Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

43188260 .. 43190722

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG245100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGTACAGGAAGCTCAAAGATCAGGATGAAGATGGGAATTCAGCTGCCGACGACCTCGAAAGTTTACGGGGAAAGCCGCTTTCTGTTGCGGCCAGTTTGGGAGGGGGACCAGTAGACCGAAAATGGAAGCGAAAGTCAATTGTTACTCTGGCTTTGACTGTTCTTACGAGTTCACAAGCAATATTGATTGTGTGGTCGAAGCGAGCTGGCAAGTATGAGTATAGCGTTACGACTGCTAATTTTTCGGTGGAGGCTTTGAAATGTGCATTGTCGCTTGCTGCTTTGGCACGAATCTGGAATAATGAAGGTGTTACTGACGATAACAGGTTGAGTACAACATTGGATGAAGTTATTGTATACCCGATTCCTGCAGCCCTTTACCTAGTCAAAAATTTGCTTCAGTACTATATATTTGCATATGTGGATGCCCCGGGTTATCAAATACTGAAGAACCTGAATATTATCAGCACTGGGATCTTATACAGAATCATACTCAAGAGGAAGTTAAGTGAGATTCAATGGGCTGCTTTCATAATACTATGTGCAGGGTGCACTACAGCGCAGCTGAACCCAAGTTCTGACCATGTTCTTCAAACTCCATTGCAAGGTTGGGTGATGGCCATTGTCATGGCACTTCTAAGTGGTTTTGCGGGAGTATACACCGAGGCGATAATTAAAAAGCGGCCTTCAAGAAATATAAATGTGCAGAACTTCTGGTTGTATGTCTTTGGAATGGTCTTCAATGCTGCTGCTATAGTGATTCAAGATTTTGATGCAGTGGTGAACAAGTATATAAAACACTTCTCTCTATTTATGATCATGCATTTTCTGCTTACTATATGTTTAGAATTATGCCTGGATTCCAATTATGTTCAACTCATTCTTCTATATTCAGGGGCTTCTTCCATGGATACTCATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

308

Amino Acids

34.37

Weight (kDa)

8.47

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	46 - 264	2.7e-28	Nucleotide-sugar transporter
UAA	PF08449	117 - 269	2.1e-08	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	925
AccI	GTMKAC	3 cut(s)	117, 360, 660
AciI	CCGC	4 cut(s)	80, 92, 653, 685
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	2 cut(s)	93, 621
AcsI	RAATTY	2 cut(s)	40, 394
AcuI	CTGAAG	2 cut(s)	386, 470
AfaI	GTAC	3 cut(s)	8, 337, 407
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	7 cut(s)	262, 521, 596, 693, 745, 767, 878
AjnI	CCWGG	1 cut(s)	858
AluBI	AGCT	4 cut(s)	16, 47, 209, 568
AluI	AGCT	4 cut(s)	16, 47, 209, 568
Alw21I	GWGCWC	1 cut(s)	557
Alw44I	GTGCAC	1 cut(s)	553
AlwI	GGATC	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	3 cut(s)	93, 621, 686
ApaLI	GTGCAC	1 cut(s)	553
ApeKI	GCWGC	7 cut(s)	47, 281, 374, 527, 565, 749, 752
ApoI	RAATTY	2 cut(s)	40, 394
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	2 cut(s)	434, 435
AsuHPI	GGTGA	2 cut(s)	628, 796
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	7 cut(s)	34, 268, 386, 514, 577, 736, 739
BccI	CCATC	2 cut(s)	29, 613
BciT130I	CCWGG	1 cut(s)	860
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	1 cut(s)	819
BcnI	CCSGG	2 cut(s)	434, 435
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	3 cut(s)	372, 558, 756
BfuI	GTATCC	1 cut(s)	907
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	3 cut(s)	434, 435, 860
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	3 cut(s)	434, 435, 860
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	418, 766
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	733
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	2 cut(s)	434, 435
BsaJI	CCNNGG	4 cut(s)	432, 433, 666, 909
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	3 cut(s)	96, 113, 478
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	4 cut(s)	432, 433, 666, 909
BseGI	GGATG	3 cut(s)	34, 352, 433
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	602
BseNI	ACTGG	3 cut(s)	96, 113, 478
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	7 cut(s)	34, 268, 386, 514, 577, 736, 739
BsgI	GTGCAG	2 cut(s)	567, 728
BshFI	GGCC	3 cut(s)	95, 623, 688
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	95, 623, 688
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	22, 477, 819
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	4 cut(s)	80, 92, 653, 685
BspANI	GGCC	3 cut(s)	95, 623, 688
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	602
BsrI	ACTGG	3 cut(s)	96, 113, 478
BssECI	CCNNGG	4 cut(s)	432, 433, 666, 909
BssMI	GATC	3 cut(s)	22, 477, 819
BssNAI	GTATAC	2 cut(s)	361, 661
BssT1I	CCWWGG	1 cut(s)	909
Bst1107I	GTATAC	2 cut(s)	361, 661
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	832
BstC8I	GCNNGC	3 cut(s)	207, 211, 279
BstDEI	CTNAG	1 cut(s)	641
BstDSI	CCRYGG	1 cut(s)	909
BstF5I	GGATG	3 cut(s)	34, 352, 433
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	3 cut(s)	25, 480, 822
BstMBI	GATC	3 cut(s)	22, 477, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 832
BstNI	CCWGG	1 cut(s)	860
BstSCI	CCNGG	3 cut(s)	432, 433, 858
BstSFI	CTRYAG	3 cut(s)	372, 558, 756
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	7 cut(s)	34, 268, 386, 514, 577, 736, 739
BstV2I	GAAGAC	1 cut(s)	733
BstX2I	RGATCY	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	477
BstZ17I	GTATAC	2 cut(s)	361, 661
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	3 cut(s)	95, 623, 688
BtgI	CCRYGG	1 cut(s)	909
BtsCI	GGATG	3 cut(s)	34, 352, 433
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	2 cut(s)	471, 786
Cac8I	GCNNGC	3 cut(s)	207, 211, 279
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	110
Cfr9I	CCCGGG	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	7, 336, 406
CviAII	CATG	4 cut(s)	587, 631, 823, 910
CviQI	GTAC	3 cut(s)	7, 336, 406
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	3 cut(s)	24, 479, 821
DpnII	GATC	3 cut(s)	22, 477, 819
EaeI	YGGCCR	2 cut(s)	93, 621
Eco130I	CCWWGG	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	386, 470
Eco88I	CYCGRG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	909
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	909
FaeI	CATG	4 cut(s)	590, 634, 826, 913
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	586, 630, 822, 909
FauI	CCCGC	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	819
FblI	GTMKAC	3 cut(s)	117, 360, 660
FokI	GGATG	3 cut(s)	41, 359, 440
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	95, 623, 688
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	4 cut(s)	590, 634, 826, 913
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	6 cut(s)	294, 367, 489, 517, 763, 863
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	628, 796
Hpy166II	GTNNAC	7 cut(s)	68, 118, 176, 361, 555, 661, 787
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	5 cut(s)	26, 298, 499, 693, 767
Hpy8I	GTNNAC	7 cut(s)	68, 118, 176, 361, 555, 661, 787
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	302, 699
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	9 cut(s)	269, 374, 419, 548, 555, 607, 709, 779, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 832
HpyF3I	CTNAG	1 cut(s)	641
Hsp92II	CATG	4 cut(s)	590, 634, 826, 913
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	3 cut(s)	22, 477, 819
Lsp1109I	GCAGC	7 cut(s)	34, 268, 386, 514, 577, 736, 739
LweI	GCATC	2 cut(s)	418, 766
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	145, 229, 313
MalI	GATC	3 cut(s)	24, 479, 821
MboI	GATC	3 cut(s)	22, 477, 819
MboII	GAAGA	6 cut(s)	44, 463, 584, 733, 878, 897
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	7 cut(s)	40, 141, 241, 394, 675, 851, 868
MluNI	TGGCCA	1 cut(s)	623
MnlI	CCTC	5 cut(s)	68, 98, 247, 495, 661
Mox20I	TGGCCA	1 cut(s)	623
Mph1103I	ATGCAT	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	2 cut(s)	509, 678
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	623
MspA1I	CMGCKG	2 cut(s)	47, 568
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	3 cut(s)	434, 435, 860
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	860
MwoI	GCNNNNNNNGC	2 cut(s)	287, 832
NciI	CCSGG	2 cut(s)	434, 435
NcoI	CCATGG	1 cut(s)	909
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	3 cut(s)	22, 477, 819
NlaIII	CATG	4 cut(s)	590, 634, 826, 913
NlaIV	GGNNCC	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	828
PfeI	GAWTC	6 cut(s)	294, 367, 489, 517, 763, 863
PsiI	TTATAA	1 cut(s)	925
Psp6I	CCWGG	1 cut(s)	858
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	477
PvuII	CAGCTG	2 cut(s)	47, 568
RsaI	GTAC	3 cut(s)	8, 337, 407
RsaNI	GTAC	3 cut(s)	7, 336, 406
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	509, 678
Sau3AI	GATC	3 cut(s)	22, 477, 819
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	434, 435, 860
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	2 cut(s)	418, 766
SfcI	CTRYAG	3 cut(s)	372, 558, 756
SinI	GGWCC	1 cut(s)	110
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	7 cut(s)	40, 141, 241, 394, 675, 851, 868
SsiI	CCGC	4 cut(s)	80, 92, 653, 685
SspI	AATATT	2 cut(s)	186, 463
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	432, 433, 858
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	60, 200
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	7 cut(s)	40, 141, 241, 394, 675, 851, 868
TatI	WGTACW	3 cut(s)	6, 335, 405
TauI	GCSGC	3 cut(s)	82, 95, 688
TfiI	GAWTC	6 cut(s)	294, 367, 489, 517, 763, 863
Tru1I	TTAA	2 cut(s)	509, 678
Tru9I	TTAA	2 cut(s)	509, 678
TscAI	CASTG	2 cut(s)	478, 786
TseI	GCWGC	7 cut(s)	47, 281, 374, 527, 565, 749, 752
TspDTI	ATGAA	4 cut(s)	45, 321, 363, 523
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	2 cut(s)	478, 786
VneI	GTGCAC	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	40, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
XmaI	CCCGGG	1 cut(s)	433
XmiI	GTMKAC	3 cut(s)	117, 360, 660
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.