Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

27154815 .. 27158673

Gene Structure 3859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1141000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGTACAGGAAACTCAAAGATCAGGATCAAGACGAATCTTCAGCCTCCGAAGACCTCGAAAGCTTGCGGGGCAAGCCAATTCCTGCCGTCAGCCCAGTGGAGCTCTCCAAGTGGAAGCTCAAGTCGGCTGTTACTATAGCTTTGACCGTTTTGACCAGTTCACAAGCAATATTGATTGTGTGGTCGAAAAGGGCCGGCAAGTATGAGTATAGTGTCACCACTGCAAATTTCTCGGTGGAGGCTTTGAAGTGTGCAATATCGCTCGCTGCTTTGGCGCGAATCTGGAGGAATGAGGGTGTTACTGAAGATAACAGGTTGAGTGCAAAACTGGATGAAGTTATTGTATATCCCATTCCGGCATTTCTTTACCTAGTCAAGAATCTGCTTCAGTATTATATCTTTGCGTATGTGGATGCTCCGGGTTATCAAATACTGAAGAATTTCAACATTATCAGCACTGGAATTTTGTACAGAATCATACTCAAGAGAAAGTTAAGTGAGATCCAATGGGCCGCTTTCATTATCCTATGTGCAGGGTGCACTACAGCACAACTAAACCCAAAATCGGACAGTGTTCTCCAAACTCCATTCCAAGGCTGGGTGATGGCCATTGTGATGGCACTTTTAAGTGGTTTTGCAGGAGTATACACTGAGGCCATAATGAAAAAGCGTCCTGCAAGGAATATAAATGTGCAGAACTTCTGGTTGTACGTCTTTGGAATGGCCTTCAATGCTGTTGCTATAGTGGTTCAAGATTTTGATGCAGTGATGAACAAGGGATTCTTCCATGGATACTCTTTTATTACAGTTCTCATGATTTTCAACCATGCACTCAGTGGTATTGCTGTGTCTATGGTTATGAAGTATGCTGATAATATTGTGAAGGTGTATTCTACTTCAGTGGCAATGCTTCTTACAGCAGTTGTTTCTGTGTTTCTATTTGGCTTTCACCTATCCCTCGCCTTTTTCCTCGGCTCAACCGTTGTCTCGGTTGCGGTTTATCTGCATTCAATTGGGAAGGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

344

Amino Acids

38.18

Weight (kDa)

9.29

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	40 - 337	3e-56	Nucleotide-sugar transporter
UAA	PF08449	96 - 338	1.4e-09	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	648
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	70, 516, 998
AclWI	GGATC	2 cut(s)	36, 499
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	3 cut(s)	229, 442, 465
AcuI	CTGAAG	5 cut(s)	27, 327, 374, 458, 885
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	3 cut(s)	8, 473, 713
AfiI	CCNNNNNNNGG	3 cut(s)	568, 596, 601
AgsI	TTSAA	6 cut(s)	250, 448, 733, 755, 826, 1014
AluBI	AGCT	4 cut(s)	66, 106, 121, 143
AluI	AGCT	4 cut(s)	66, 106, 121, 143
Alw21I	GWGCWC	2 cut(s)	108, 545
Alw26I	GTCTC	1 cut(s)	994
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	36, 499
AoxI	GGCC	5 cut(s)	195, 513, 609, 657, 726
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	3 cut(s)	229, 442, 465
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	195, 513
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	3 cut(s)	211, 616, 944
BaeGI	GKGCMC	1 cut(s)	545
BalI	TGGCCA	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	108, 545
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	601, 613
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciVI	GTATCC	1 cut(s)	788
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	994
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	3 cut(s)	138, 546, 744
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	2 cut(s)	270, 516
BlsI	GCNGC	2 cut(s)	271, 517
Bme1390I	CCNGG	1 cut(s)	423
BmgT120I	GGNCC	2 cut(s)	195, 513
BmrFI	CCNGG	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	406, 754
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	307
BpuEI	CTTGAG	2 cut(s)	107, 470
BpuMI	CCSGG	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	595, 790, 973
Bsc4I	CCNNNNNNNGG	3 cut(s)	568, 596, 601
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	4 cut(s)	98, 159, 336, 466
Bse3DI	GCAATG	1 cut(s)	915
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	595, 790, 973
BseGI	GGATG	2 cut(s)	340, 421
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	3 cut(s)	568, 596, 601
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	2 cut(s)	645, 850
BseNI	ACTGG	4 cut(s)	98, 159, 336, 466
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	2 cut(s)	555, 716
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	5 cut(s)	197, 515, 611, 659, 728
BsiHKAI	GWGCWC	2 cut(s)	108, 545
BsiSI	CCGG	3 cut(s)	198, 359, 422
BslI	CCNNNNNNNGG	3 cut(s)	568, 596, 601
BsmAI	GTCTC	1 cut(s)	994
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	5 cut(s)	197, 515, 611, 659, 728
Bsp1286I	GDGCHC	2 cut(s)	108, 545
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	22, 28, 504
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	3 cut(s)	70, 516, 998
BspANI	GGCC	5 cut(s)	197, 515, 611, 659, 728
BspCNI	CTCAG	2 cut(s)	646, 849
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	816
BspPI	GGATC	2 cut(s)	36, 499
BsrDI	GCAATG	1 cut(s)	915
BsrFI	RCCGGY	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	4 cut(s)	98, 159, 336, 466
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	595, 790, 973
BssMI	GATC	3 cut(s)	22, 28, 504
BssNAI	GTATAC	1 cut(s)	649
BssT1I	CCWWGG	2 cut(s)	595, 790
Bst1107I	GTATAC	1 cut(s)	649
Bst4CI	ACNGT	4 cut(s)	151, 575, 811, 985
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	4 cut(s)	68, 77, 199, 267
BstDEI	CTNAG	2 cut(s)	654, 836
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	2 cut(s)	340, 421
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	25, 31, 507
BstMAI	GTCTC	1 cut(s)	994
BstMBI	GATC	3 cut(s)	22, 28, 504
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 76, 275, 734
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	3 cut(s)	138, 546, 744
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	504
BstZ17I	GTATAC	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	5 cut(s)	197, 515, 611, 659, 728
BtgI	CCRYGG	1 cut(s)	790
BtsCI	GGATG	2 cut(s)	340, 421
BtsI	GCAGTG	2 cut(s)	222, 774
BtsIMutI	CAGTG	8 cut(s)	105, 222, 459, 580, 651, 774, 844, 909
Cac8I	GCNNGC	4 cut(s)	68, 77, 199, 267
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	195, 513
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	3 cut(s)	7, 472, 712
CviAII	CATG	3 cut(s)	791, 817, 830
CviQI	GTAC	3 cut(s)	7, 472, 712
DdeI	CTNAG	2 cut(s)	654, 836
DpnI	GATC	3 cut(s)	24, 30, 506
DpnII	GATC	3 cut(s)	22, 28, 504
DraIII	CACNNNGTG	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	595, 790
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	5 cut(s)	27, 327, 374, 458, 885
EcoICRI	GAGCTC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	595, 790
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	595, 790
FaeI	CATG	3 cut(s)	794, 820, 833
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FatI	CATG	3 cut(s)	790, 816, 829
FauI	CCCGC	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	2 cut(s)	270, 516
FokI	GGATG	2 cut(s)	347, 428
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	270, 516
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	270, 516
GsaI	CCCAGC	1 cut(s)	604
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	5 cut(s)	197, 515, 611, 659, 728
HapII	CCGG	3 cut(s)	198, 359, 422
HgaI	GACGC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	794, 820, 833
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	5 cut(s)	38, 282, 382, 477, 783
HpaII	CCGG	3 cut(s)	198, 359, 422
HphI	GGTGA	3 cut(s)	211, 616, 944
Hpy166II	GTNNAC	3 cut(s)	164, 543, 649
Hpy188I	TCNGA	2 cut(s)	52, 571
Hpy188III	TCNNGA	7 cut(s)	26, 32, 286, 379, 487, 755, 817
Hpy8I	GTNNAC	3 cut(s)	164, 543, 649
HpyAV	CCTTC	3 cut(s)	739, 880, 1015
HpyCH4III	ACNGT	4 cut(s)	151, 575, 811, 985
HpyCH4IV	ACGT	1 cut(s)	714
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 76, 275, 734
HpyF3I	CTNAG	2 cut(s)	654, 836
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	3 cut(s)	794, 820, 833
HspAI	GCGC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	22, 28, 504
LmnI	GCTCC	2 cut(s)	103, 424
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	406, 754
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	3 cut(s)	133, 217, 301
MalI	GATC	3 cut(s)	24, 30, 506
MboI	GATC	3 cut(s)	22, 28, 504
MboII	GAAGA	5 cut(s)	33, 65, 320, 451, 778
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	108, 545
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	81, 229, 442, 465, 1014
MluNI	TGGCCA	1 cut(s)	611
MnlI	CCTC	8 cut(s)	58, 68, 235, 282, 289, 649, 971, 983
Mox20I	TGGCCA	1 cut(s)	611
MroNI	GCCGGC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	497, 629
MslI	CAYNNNNRTG	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	611
MspI	CCGG	3 cut(s)	198, 359, 422
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	1 cut(s)	1009
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	4 cut(s)	72, 76, 275, 734
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	423
NcoI	CCATGG	1 cut(s)	790
NdeII	GATC	3 cut(s)	22, 28, 504
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	3 cut(s)	794, 820, 833
NmeAIII	GCCGAG	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PctI	GAATGC	1 cut(s)	1009
PdiI	GCCGGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	5 cut(s)	38, 282, 382, 477, 783
PkrI	GCNGC	2 cut(s)	271, 517
Psp124BI	GAGCTC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	195, 513
PsuI	RGATCY	1 cut(s)	504
RsaI	GTAC	3 cut(s)	8, 473, 713
RsaNI	GTAC	3 cut(s)	7, 472, 712
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	497, 629
SatI	GCNGC	2 cut(s)	270, 516
Sau3AI	GATC	3 cut(s)	22, 28, 504
Sau96I	GGNCC	2 cut(s)	195, 513
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	108, 545
SfaNI	GCATC	2 cut(s)	406, 754
SfcI	CTRYAG	3 cut(s)	138, 546, 744
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	2 cut(s)	122, 485
SmoI	CTYRAG	2 cut(s)	122, 485
Sse9I	AATT	5 cut(s)	81, 229, 442, 465, 1014
SsiI	CCGC	3 cut(s)	70, 516, 998
SspI	AATATT	2 cut(s)	174, 880
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	595, 790
TaaI	ACNGT	4 cut(s)	151, 575, 811, 985
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	2 cut(s)	60, 188
TasI	AATT	5 cut(s)	81, 229, 442, 465, 1014
TatI	WGTACW	2 cut(s)	6, 471
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	5 cut(s)	38, 282, 382, 477, 783
Tru1I	TTAA	2 cut(s)	497, 629
Tru9I	TTAA	2 cut(s)	497, 629
TscAI	CASTG	8 cut(s)	105, 229, 466, 580, 658, 774, 844, 909
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	5 cut(s)	351, 511, 680, 788, 878
TspRI	CASTG	8 cut(s)	105, 229, 466, 580, 658, 774, 844, 909
VneI	GTGCAC	1 cut(s)	541
XapI	RAATTY	3 cut(s)	229, 442, 465
XcmI	CCANNNNNNNNNTGG	2 cut(s)	597, 836
XmiI	GTMKAC	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.