Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006980

Physical Location & Seq

Genomic Coordinates Forward (+)

15747271 .. 15750651

Gene Structure 3381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGATGATATCTACCTTTCTAATGTGCTGTTTATCGTTTGATAACCAAGTATATGTACATTGTCACTTAGTTTTATGGCATTCTCATTACTTAGCACTCTTGTCTGATTATGGGGAAGAACATTCTACCAAAATCTCATCTCCACGTCTCAGAAATGGTGTAAACACGAAGGTCAAGGATGGTGCAGAGGATAAACCAAATGGAGGTGGTCATGCATTTTCATCAGCTTCTTTGGATTTTGAAATCAATAAGAGGAGGAGACAAATTGTCTATAGGGAAATTTTCCAAAACAATCAGGACTTGCAGATTCGAAGCAAAAGTTTGGAGGAGGCCAAGAAAAAGATATTGAGCTACACCCCTGGTGCTTGGATTGAGAGTGTTGGTGCCATGAAGTTGATGGACTATGATGTGCCAAAGACGACTTGTCTTCTATTGGTTGGTCCAACAGGATCTGGAAAGAGTAGCCTTGTTAATAAGATATCAAAAGTGTTTGACAGGTTTGCATCTCAAAGAGCCCAAGTGTCATATAATTCATCTGTCAGCAATGGAACTCTTTTCCTCCAGGAGTATATGATACCAAGAGGTTCAACTTCCTTTTGCCTCTATGATACCCGTAGTTTGTCTGATGATCCACCTGAAAACATCAGAACACTGGAGGATTGGATGAGACGGGGTGTTTGTCATGGGAAGCTTGTTTACAGGTACTCAGACAGCCTGCAGACCATAAAGAAGTTCAGAGCCCTTGAGTATGGTCATGTGTCCAGTGAGATCAGGAAGGTTAATTTTGTCATATTTGTTGTTGATGCTGTTTCAGTTCTGAAATCGATTGAAAGCAATGAAGATGCAGTGACACGATATAGCAAAATGATTGCGACAGCTTTCAACTCCCAACACCTGGCTTTTAAAGATGATAAACCGCTTGTTGTTGTCACACAAGGTGATCTACTTTCACAAGTTCAGCGTTCTCGTGTTCGTGTCCATTTGGGAGAACTACTGGGAATTCCACCTGTAACACAAATTTTTGATATCCCAGAAAGCAATGATCCAGTTACTGATCTGACAATAGTTGACATGTTATGCTATGCTCTTGAACACGCTGACAAAAATTTTCCCCATAAAAGAAAGGTCCAAGCTGCGTCTGTATTACTATGTATGCTCCTGTCGGTGGCAGTCCTCGGATTGCTAATCCAGGATGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

401

Amino Acids

45.05

Weight (kDa)

8.64

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13030 AT4G13030 AT4G13030
fragaria_vesca	FvH4_2g18360 FvH4_2g18360 FvH4_2g18361
malus_domestica	MD05G1169200.v1.1 MD10G1157500.v1.1
prunus_persica	Prupe.8G196400_v2.0.a1 Prupe.8G196400_v2.0.a1
pyrus_communis	pycom05g15680 pycom10g13600
rosa_chinensis	RchiOBHm_Chr6g0283741
rosa_laevigata	RLG00000012802
rosa_multiflora	Rmu_sc0001521.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185220
rosa_rugosa	Rorug06G0157400 Rorug06G0157500
rosa_samantha	Rh6AG269400 Rh6AG269500 Rh6BG271700 Rh6CG271700 Rh6CG271800 Rh6DG265500
rosa_wichuraiana	Rw6G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	895
AciI	CCGC	1 cut(s)	917
AclWI	GGATC	3 cut(s)	457, 623, 1037
AcoI	YGGCCR	1 cut(s)	1195
AcsI	RAATTY	4 cut(s)	279, 999, 1017, 1105
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	2 cut(s)	57, 704
AfiI	CCNNNNNNNGG	3 cut(s)	203, 895, 1165
AflIII	ACRYGT	1 cut(s)	1071
AgsI	TTSAA	5 cut(s)	242, 588, 830, 883, 1091
AhdI	GACNNNNNGTC	2 cut(s)	266, 423
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	4 cut(s)	358, 561, 894, 1188
AluBI	AGCT	5 cut(s)	227, 351, 691, 878, 1133
AluI	AGCT	5 cut(s)	227, 351, 691, 878, 1133
Alw26I	GTCTC	3 cut(s)	152, 253, 661
AlwI	GGATC	3 cut(s)	457, 623, 1037
AlwNI	CAGNNNCTG	2 cut(s)	452, 1052
AoxI	GGCC	2 cut(s)	330, 1195
ApeKI	GCWGC	1 cut(s)	1133
ApoI	RAATTY	4 cut(s)	279, 999, 1017, 1105
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
AspS9I	GGNCC	2 cut(s)	440, 1126
AsuHPI	GGTGA	1 cut(s)	950
AsuII	TTCGAA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	440, 1126
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	517, 742
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BauI	CACGAG	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	1120
BccI	CCATC	3 cut(s)	173, 391, 1187
BciT130I	CCWGG	4 cut(s)	360, 563, 896, 1190
BcoDI	GTCTC	3 cut(s)	152, 253, 661
BfmI	CTRYAG	2 cut(s)	271, 716
BisI	GCNGC	1 cut(s)	1134
BlsI	GCNGC	1 cut(s)	1135
Bme1390I	CCNGG	4 cut(s)	360, 563, 896, 1190
Bme18I	GGWCC	2 cut(s)	440, 1126
BmeRI	GACNNNNNGTC	2 cut(s)	266, 423
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	440, 1126
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	4 cut(s)	360, 563, 896, 1190
BmrI	ACTGGG	1 cut(s)	1004
BmsI	GCATC	3 cut(s)	512, 793, 832
BmuI	ACTGGG	1 cut(s)	1004
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	2 cut(s)	545, 674
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	764
Bsa29I	ATCGAT	1 cut(s)	824
BsaJI	CCNNGG	2 cut(s)	358, 1174
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 895, 1165
Bse1I	ACTGG	4 cut(s)	657, 762, 999, 1046
Bse3DI	GCAATG	3 cut(s)	550, 841, 1045
BseBI	CCWGG	4 cut(s)	360, 563, 896, 1190
BseCI	ATCGAT	1 cut(s)	824
BseDI	CCNNGG	2 cut(s)	358, 1174
BseGI	GGATG	3 cut(s)	184, 669, 1198
BseLI	CCNNNNNNNGG	3 cut(s)	203, 895, 1165
BseMI	GCAATG	3 cut(s)	550, 841, 1045
BseMII	CTCAG	2 cut(s)	163, 720
BseNI	ACTGG	4 cut(s)	657, 762, 999, 1046
BseRI	GAGGAG	3 cut(s)	268, 271, 341
BseXI	GCAGC	1 cut(s)	1120
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	332, 1197
BshNI	GGYRCC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	824
BslI	CCNNNNNNNGG	3 cut(s)	203, 895, 1165
BsmAI	GTCTC	3 cut(s)	152, 253, 661
BsmBI	CGTCTC	2 cut(s)	152, 661
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	332, 1197
Bsp119I	TTCGAA	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	517, 742
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
BspACI	CCGC	1 cut(s)	917
BspANI	GGCC	2 cut(s)	332, 1197
BspCNI	CTCAG	2 cut(s)	162, 719
BspDI	ATCGAT	1 cut(s)	824
BspLI	GGNNCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	720
BspPI	GGATC	3 cut(s)	457, 623, 1037
BspT104I	TTCGAA	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	3 cut(s)	550, 841, 1045
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	4 cut(s)	657, 762, 999, 1046
BssECI	CCNNGG	2 cut(s)	358, 1174
BssMI	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
BssSI	CACGAG	1 cut(s)	966
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	4 cut(s)	360, 563, 896, 1190
BstAUI	TGTACA	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	716
BstDEI	CTNAG	4 cut(s)	67, 91, 149, 706
BstF5I	GGATG	3 cut(s)	184, 669, 1198
BstKTI	GATC	6 cut(s)	452, 631, 771, 943, 1045, 1057
BstMAI	GTCTC	3 cut(s)	152, 253, 661
BstMBI	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
BstNI	CCWGG	4 cut(s)	360, 563, 896, 1190
BstNSI	RCATGY	1 cut(s)	1075
BstSCI	CCNGG	4 cut(s)	358, 561, 894, 1188
BstSFI	CTRYAG	2 cut(s)	271, 716
BstV1I	GCAGC	1 cut(s)	1120
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
Bsu15I	ATCGAT	1 cut(s)	824
BsuRI	GGCC	2 cut(s)	332, 1197
BsuTUI	ATCGAT	1 cut(s)	824
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	184, 669, 1198
BtsI	GCAGTG	1 cut(s)	852
BtsIMutI	CAGTG	3 cut(s)	650, 769, 852
Cac8I	GCNNGC	1 cut(s)	716
CaiI	CAGNNNCTG	2 cut(s)	452, 1052
Cfr13I	GGNCC	2 cut(s)	440, 1126
ClaI	ATCGAT	1 cut(s)	824
CseI	GACGC	1 cut(s)	1125
Csp6I	GTAC	2 cut(s)	56, 703
CviAII	CATG	5 cut(s)	212, 388, 683, 755, 1072
CviQI	GTAC	2 cut(s)	56, 703
DdeI	CTNAG	4 cut(s)	67, 91, 149, 706
DpnI	GATC	6 cut(s)	451, 630, 770, 942, 1044, 1056
DpnII	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
DraI	TTTAAA	1 cut(s)	904
DraIII	CACNNNGTG	1 cut(s)	938
DriI	GACNNNNNGTC	2 cut(s)	266, 423
EaeI	YGGCCR	1 cut(s)	1195
Eam1105I	GACNNNNNGTC	2 cut(s)	266, 423
Eco24I	GRGCYC	2 cut(s)	517, 742
Eco32I	GATATC	3 cut(s)	9, 480, 1027
Eco47I	GGWCC	2 cut(s)	440, 1126
EcoRI	GAATTC	1 cut(s)	999
EcoRII	CCWGG	4 cut(s)	358, 561, 894, 1188
EcoRV	GATATC	3 cut(s)	9, 480, 1027
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	517, 742
Esp3I	CGTCTC	2 cut(s)	152, 661
FaeI	CATG	5 cut(s)	215, 391, 686, 758, 1075
FatI	CATG	5 cut(s)	211, 387, 682, 754, 1071
Fnu4HI	GCNGC	1 cut(s)	1134
FokI	GGATG	2 cut(s)	191, 676
FriOI	GRGCYC	2 cut(s)	517, 742
Fsp4HI	GCNGC	1 cut(s)	1134
GluI	GCNGC	1 cut(s)	1134
GsuI	CTGGAG	2 cut(s)	545, 674
HaeIII	GGCC	2 cut(s)	332, 1197
HgaI	GACGC	1 cut(s)	1125
Hin1II	CATG	5 cut(s)	215, 391, 686, 758, 1075
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	1 cut(s)	307
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	3 cut(s)	163, 697, 1069
Hpy188I	TCNGA	9 cut(s)	106, 152, 625, 647, 709, 737, 819, 1059, 1178
Hpy188III	TCNNGA	4 cut(s)	296, 453, 772, 1088
Hpy8I	GTNNAC	3 cut(s)	163, 697, 1069
HpyAV	CCTTC	2 cut(s)	163, 769
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	6 cut(s)	185, 215, 304, 503, 718, 845
HpyF3I	CTNAG	4 cut(s)	67, 91, 149, 706
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	5 cut(s)	215, 391, 686, 758, 1075
Kzo9I	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
LmnI	GCTCC	1 cut(s)	1161
Lsp1109I	GCAGC	1 cut(s)	1120
LweI	GCATC	3 cut(s)	512, 793, 832
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	5 cut(s)	62, 847, 928, 1009, 1048
MalI	GATC	6 cut(s)	451, 630, 770, 942, 1044, 1056
MboI	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
MboII	GAAGA	3 cut(s)	128, 419, 851
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	2 cut(s)	517, 742
MluCI	AATT	7 cut(s)	264, 279, 529, 781, 999, 1017, 1105
MmeI	TCCRAC	1 cut(s)	467
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	3 cut(s)	471, 780, 903
MspR9I	CCNGG	4 cut(s)	360, 563, 896, 1190
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	4 cut(s)	360, 563, 896, 1190
NdeII	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
NlaIII	CATG	5 cut(s)	215, 391, 686, 758, 1075
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	3 cut(s)	62, 847, 928
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	1075
NspV	TTCGAA	1 cut(s)	310
PciI	ACATGT	1 cut(s)	1071
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	895
PfoI	TCCNGGA	2 cut(s)	561, 1188
PkrI	GCNGC	1 cut(s)	1135
PscI	ACATGT	1 cut(s)	1071
Psp6I	CCWGG	4 cut(s)	358, 561, 894, 1188
PspGI	CCWGG	4 cut(s)	358, 561, 894, 1188
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	440, 1126
PstI	CTGCAG	1 cut(s)	720
PstNI	CAGNNNCTG	2 cut(s)	452, 1052
PsuI	RGATCY	1 cut(s)	449
RsaI	GTAC	2 cut(s)	57, 704
RsaNI	GTAC	2 cut(s)	56, 703
SaqAI	TTAA	3 cut(s)	471, 780, 903
SatI	GCNGC	1 cut(s)	1134
Sau3AI	GATC	6 cut(s)	449, 628, 768, 940, 1042, 1054
Sau96I	GGNCC	2 cut(s)	440, 1126
ScrFI	CCNGG	4 cut(s)	360, 563, 896, 1190
SduI	GDGCHC	2 cut(s)	517, 742
SfaNI	GCATC	3 cut(s)	512, 793, 832
SfcI	CTRYAG	2 cut(s)	271, 716
SfuI	TTCGAA	1 cut(s)	310
SinI	GGWCC	2 cut(s)	440, 1126
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	7 cut(s)	264, 279, 529, 781, 999, 1017, 1105
SsiI	CCGC	1 cut(s)	917
StyD4I	CCNGG	4 cut(s)	358, 561, 894, 1188
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	310, 824
TasI	AATT	7 cut(s)	264, 279, 529, 781, 999, 1017, 1105
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	3 cut(s)	471, 780, 903
Tru9I	TTAA	3 cut(s)	471, 780, 903
TscAI	CASTG	3 cut(s)	657, 769, 852
TseFI	GTSAC	3 cut(s)	62, 847, 928
TseI	GCWGC	1 cut(s)	1133
Tsp45I	GTSAC	3 cut(s)	62, 847, 928
TspDTI	ATGAA	4 cut(s)	210, 404, 522, 852
TspRI	CASTG	3 cut(s)	657, 769, 852
Van91I	CCANNNNNTGG	1 cut(s)	895
VpaK11BI	GGWCC	2 cut(s)	440, 1126
XapI	RAATTY	4 cut(s)	279, 999, 1017, 1105
XceI	RCATGY	1 cut(s)	1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.