Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Reverse (-)

26747260 .. 26751038

Gene Structure 3779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGGAGCACGGCCCAAACAAATAACCCGCCGACGGTGTCGTTTTCGTTCGGCTATCTTCTGCTTGAGGCGGAACGAGTCTTGCATGTGGCTCAGAAGCTCAAAGATCAGGATGAAGATGGGAATTCAACTGCCGACGACCTCGAAAGTTTACGGGGAAAGCCGCTTTCTGTTGCGGCCAGTTTGGGAGGGGGACCAGTAGACCGAAAATGGAAGCGAAAGTCAATTGTTACTCTGGCTTTGACTGTTCTTACGAGTTCACAAGCAATATTGATTGTGTGGTCGAAGCGAGCTGGCAAGTATGAGTATAGTGTTACCACTGCTAATTTCTCGGTGGAGGCTTTGAAATGTGCGTTGTCGCTTGCTGCTTTGGCACGAATCTGGAATAATGAAGGTGTTACTGACGATAACAGGTTGACTACAACATTGGATGAAGTTATTGTATACCCGATTCCTGCAGCACTTTACCTAGTAAAAAATTTGCTTCAGTACTATATATTTGCATATGTGGATGCTCCGGGTTATCAAATACTGAAGAACCTGAATATTATCAGCACTGGGGTCTTATACAGAATCATACTCAAAAGGAAGTTAAGTGAGATTCAATGGGCTGCTTTCATAATACTATGTGCAGGGTGCACTACGGCGCAGCTGAACCCAAGTTCTGACCATGTTCTTCAAACTCCATTGCAAGGTTGGGTGATGGCCATTGTCATGGCACTTCTAAGTGGTTTTGCGGGAGTATACACCGAGGCAATAATTAAAAAGCGGCCTTCAAGAAATATAAATGTGCAGAACTTCTGGTTGTACGTCTTTGGAATGGTCTTCAATGCTGCTGCTATAGTGATTCAAGATTTTGATGCAGTGGTGAACAAGGGCTTCTTCCACGGATACTCATTTATAACAGTTCTCATGATTCTCAACCATGCACTCAGTGGCATTGCTGTGTCTATGGTAATGAAGTATGCTGACAATATTGTGAAGGTGTATTCTACTTCGGTAGCAATGCTGCTTACAGCTGTTGTTTCTGTATTCCTATTTGGCTTTCATCTATCCCTTGCCTTTTTCCTTGGCTCAATTGTTGTCTCGGTGTCGGTGTATCTGCACTCAATTGGGAAGGTGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

375

Amino Acids

41.27

Weight (kDa)

9.23

Isoelectric Point (pI)

25.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	74 - 369	2e-55	Nucleotide-sugar transporter
UAA	PF08449	136 - 370	1.8e-09	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	902
AccI	GTMKAC	3 cut(s)	201, 444, 744
AciI	CCGC	6 cut(s)	29, 71, 164, 176, 737, 769
AcoI	YGGCCR	2 cut(s)	177, 705
AcsI	RAATTY	2 cut(s)	124, 478
AcuI	CTGAAG	2 cut(s)	470, 554
AdeI	CACNNNGTG	1 cut(s)	935
AfaI	GTAC	2 cut(s)	491, 809
AfiI	CCNNNNNNNGG	2 cut(s)	34, 692
AgsI	TTSAA	7 cut(s)	129, 346, 605, 680, 777, 829, 851
AluBI	AGCT	4 cut(s)	100, 293, 652, 1019
AluI	AGCT	4 cut(s)	100, 293, 652, 1019
Alw21I	GWGCWC	2 cut(s)	11, 641
Alw26I	GTCTC	1 cut(s)	1090
Alw44I	GTGCAC	1 cut(s)	637
AoxI	GGCC	4 cut(s)	12, 177, 705, 770
ApaLI	GTGCAC	1 cut(s)	637
ApeKI	GCWGC	7 cut(s)	365, 458, 611, 649, 833, 836, 1009
ApoI	RAATTY	2 cut(s)	124, 478
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	13, 194
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	712, 880
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	817
Bbv12I	GWGCWC	2 cut(s)	11, 641
BbvI	GCAGC	7 cut(s)	352, 470, 598, 661, 820, 823, 996
BccI	CCATC	2 cut(s)	113, 697
BceAI	ACGGC	2 cut(s)	27, 660
BciVI	GTATCC	1 cut(s)	884
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	1090
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	2 cut(s)	456, 840
BfuI	GTATCC	1 cut(s)	884
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	13, 194
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	519
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	502, 850
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	519
BsaJI	CCNNGG	3 cut(s)	750, 886, 1069
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 692
Bse1I	ACTGG	3 cut(s)	180, 197, 562
Bse3DI	GCAATG	3 cut(s)	686, 939, 1011
BseDI	CCNNGG	3 cut(s)	750, 886, 1069
BseGI	GGATG	3 cut(s)	118, 436, 517
BseLI	CCNNNNNNNGG	2 cut(s)	34, 692
BseMI	GCAATG	3 cut(s)	686, 939, 1011
BseMII	CTCAG	2 cut(s)	107, 946
BseNI	ACTGG	3 cut(s)	180, 197, 562
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	7 cut(s)	352, 470, 598, 661, 820, 823, 996
BsgI	GTGCAG	3 cut(s)	651, 812, 1088
BshFI	GGCC	4 cut(s)	14, 179, 707, 772
BsiHKAI	GWGCWC	2 cut(s)	11, 641
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	34, 692
BsmAI	GTCTC	1 cut(s)	1090
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	4 cut(s)	14, 179, 707, 772
Bsp1286I	GDGCHC	2 cut(s)	11, 641
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	6 cut(s)	29, 71, 164, 176, 737, 769
BspANI	GGCC	4 cut(s)	14, 179, 707, 772
BspCNI	CTCAG	2 cut(s)	106, 945
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	460
BsrDI	GCAATG	3 cut(s)	686, 939, 1011
BsrI	ACTGG	3 cut(s)	180, 197, 562
BssECI	CCNNGG	3 cut(s)	750, 886, 1069
BssMI	GATC	1 cut(s)	106
BssNAI	GTATAC	2 cut(s)	445, 745
BssT1I	CCWWGG	1 cut(s)	1069
Bst1107I	GTATAC	2 cut(s)	445, 745
Bst4CI	ACNGT	3 cut(s)	37, 247, 907
BstC8I	GCNNGC	3 cut(s)	291, 295, 363
BstDEI	CTNAG	3 cut(s)	93, 725, 932
BstDSI	CCRYGG	1 cut(s)	886
BstF5I	GGATG	3 cut(s)	118, 436, 517
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	1090
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	2 cut(s)	456, 840
BstSLI	GKGCMC	1 cut(s)	641
BstV1I	GCAGC	7 cut(s)	352, 470, 598, 661, 820, 823, 996
BstV2I	GAAGAC	1 cut(s)	817
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstZ17I	GTATAC	2 cut(s)	445, 745
BsuI	GTATCC	1 cut(s)	884
BsuRI	GGCC	4 cut(s)	14, 179, 707, 772
BtgI	CCRYGG	1 cut(s)	886
BtsCI	GGATG	3 cut(s)	118, 436, 517
BtsI	GCAGTG	2 cut(s)	318, 870
BtsIMutI	CAGTG	4 cut(s)	318, 555, 870, 940
Cac8I	GCNNGC	3 cut(s)	291, 295, 363
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	13, 194
Csp6I	GTAC	2 cut(s)	490, 808
CviAII	CATG	5 cut(s)	86, 671, 715, 913, 926
CviQI	GTAC	2 cut(s)	490, 808
DdeI	CTNAG	3 cut(s)	93, 725, 932
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DraIII	CACNNNGTG	1 cut(s)	935
EaeI	YGGCCR	2 cut(s)	177, 705
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	1069
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	470, 554
EcoRI	GAATTC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	1069
ErhI	CCWWGG	1 cut(s)	1069
FaeI	CATG	5 cut(s)	89, 674, 718, 916, 929
FalI	AAGNNNNNCTT	2 cut(s)	866, 898
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	5 cut(s)	85, 670, 714, 912, 925
FauI	CCCGC	2 cut(s)	36, 730
FauNDI	CATATG	1 cut(s)	505
FblI	GTMKAC	3 cut(s)	201, 444, 744
FokI	GGATG	3 cut(s)	125, 443, 524
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	648
HaeIII	GGCC	4 cut(s)	14, 179, 707, 772
HapII	CCGG	1 cut(s)	518
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	5 cut(s)	89, 674, 718, 916, 929
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	7 cut(s)	78, 378, 451, 573, 601, 847, 916
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	2 cut(s)	712, 880
Hpy166II	GTNNAC	8 cut(s)	152, 202, 260, 417, 445, 639, 745, 871
Hpy188I	TCNGA	2 cut(s)	96, 667
Hpy188III	TCNNGA	5 cut(s)	110, 382, 777, 851, 913
Hpy8I	GTNNAC	8 cut(s)	152, 202, 260, 417, 445, 639, 745, 871
Hpy99I	CGWCG	2 cut(s)	37, 140
HpyAV	CCTTC	4 cut(s)	386, 783, 976, 1111
HpyCH4III	ACNGT	3 cut(s)	37, 247, 907
HpyCH4IV	ACGT	1 cut(s)	810
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	3 cut(s)	93, 725, 932
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	5 cut(s)	89, 674, 718, 916, 929
HspAI	GCGC	1 cut(s)	647
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	6, 520
Lsp1109I	GCAGC	7 cut(s)	352, 470, 598, 661, 820, 823, 996
LweI	GCATC	2 cut(s)	502, 850
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	3 cut(s)	229, 313, 397
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	6 cut(s)	50, 128, 547, 668, 817, 874
MfeI	CAATTG	3 cut(s)	225, 1077, 1110
MhlI	GDGCHC	2 cut(s)	11, 641
MlsI	TGGCCA	1 cut(s)	707
MluCI	AATT	7 cut(s)	124, 225, 325, 478, 759, 1077, 1110
MluNI	TGGCCA	1 cut(s)	707
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	61, 152, 182, 331, 745
Mox20I	TGGCCA	1 cut(s)	707
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	2 cut(s)	593, 762
MslI	CAYNNNNRTG	2 cut(s)	713, 944
Msp20I	TGGCCA	1 cut(s)	707
MspA1I	CMGCKG	2 cut(s)	652, 1019
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	3 cut(s)	225, 1077, 1110
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	519
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	5 cut(s)	89, 674, 718, 916, 929
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	89
PagI	TCATGA	1 cut(s)	912
PfeI	GAWTC	6 cut(s)	378, 451, 573, 601, 847, 916
PflFI	GACNNNGTC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	902
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	13, 194
PstI	CTGCAG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	37
PvuII	CAGCTG	2 cut(s)	652, 1019
RsaI	GTAC	2 cut(s)	491, 809
RsaNI	GTAC	2 cut(s)	490, 808
RseI	CAYNNNNRTG	2 cut(s)	713, 944
SaqAI	TTAA	2 cut(s)	593, 762
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	13, 194
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	2 cut(s)	11, 641
SfaNI	GCATC	2 cut(s)	502, 850
SfcI	CTRYAG	2 cut(s)	456, 840
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	713, 944
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	7 cut(s)	124, 225, 325, 478, 759, 1077, 1110
SsiI	CCGC	6 cut(s)	29, 71, 164, 176, 737, 769
SspI	AATATT	3 cut(s)	270, 547, 976
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	1069
TaaI	ACNGT	3 cut(s)	37, 247, 907
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	2 cut(s)	144, 284
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	7 cut(s)	124, 225, 325, 478, 759, 1077, 1110
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	3 cut(s)	166, 179, 772
TfiI	GAWTC	6 cut(s)	378, 451, 573, 601, 847, 916
Tru1I	TTAA	2 cut(s)	593, 762
Tru9I	TTAA	2 cut(s)	593, 762
TscAI	CASTG	4 cut(s)	325, 562, 870, 940
TseI	GCWGC	7 cut(s)	365, 458, 611, 649, 833, 836, 1009
TspDTI	ATGAA	6 cut(s)	129, 405, 447, 607, 974, 1037
TspGWI	ACGGA	1 cut(s)	903
TspRI	CASTG	4 cut(s)	325, 562, 870, 940
Tth111I	GACNNNGTC	1 cut(s)	37
VneI	GTGCAC	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	124, 478
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	2 cut(s)	693, 932
XmiI	GTMKAC	3 cut(s)	201, 444, 744
XspI	CTAG	1 cut(s)	470
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.