 714
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	3 cut(s)	96, 113, 478
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	6 cut(s)	34, 268, 386, 514, 577, 699
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	2 cut(s)	123, 742
BsmAI	GTCTC	1 cut(s)	793
BsmFI	GGGAC	2 cut(s)	123, 742
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	2 cut(s)	80, 92
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	642, 714
BsrI	ACTGG	3 cut(s)	96, 113, 478
BssECI	CCNNGG	5 cut(s)	432, 433, 575, 589, 772
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	3 cut(s)	575, 589, 772
Bst1107I	GTATAC	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	163, 610
BstC8I	GCNNGC	3 cut(s)	207, 211, 279
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	34, 352, 433
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	432, 433
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	6 cut(s)	34, 268, 386, 514, 577, 699
BstZ17I	GTATAC	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	34, 352, 433
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	234, 471, 643
Cac8I	GCNNGC	3 cut(s)	207, 211, 279
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	110
Cfr9I	CCCGGG	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	7, 336, 406
CviAII	CATG	3 cut(s)	590, 616, 629
CviQI	GTAC	3 cut(s)	7, 336, 406
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraIII	CACNNNGTG	1 cut(s)	638
EaeI	YGGCCR	1 cut(s)	93
Eco130I	CCWWGG	3 cut(s)	575, 589, 772
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	386, 470
Eco88I	CYCGRG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	40
EcoT14I	CCWWGG	3 cut(s)	575, 589, 772
ErhI	CCWWGG	3 cut(s)	575, 589, 772
FaeI	CATG	3 cut(s)	593, 619, 632
FaqI	GGGAC	2 cut(s)	123, 742
FatI	CATG	3 cut(s)	589, 615, 628
FauNDI	CATATG	1 cut(s)	421
FblI	GTMKAC	2 cut(s)	117, 360
Fnu4HI	GCNGC	8 cut(s)	48, 80, 93, 282, 375, 528, 566, 713
FokI	GGATG	3 cut(s)	41, 359, 440
Fsp4HI	GCNGC	8 cut(s)	48, 80, 93, 282, 375, 528, 566, 713
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	8 cut(s)	48, 80, 93, 282, 375, 528, 566, 713
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	3 cut(s)	593, 619, 632
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	5 cut(s)	294, 367, 489, 517, 619
HpaII	CCGG	1 cut(s)	434
Hpy166II	GTNNAC	5 cut(s)	68, 118, 176, 361, 555
Hpy188III	TCNNGA	5 cut(s)	26, 298, 499, 616, 817
Hpy8I	GTNNAC	5 cut(s)	68, 118, 176, 361, 555
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	302, 679, 814
HpyCH4III	ACNGT	2 cut(s)	163, 610
HpyCH4V	TGCA	7 cut(s)	269, 374, 419, 548, 555, 632, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	635
Hsp92II	CATG	3 cut(s)	593, 619, 632
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	1 cut(s)	22
Lsp1109I	GCAGC	6 cut(s)	34, 268, 386, 514, 577, 699
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	145, 229, 313
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	44, 463, 577
MfeI	CAATTG	2 cut(s)	141, 780
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	5 cut(s)	40, 141, 241, 394, 780
MnlI	CCTC	4 cut(s)	68, 98, 247, 495
MseI	TTAA	2 cut(s)	459, 509
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	3 cut(s)	47, 568, 722
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	434, 435
MunI	CAATTG	2 cut(s)	141, 780
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	2 cut(s)	434, 435
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	593, 619, 632
NlaIV	GGNNCC	1 cut(s)	111
PagI	TCATGA	1 cut(s)	615
PfeI	GAWTC	5 cut(s)	294, 367, 489, 517, 619
PkrI	GCNGC	8 cut(s)	49, 81, 94, 283, 376, 529, 567, 714
PsiI	TTATAA	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	376
PvuII	CAGCTG	3 cut(s)	47, 568, 722
RsaI	GTAC	3 cut(s)	8, 337, 407
RsaNI	GTAC	3 cut(s)	7, 336, 406
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	2 cut(s)	459, 509
SatI	GCNGC	8 cut(s)	48, 80, 93, 282, 375, 528, 566, 713
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	434, 435
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	110
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	5 cut(s)	40, 141, 241, 394, 780
SsiI	CCGC	2 cut(s)	80, 92
SspI	AATATT	3 cut(s)	186, 463, 679
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	432, 433
StyI	CCWWGG	3 cut(s)	575, 589, 772
TaaI	ACNGT	2 cut(s)	163, 610
TaqI	TCGA	2 cut(s)	60, 200
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	40, 141, 241, 394, 780
TatI	WGTACW	3 cut(s)	6, 335, 405
TauI	GCSGC	2 cut(s)	82, 95
TfiI	GAWTC	5 cut(s)	294, 367, 489, 517, 619
Tru1I	TTAA	2 cut(s)	459, 509
Tru9I	TTAA	2 cut(s)	459, 509
TscAI	CASTG	3 cut(s)	241, 478, 643
TseI	GCWGC	6 cut(s)	47, 281, 374, 527, 565, 712
TspDTI	ATGAA	6 cut(s)	45, 321, 363, 523, 677, 740
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	3 cut(s)	241, 478, 643
VneI	GTGCAC	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	40, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XmaI	CCCGGG	1 cut(s)	433
XmiI	GTMKAC	2 cut(s)	117, 360
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.