Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

27106180 .. 27108215

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1140500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGTACAGGACACTCAAAGATCAGGATCAAGACGAATCTTCAGCCCCCGGAGACCTCGAAAGCTTGCGGGGCAAGCCAATTCCTGCCGTCAGCCCAGTGGAGCTCTCCAAGTGGAAGCTCAAGTATGCCCAACTTTTGCTATTTTGTTCCAATTGGTCGGCTGTTACTATAGCTTTGACCGTTTTGACCAGTTCACAAGCAATATTGATTGTGTGGTCGAAGAGGGCCGGCAAGTATGAGTATAGTGTCACCACTGCAAATTTCTCGGTGGAGGCTTTGAAGTGTGCAATATCGCTTGCTGCTTTGGCGCGAATCTGGAGGAATGAAGGTGTTACTGAAGATAACAGGTTGAGTGCAAAACTGGATGAAGTTATTGTATATCCCATTCCGGCATTTCTTTACCTAGTCAAGAATTTGCTTCAGTATTATATATTTGCGTATGTGGATGCTCCGGGTTATCAAATACTGAAGAACTTCAAGATTATCAGTACTGGAATTTTGTACAGAATCATACTCAAGAGAAAGTTAAGTGAGATCCAACGGGCCGCTTTCATTATACTATGTGCAGGGTGCACTACGGCACAACTGAACCCAAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

202

Amino Acids

22.6

Weight (kDa)

9.08

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	58 - 200	2.3e-16	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	313
AciI	CCGC	2 cut(s)	70, 549
AclWI	GGATC	2 cut(s)	36, 532
AcsI	RAATTY	3 cut(s)	262, 415, 498
AcuI	CTGAAG	4 cut(s)	27, 360, 407, 491
AfaI	GTAC	3 cut(s)	8, 493, 506
AgsI	TTSAA	2 cut(s)	283, 481
AluBI	AGCT	4 cut(s)	66, 106, 121, 176
AluI	AGCT	4 cut(s)	66, 106, 121, 176
Alw21I	GWGCWC	2 cut(s)	108, 578
Alw26I	GTCTC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	574
AlwI	GGATC	2 cut(s)	36, 532
AoxI	GGCC	2 cut(s)	228, 546
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	3 cut(s)	262, 415, 498
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	228, 546
AsuC2I	CCSGG	2 cut(s)	51, 456
AsuHPI	GGTGA	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	108, 578
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	74, 597
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BcnI	CCSGG	2 cut(s)	51, 456
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	2 cut(s)	303, 549
BlsI	GCNGC	2 cut(s)	304, 550
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	2 cut(s)	51, 456
BmgT120I	GGNCC	2 cut(s)	228, 546
BmrFI	CCNGG	2 cut(s)	51, 456
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	107, 503
BpuMI	CCSGG	2 cut(s)	51, 456
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	4 cut(s)	98, 192, 369, 499
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	373, 454
BseJI	GATNNNNATC	1 cut(s)	27
BseNI	ACTGG	4 cut(s)	98, 192, 369, 499
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	588
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	2 cut(s)	230, 548
BsiHKAI	GWGCWC	2 cut(s)	108, 578
BsiSI	CCGG	4 cut(s)	51, 231, 392, 455
BsmAI	GTCTC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	230, 548
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	108, 578
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	22, 28, 537
BspACI	CCGC	2 cut(s)	70, 549
BspANI	GGCC	2 cut(s)	230, 548
BspFNI	CGCG	1 cut(s)	313
BspPI	GGATC	2 cut(s)	36, 532
BspTNI	GGTCTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	4 cut(s)	98, 192, 369, 499
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	22, 28, 537
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	68, 77, 232, 300
BstF5I	GGATG	2 cut(s)	373, 454
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	3 cut(s)	25, 31, 540
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	22, 28, 537
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 76, 308
BstSCI	CCNGG	2 cut(s)	49, 454
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	578
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	537
BstYI	RGATCY	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	230, 548
BtsCI	GGATG	2 cut(s)	373, 454
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	105, 255
Cac8I	GCNNGC	4 cut(s)	68, 77, 232, 300
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	228, 546
Csp6I	GTAC	3 cut(s)	7, 492, 505
CviQI	GTAC	3 cut(s)	7, 492, 505
DpnI	GATC	3 cut(s)	24, 30, 539
DpnII	GATC	3 cut(s)	22, 28, 537
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	4 cut(s)	27, 360, 407, 491
EcoICRI	GAGCTC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	108
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	303, 549
FokI	GGATG	2 cut(s)	380, 461
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	303, 549
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	2 cut(s)	303, 549
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	230, 548
HapII	CCGG	4 cut(s)	51, 231, 392, 455
HhaI	GCGC	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	3 cut(s)	38, 315, 510
HpaII	CCGG	4 cut(s)	51, 231, 392, 455
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	197, 576
Hpy188III	TCNNGA	6 cut(s)	26, 32, 319, 412, 481, 520
Hpy8I	GTNNAC	2 cut(s)	197, 576
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	260, 290, 359, 569, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 76, 308
HspAI	GCGC	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	22, 28, 537
LmnI	GCTCC	2 cut(s)	103, 457
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	3 cut(s)	166, 250, 334
MalI	GATC	3 cut(s)	24, 30, 539
MboI	GATC	3 cut(s)	22, 28, 537
MboII	GAAGA	4 cut(s)	33, 235, 353, 484
MfeI	CAATTG	1 cut(s)	154
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	2 cut(s)	108, 578
MluCI	AATT	5 cut(s)	81, 154, 262, 415, 498
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	4 cut(s)	68, 219, 268, 315
MroNI	GCCGGC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	1 cut(s)	530
MspI	CCGG	4 cut(s)	51, 231, 392, 455
MspR9I	CCNGG	2 cut(s)	51, 456
MunI	CAATTG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	72, 76, 308
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	2 cut(s)	51, 456
NdeII	GATC	3 cut(s)	22, 28, 537
NgoMIV	GCCGGC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	250
PdiI	GCCGGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	38, 315, 510
PkrI	GCNGC	2 cut(s)	304, 550
Psp124BI	GAGCTC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	228, 546
PsuI	RGATCY	1 cut(s)	537
RsaI	GTAC	3 cut(s)	8, 493, 506
RsaNI	GTAC	3 cut(s)	7, 492, 505
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	2 cut(s)	303, 549
Sau3AI	GATC	3 cut(s)	22, 28, 537
Sau96I	GGNCC	2 cut(s)	228, 546
ScaI	AGTACT	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	51, 456
SduI	GDGCHC	2 cut(s)	108, 578
SetI	ASST	8 cut(s)	60, 68, 108, 123, 178, 334, 353, 408
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	122, 518
SmoI	CTYRAG	2 cut(s)	122, 518
Sse9I	AATT	5 cut(s)	81, 154, 262, 415, 498
SsiI	CCGC	2 cut(s)	70, 549
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	407
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	49, 454
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	60, 221
TasI	AATT	5 cut(s)	81, 154, 262, 415, 498
TatI	WGTACW	3 cut(s)	6, 491, 504
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	3 cut(s)	38, 315, 510
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	2 cut(s)	105, 262
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	342, 384, 544
TspRI	CASTG	2 cut(s)	105, 262
VneI	GTGCAC	1 cut(s)	574
XapI	RAATTY	3 cut(s)	262, 415, 498
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	1 cut(s)	407
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.