Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

18143751 .. 18147530

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGTACAGGAAGCTCAAAGATCAGGATCAAGATGGAGCTTCAGCTCCTGAAGACGTCGAGAGTTTAAGGGGAAAGCCTATTTCTGCTGTGGGTCCAGTTGAGCGGACCAAGTGGAAGCGCAAGTCAATTGTTACTCTGGCTTTGACTTTCCTTACGAGTTCACAAGCTATATTGATTGTGTGGTCGAAGAGGGCTGGGAAATATGAGTATAGTGTTACCACTGCAAATTTCTCGGTGGAGGCTTTGAAGTGTGCCTTGTCACTAGCTGCTTTGGCACGAATCTGGAGCAATGAAGGTGTTACTGAGGATAACAGGTTGAGTACAACACTGGATGAAGTTGGTGTATACCCCATTCCGGCATTGCTTTACCTAGTCAAGAATCTGCTTCAGTATTATATCTTCGCATATGTGGATGCTCCGGGTTATCAAATACTGAAGAACCTGAACATTATCAGTACGGGTGTTTTATACAGAATCATACTAAAGAGAAAGTTAAGTGAGATTCAATGGGCTGCTTTCATTATACTATGTGCAGGGTGCACTACTGCACAACTGAACCCAAAATCTGATAGTGTTCTCCAAACTCCATTACAAGGTTGGGTGATGGCCATTGTAATGGCACTTTTAAGTGGTTTTGCTGGAGTATACACCGAGGCCATTATTAAAAAGCGCCCTTCAAGGAATATAAATGTGCAGAACTTCTGGTTGTACGTATTTGGAATGGCCTTCAATGCTGTTGCTATAGTGATTCAAGATTTTGATGCAGTGATGAACAAGGGATTCTTCCATGGATACTCATTTATTACAGTTCTAATGATTCTCAACCATGCACTCAGTGGCATTGCTGTGTCTATGGTTATGAAGTATGCTGATAATATTGTGAAGGTATATTCTACATCGGTAGCAATGCTTCTTACAGCAGTTGTGTCTGTGTTTCTATTTGGCTTTCATCTATCCCTTGCCTTTTTCCTTGGCTCAACCGTTGTCTCGGTTGCGGTTTATCTGCATTCAATTGGGAAGGTGCAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

345

Amino Acids

38.1

Weight (kDa)

9.37

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	106
AccI	GTMKAC	2 cut(s)	348, 648
AciI	CCGC	2 cut(s)	106, 998
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	4 cut(s)	27, 72, 374, 458
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	4 cut(s)	8, 325, 460, 713
AfiI	CCNNNNNNNGG	2 cut(s)	358, 596
AgsI	TTSAA	6 cut(s)	250, 509, 681, 733, 755, 1014
AluBI	AGCT	5 cut(s)	16, 41, 47, 170, 269
AluI	AGCT	5 cut(s)	16, 41, 47, 170, 269
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	994
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	609, 657, 726
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	2 cut(s)	269, 515
ApoI	RAATTY	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	123, 675
AspS9I	GGNCC	2 cut(s)	95, 108
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	95, 108
BaeGI	GKGCMC	1 cut(s)	545
BalI	TGGCCA	1 cut(s)	611
BarI	GAAGNNNNNNTAC	4 cut(s)	386, 418, 897, 929
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	256, 502
BccI	CCATC	2 cut(s)	29, 601
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciVI	GTATCC	1 cut(s)	788
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	994
BfaI	CTAG	2 cut(s)	266, 374
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	2 cut(s)	270, 516
BlsI	GCNGC	2 cut(s)	271, 517
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	2 cut(s)	95, 108
BmgT120I	GGNCC	2 cut(s)	95, 108
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	406, 754
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	2 cut(s)	307, 663
BpuMI	CCSGG	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	715
BsaBI	GATNNNNATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	654, 790, 973
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 596
Bse1I	ACTGG	2 cut(s)	98, 336
Bse3DI	GCAATG	4 cut(s)	298, 362, 843, 915
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	654, 790, 973
BseGI	GGATG	2 cut(s)	340, 421
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	358, 596
BseMI	GCAATG	4 cut(s)	298, 362, 843, 915
BseMII	CTCAG	2 cut(s)	297, 850
BseNI	ACTGG	2 cut(s)	98, 336
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	256, 502
BseYI	CCCAGC	1 cut(s)	197
BsgI	GTGCAG	3 cut(s)	534, 555, 716
BshFI	GGCC	3 cut(s)	611, 659, 728
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	359, 422
BslI	CCNNNNNNNGG	2 cut(s)	358, 596
BsmAI	GTCTC	1 cut(s)	994
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	3 cut(s)	611, 659, 728
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	22, 28
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	2 cut(s)	106, 998
BspANI	GGCC	3 cut(s)	611, 659, 728
BspCNI	CTCAG	2 cut(s)	298, 849
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	36
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	4 cut(s)	298, 362, 843, 915
BsrI	ACTGG	2 cut(s)	98, 336
BssECI	CCNNGG	3 cut(s)	654, 790, 973
BssMI	GATC	2 cut(s)	22, 28
BssNAI	GTATAC	2 cut(s)	349, 649
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	790, 973
Bst1107I	GTATAC	2 cut(s)	349, 649
Bst4CI	ACNGT	2 cut(s)	811, 985
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	715
BstDEI	CTNAG	2 cut(s)	306, 836
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	2 cut(s)	340, 421
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	2 cut(s)	123, 675
BstKTI	GATC	2 cut(s)	25, 31
BstMAI	GTCTC	1 cut(s)	994
BstMBI	GATC	2 cut(s)	22, 28
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 734
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	545
BstSNI	TACGTA	1 cut(s)	715
BstV1I	GCAGC	2 cut(s)	256, 502
BstV2I	GAAGAC	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstZ17I	GTATAC	2 cut(s)	349, 649
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	3 cut(s)	611, 659, 728
BtgI	CCRYGG	1 cut(s)	790
BtsCI	GGATG	2 cut(s)	340, 421
BtsI	GCAGTG	2 cut(s)	222, 774
BtsIMutI	CAGTG	4 cut(s)	222, 329, 774, 844
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	2 cut(s)	123, 675
Cfr13I	GGNCC	2 cut(s)	95, 108
Csp6I	GTAC	4 cut(s)	7, 324, 459, 712
CviAII	CATG	2 cut(s)	791, 830
CviQI	GTAC	4 cut(s)	7, 324, 459, 712
DdeI	CTNAG	2 cut(s)	306, 836
DpnI	GATC	2 cut(s)	24, 30
DpnII	GATC	2 cut(s)	22, 28
DraIII	CACNNNGTG	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco105I	TACGTA	1 cut(s)	715
Eco130I	CCWWGG	2 cut(s)	790, 973
Eco47I	GGWCC	2 cut(s)	95, 108
Eco57I	CTGAAG	4 cut(s)	27, 72, 374, 458
EcoT14I	CCWWGG	2 cut(s)	790, 973
ErhI	CCWWGG	2 cut(s)	790, 973
FaeI	CATG	2 cut(s)	794, 833
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 770, 802
FatI	CATG	2 cut(s)	790, 829
FauNDI	CATATG	1 cut(s)	409
FblI	GTMKAC	2 cut(s)	348, 648
Fnu4HI	GCNGC	2 cut(s)	270, 516
FokI	GGATG	2 cut(s)	347, 428
Fsp4HI	GCNGC	2 cut(s)	270, 516
FspBI	CTAG	2 cut(s)	266, 374
GlaI	GCGC	2 cut(s)	122, 674
GluI	GCNGC	2 cut(s)	270, 516
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	307, 663
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	611, 659, 728
HapII	CCGG	2 cut(s)	359, 422
HhaI	GCGC	2 cut(s)	123, 675
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	794, 833
Hin6I	GCGC	2 cut(s)	121, 673
HinP1I	GCGC	2 cut(s)	121, 673
HinfI	GANTC	7 cut(s)	282, 382, 477, 505, 751, 783, 820
HpaII	CCGG	2 cut(s)	359, 422
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	4 cut(s)	164, 349, 543, 649
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	7 cut(s)	26, 32, 50, 61, 286, 379, 755
Hpy8I	GTNNAC	4 cut(s)	164, 349, 543, 649
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	5 cut(s)	290, 687, 739, 880, 1015
HpyCH4III	ACNGT	2 cut(s)	811, 985
HpyCH4IV	ACGT	2 cut(s)	57, 714
HpyCH4V	TGCA	9 cut(s)	227, 536, 543, 551, 697, 767, 833, 1009, 1027
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 734
HpyF3I	CTNAG	2 cut(s)	306, 836
HpySE526I	ACGT	2 cut(s)	57, 714
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	794, 833
HspAI	GCGC	2 cut(s)	121, 673
Kzo9I	GATC	2 cut(s)	22, 28
LmnI	GCTCC	4 cut(s)	38, 52, 288, 424
Lsp1109I	GCAGC	2 cut(s)	256, 502
LweI	GCATC	2 cut(s)	406, 754
MaeI	CTAG	2 cut(s)	266, 374
MaeII	ACGT	2 cut(s)	57, 714
MaeIII	GTNAC	4 cut(s)	133, 217, 261, 301
MalI	GATC	2 cut(s)	24, 30
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	2 cut(s)	22, 28
MboII	GAAGA	5 cut(s)	65, 202, 394, 451, 778
MfeI	CAATTG	2 cut(s)	129, 1014
MhlI	GDGCHC	1 cut(s)	545
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	3 cut(s)	129, 229, 1014
MluNI	TGGCCA	1 cut(s)	611
MnlI	CCTC	4 cut(s)	186, 235, 301, 649
Mox20I	TGGCCA	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	4 cut(s)	68, 497, 629, 666
MslI	CAYNNNNRTG	2 cut(s)	617, 848
Msp20I	TGGCCA	1 cut(s)	611
MspI	CCGG	2 cut(s)	359, 422
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	2 cut(s)	129, 1014
Mva1269I	GAATGC	1 cut(s)	1009
MwoI	GCNNNNNNNGC	2 cut(s)	275, 734
NciI	CCSGG	1 cut(s)	423
NcoI	CCATGG	1 cut(s)	790
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	2 cut(s)	22, 28
NlaIII	CATG	2 cut(s)	794, 833
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	261
PctI	GAATGC	1 cut(s)	1009
PfeI	GAWTC	7 cut(s)	282, 382, 477, 505, 751, 783, 820
PkrI	GCNGC	2 cut(s)	271, 517
Ppu21I	YACGTR	1 cut(s)	715
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	95, 108
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	4 cut(s)	8, 325, 460, 713
RsaNI	GTAC	4 cut(s)	7, 324, 459, 712
RseI	CAYNNNNRTG	2 cut(s)	617, 848
SaqAI	TTAA	4 cut(s)	68, 497, 629, 666
SatI	GCNGC	2 cut(s)	270, 516
Sau3AI	GATC	2 cut(s)	22, 28
Sau96I	GGNCC	2 cut(s)	95, 108
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	2 cut(s)	406, 754
SfcI	CTRYAG	1 cut(s)	744
SinI	GGWCC	2 cut(s)	95, 108
SmiMI	CAYNNNNRTG	2 cut(s)	617, 848
SnaBI	TACGTA	1 cut(s)	715
Sse9I	AATT	3 cut(s)	129, 229, 1014
SsiI	CCGC	2 cut(s)	106, 998
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	2 cut(s)	266, 374
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	790, 973
TaaI	ACNGT	2 cut(s)	811, 985
TaiI	ACGT	2 cut(s)	60, 717
TaqI	TCGA	2 cut(s)	60, 188
TasI	AATT	3 cut(s)	129, 229, 1014
TatI	WGTACW	2 cut(s)	6, 323
TfiI	GAWTC	7 cut(s)	282, 382, 477, 505, 751, 783, 820
Tru1I	TTAA	4 cut(s)	68, 497, 629, 666
Tru9I	TTAA	4 cut(s)	68, 497, 629, 666
TscAI	CASTG	4 cut(s)	229, 336, 774, 844
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	2 cut(s)	269, 515
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	6 cut(s)	309, 351, 511, 788, 878, 941
TspRI	CASTG	4 cut(s)	229, 336, 774, 844
VneI	GTGCAC	1 cut(s)	541
VpaK11BI	GGWCC	2 cut(s)	95, 108
XapI	RAATTY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	2 cut(s)	597, 836
XmiI	GTMKAC	2 cut(s)	348, 648
XspI	CTAG	2 cut(s)	266, 374
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.