Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006980

Physical Location & Seq

Genomic Coordinates Forward (+)

24608916 .. 24612375

Gene Structure 3460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1157500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGGGTGGCGATGGCAGAGATACAGGGCAAGAAGAAGACTTCTTACTCCACCAAGATTCCTCCCAACTTTCATCACAAATTCTCAGTGATGGTCTGAGTGTCAAGGATGCTGTGCTGGATCAACAAAATGGGCCGGTTTTTCGAAATTTTGGCGGATTGGGAAGTCAAAATTCTTCTGCTTCTTTGGATTTTGAAGCTGATCAGAGGAGGGAAAATGTTTATAGGAAAATTTTGCAGGGTTATGATGACTTGCGGATTCGAAGCAAAGATTTGGAAGAAGCCAAGAGCAAAATCTTGAGCTACCGCCCGGGTGCGTGGATTGATAGGGTAGGTTCTGTGAAGCCGAGGAATTATGATGTGCCAAAGATGACAACGCTTTTATTGGTTGGTCCAAAAGGATCTGGAAAGAGCAGCCTTGTAAATAGAATATCCAGAGTGTTTGAAGATGACGAGTTTGCCTGTGAAAGAGCCCAAGTATCATATAATTCATCTGTTGGAGATGGAACTTTTTTCCTCCACGGATACATGATACCAAGATGTTCGAGTTCTTTTTGCCTTTATGATACCCGTAGTTTGTCTGATAATTCACTCGAAAACATGATAATACTGAAGCACTGGATGGAAAATGGTGTTCGTCACGGGGAGCTTGTTATAAGGGATTCAGACAGTCAGAGTTTGAGGAGTACGATGATGTACAAAGCTTGTGATGATGGTTATCTGTCCAGTGAGATCAGGAACGTTAATTTTGTCATATTTGTTGTTAATGGCCTCTCAGTTCTGAAATCAATGGAAAGCGATGAAGATGCAGAGACACGATATACCGAAATGATCGCCTCAGCTTTCAACTCTCGATACTTGGCATTTAAAGATGATAAACCCCTTCTTGTCGTCACACATGGTGATTTACTTTCACTTGATGAACGTGCTCGTGTTCGTGTCCATTTGGGAGAACTGCTTGGTATTCCTCCTACAACTCAAATTTTTGACATCCCAGAAAGCAGTGATCCGGTAACTGAGTTGACAATAGTTGACATGATACGCTATTCGCTTGAGCATGCCGAGAAAAATCTTCCTCGTAGAAGAAAGGTTGATACTTTGTCACTGTTACCGTGTATGCTCCTGCTAATATTCCTCAGCATCGCCACAAACATATGGTCTATGAATCATCTTCCAGATATTCAGCACGGCCCTTCACCTCAAGCACATATTCAGTACGGCTACTGCCCTTCGCCTCAAGCGCATACTCAGCATGGCTACTGCCCTTCGCCTCAAGCGCATACTCAGCATGGCTACTGCCCTTCGCCTCAAGCACATATTCAGCATTGCCATGGCTCTTCACCCCAAGCACATATTCACGATAACCTTTCACCCCTTTTGCCCCCTTCACCGTCTTCATCCACCTTGCTCCAAGAGCATATTCAGCATGATCCTTCACCCCAAGCACATATTCAGCATTGCCATGGCCCTTCACCCCAAGCACATATTCACGATAATCCTTCACCCCCTTCACTATCTTCATCCACTTTGCTCCAAGAGTATATTCAGCATGATCCTTCGCCTCAAGCACATATTCATCATTGCCATGGCCCTTCACCCCAAGCACATATTCACGATAACCCTTCACCCCTTTCACCCCCTTCACCGCCTTCATCCGCTTTGCTCCAAGAGCATATTCAGCATGATCCTTCGCCCCAAGCACATATCCAGCATAGCCATGGTCCTTCACCCCAAGCACATATTCACGACAACCCTTCACCGATTTCATCCCCTTCACCGCCTTCATCCCCTTTGCTCCAAGAGCATGTTCAGCATGATCCTTCAGCGGAAAAGCATATTTACAATGGCCCTTTGCCGAGAGTAGAACTTCGCAAGATTAAAACGAAACTTCATCAGACCAAAACGAAACTTCATCAGAAGATCAGGATCGAATGGAGTAAAATCCAACACTTGTGGTTAGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

655

Amino Acids

73.13

Weight (kDa)

6.16

Isoelectric Point (pI)

67.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13030 AT4G13030 AT4G13030
fragaria_vesca	FvH4_2g18360 FvH4_2g18360 FvH4_2g18361
malus_domestica	MD05G1169200.v1.1 MD10G1157500.v1.1
prunus_persica	Prupe.8G196400_v2.0.a1 Prupe.8G196400_v2.0.a1
pyrus_communis	pycom05g15680 pycom10g13600
rosa_chinensis	RchiOBHm_Chr6g0283741
rosa_laevigata	RLG00000012802
rosa_multiflora	Rmu_sc0001521.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185220
rosa_rugosa	Rorug06G0157400 Rorug06G0157500
rosa_samantha	Rh6AG269400 Rh6AG269500 Rh6BG271700 Rh6CG271700 Rh6CG271800 Rh6DG265500
rosa_wichuraiana	Rw6G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AciI	CCGC	7 cut(s)	153, 253, 304, 1643, 1653, 1775, 1823
AclI	AACGTT	1 cut(s)	738
AclWI	GGATC	8 cut(s)	126, 406, 998, 1421, 1544, 1676, 1808, 1931
AcsI	RAATTY	5 cut(s)	78, 145, 169, 228, 978
AcuI	CTGAAG	2 cut(s)	629, 1803
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	3 cut(s)	685, 695, 1214
AgsI	TTSAA	3 cut(s)	194, 443, 844
AluBI	AGCT	5 cut(s)	197, 300, 646, 701, 839
AluI	AGCT	5 cut(s)	197, 300, 646, 701, 839
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	8 cut(s)	126, 406, 998, 1421, 1544, 1676, 1808, 1931
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	6 cut(s)	131, 766, 1186, 1462, 1585, 1843
ApeKI	GCWGC	1 cut(s)	411
ApoI	RAATTY	5 cut(s)	78, 145, 169, 228, 978
ArsI	GACNNNNNNTTYG	2 cut(s)	1139, 1171
AspLEI	GCGC	2 cut(s)	1240, 1276
AspS9I	GGNCC	7 cut(s)	131, 389, 1187, 1463, 1586, 1718, 1844
AsuC2I	CCSGG	2 cut(s)	308, 309
AsuII	TTCGAA	2 cut(s)	142, 259
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	389, 1718
BanII	GRGCYC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BauI	CACGAG	1 cut(s)	927
BbsI	GAAGAC	2 cut(s)	42, 1383
Bbv12I	GWGCWC	1 cut(s)	928
BbvCI	CCTCAGC	2 cut(s)	835, 1133
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	5 cut(s)	5, 83, 494, 613, 704
BceAI	ACGGC	2 cut(s)	1201, 1231
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciVI	GTATCC	1 cut(s)	515
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	308, 309
BcoDI	GTCTC	1 cut(s)	803
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	308, 309
Bme18I	GGWCC	2 cut(s)	389, 1718
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	7 cut(s)	131, 389, 1187, 1463, 1586, 1718, 1844
BmrFI	CCNGG	2 cut(s)	308, 309
BmsI	GCATC	3 cut(s)	97, 793, 1146
BpiI	GAAGAC	2 cut(s)	42, 1383
Bpu10I	CCTNAGC	2 cut(s)	835, 1133
Bpu14I	TTCGAA	2 cut(s)	142, 259
BpuEI	CTTGAG	7 cut(s)	316, 1070, 1182, 1218, 1254, 1290, 1545
BpuMI	CCSGG	2 cut(s)	308, 309
BsaBI	GATNNNNATC	2 cut(s)	714, 1922
BsaJI	CCNNGG	7 cut(s)	307, 344, 517, 1327, 1459, 1582, 1714
BsaWI	WCCGGW	1 cut(s)	1006
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	620, 723
Bse3DI	GCAATG	3 cut(s)	1321, 1453, 1576
Bse8I	GATNNNNATC	2 cut(s)	714, 1922
BseDI	CCNNGG	7 cut(s)	307, 344, 517, 1327, 1459, 1582, 1714
BseGI	GGATG	8 cut(s)	112, 624, 987, 1394, 1517, 1649, 1763, 1781
BseJI	GATNNNNATC	2 cut(s)	714, 1922
BseMI	GCAATG	3 cut(s)	1321, 1453, 1576
BseMII	CTCAG	8 cut(s)	86, 97, 786, 849, 1005, 1147, 1259, 1295
BseNI	ACTGG	2 cut(s)	620, 723
BseRI	GAGGAG	2 cut(s)	220, 694
BseXI	GCAGC	1 cut(s)	423
BshFI	GGCC	6 cut(s)	133, 768, 1188, 1464, 1587, 1845
BsiHKAI	GWGCWC	1 cut(s)	928
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	3 cut(s)	134, 308, 1007
BsmAI	GTCTC	1 cut(s)	803
BsnI	GGCC	6 cut(s)	133, 768, 1188, 1464, 1587, 1845
BsoBI	CYCGRG	1 cut(s)	307
Bsp119I	TTCGAA	2 cut(s)	142, 259
Bsp1286I	GDGCHC	2 cut(s)	472, 928
Bsp1407I	TGTACA	1 cut(s)	693
Bsp19I	CCATGG	4 cut(s)	1327, 1459, 1582, 1714
BspACI	CCGC	7 cut(s)	153, 253, 304, 1643, 1653, 1775, 1823
BspANI	GGCC	6 cut(s)	133, 768, 1188, 1464, 1587, 1845
BspCNI	CTCAG	8 cut(s)	87, 96, 785, 848, 1006, 1146, 1258, 1294
BspPI	GGATC	8 cut(s)	126, 406, 998, 1421, 1544, 1676, 1808, 1931
BspQI	GCTCTTC	1 cut(s)	1339
BspT104I	TTCGAA	2 cut(s)	142, 259
BsrDI	GCAATG	3 cut(s)	1321, 1453, 1576
BsrFI	RCCGGY	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	620, 723
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	7 cut(s)	307, 344, 517, 1327, 1459, 1582, 1714
BssSI	CACGAG	1 cut(s)	927
BssT1I	CCWWGG	4 cut(s)	1327, 1459, 1582, 1714
Bst2BI	CACGAG	1 cut(s)	927
Bst4CI	ACNGT	4 cut(s)	668, 1104, 1110, 1389
Bst6I	CTCTTC	1 cut(s)	1339
BstAUI	TGTACA	1 cut(s)	693
BstBI	TTCGAA	2 cut(s)	142, 259
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	8 cut(s)	83, 95, 772, 835, 1014, 1133, 1245, 1281
BstDSI	CCRYGG	5 cut(s)	517, 1327, 1459, 1582, 1714
BstF5I	GGATG	8 cut(s)	112, 624, 987, 1394, 1517, 1649, 1763, 1781
BstHHI	GCGC	2 cut(s)	1240, 1276
BstMAI	GTCTC	1 cut(s)	803
BstNSI	RCATGY	2 cut(s)	1058, 1805
BstSCI	CCNGG	2 cut(s)	306, 307
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	2 cut(s)	42, 1383
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	6 cut(s)	133, 768, 1188, 1464, 1587, 1845
BtgI	CCRYGG	5 cut(s)	517, 1327, 1459, 1582, 1714
BtgZI	GCGATG	3 cut(s)	24, 810, 1123
BtsCI	GGATG	8 cut(s)	112, 624, 987, 1394, 1517, 1649, 1763, 1781
BtsI	GCAGTG	1 cut(s)	1006
BtsIMutI	CAGTG	5 cut(s)	91, 613, 730, 1006, 1100
Cac8I	GCNNGC	1 cut(s)	1056
CfoI	GCGC	2 cut(s)	1240, 1276
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	7 cut(s)	131, 389, 1187, 1463, 1586, 1718, 1844
Cfr9I	CCCGGG	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	684, 694, 1213
CspCI	CAANNNNNGTGG	1 cut(s)	1931
CviQI	GTAC	3 cut(s)	684, 694, 1213
DdeI	CTNAG	8 cut(s)	83, 95, 772, 835, 1014, 1133, 1245, 1281
DraI	TTTAAA	1 cut(s)	865
DraIII	CACNNNGTG	1 cut(s)	899
Eam1104I	CTCTTC	1 cut(s)	1339
EarI	CTCTTC	1 cut(s)	1339
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	4 cut(s)	1327, 1459, 1582, 1714
Eco24I	GRGCYC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	389, 1718
Eco57I	CTGAAG	2 cut(s)	629, 1803
Eco88I	CYCGRG	1 cut(s)	307
EcoT14I	CCWWGG	4 cut(s)	1327, 1459, 1582, 1714
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	4 cut(s)	1327, 1459, 1582, 1714
FauNDI	CATATG	1 cut(s)	1151
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	412
FokI	GGATG	8 cut(s)	119, 631, 974, 1381, 1504, 1636, 1750, 1768
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	1 cut(s)	412
GlaI	GCGC	2 cut(s)	1239, 1275
GluI	GCNGC	1 cut(s)	412
HaeIII	GGCC	6 cut(s)	133, 768, 1188, 1464, 1587, 1845
HapII	CCGG	3 cut(s)	134, 308, 1007
HhaI	GCGC	2 cut(s)	1240, 1276
Hin6I	GCGC	2 cut(s)	1238, 1274
HinP1I	GCGC	2 cut(s)	1238, 1274
HincII	GTYRAC	2 cut(s)	1020, 1030
HindII	GTYRAC	2 cut(s)	1020, 1030
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	4 cut(s)	56, 256, 659, 1162
HpaII	CCGG	3 cut(s)	134, 308, 1007
Hpy166II	GTNNAC	2 cut(s)	1020, 1030
Hpy188I	TCNGA	8 cut(s)	96, 204, 580, 664, 672, 780, 1893, 1914
Hpy8I	GTNNAC	2 cut(s)	1020, 1030
HpyCH4III	ACNGT	4 cut(s)	668, 1104, 1110, 1389
HpyCH4IV	ACGT	2 cut(s)	738, 922
HpyCH4V	TGCA	2 cut(s)	235, 806
HpyF3I	CTNAG	8 cut(s)	83, 95, 772, 835, 1014, 1133, 1245, 1281
HpySE526I	ACGT	2 cut(s)	738, 922
HspAI	GCGC	2 cut(s)	1238, 1274
Ksp22I	TGATCA	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	1339
LmnI	GCTCC	6 cut(s)	643, 1122, 1410, 1533, 1665, 1797
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	3 cut(s)	97, 793, 1146
MaeII	ACGT	2 cut(s)	738, 922
MaeIII	GTNAC	5 cut(s)	635, 889, 1009, 1098, 1104
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	472, 928
MluCI	AATT	9 cut(s)	78, 145, 169, 228, 349, 484, 583, 742, 978
MmeI	TCCRAC	1 cut(s)	475
MseI	TTAA	4 cut(s)	741, 762, 864, 1875
MslI	CAYNNNNRTG	4 cut(s)	1326, 1458, 1581, 1713
MspA1I	CMGCKG	1 cut(s)	1823
MspI	CCGG	3 cut(s)	134, 308, 1007
MspR9I	CCNGG	2 cut(s)	308, 309
NciI	CCSGG	2 cut(s)	308, 309
NcoI	CCATGG	4 cut(s)	1327, 1459, 1582, 1714
NdeI	CATATG	1 cut(s)	1151
NmeAIII	GCCGAG	3 cut(s)	369, 1084, 1878
NmuCI	GTSAC	3 cut(s)	635, 889, 1098
NspI	RCATGY	2 cut(s)	1058, 1805
NspV	TTCGAA	2 cut(s)	142, 259
PaeI	GCATGC	1 cut(s)	1058
PciSI	GCTCTTC	1 cut(s)	1339
PfeI	GAWTC	4 cut(s)	56, 256, 659, 1162
PkrI	GCNGC	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	653
Psp1406I	AACGTT	1 cut(s)	738
PspPI	GGNCC	7 cut(s)	131, 389, 1187, 1463, 1586, 1718, 1844
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	3 cut(s)	685, 695, 1214
RsaNI	GTAC	3 cut(s)	684, 694, 1213
RseI	CAYNNNNRTG	4 cut(s)	1326, 1458, 1581, 1713
SapI	GCTCTTC	1 cut(s)	1339
SaqAI	TTAA	4 cut(s)	741, 762, 864, 1875
SatI	GCNGC	1 cut(s)	412
Sau96I	GGNCC	7 cut(s)	131, 389, 1187, 1463, 1586, 1718, 1844
ScrFI	CCNGG	2 cut(s)	308, 309
SduI	GDGCHC	2 cut(s)	472, 928
SfaNI	GCATC	3 cut(s)	97, 793, 1146
SfuI	TTCGAA	2 cut(s)	142, 259
SinI	GGWCC	2 cut(s)	389, 1718
SmaI	CCCGGG	1 cut(s)	309
SmiMI	CAYNNNNRTG	4 cut(s)	1326, 1458, 1581, 1713
SmlI	CTYRAG	7 cut(s)	295, 1049, 1197, 1233, 1269, 1305, 1560
SmoI	CTYRAG	7 cut(s)	295, 1049, 1197, 1233, 1269, 1305, 1560
SphI	GCATGC	1 cut(s)	1058
Sse9I	AATT	9 cut(s)	78, 145, 169, 228, 349, 484, 583, 742, 978
SsiI	CCGC	7 cut(s)	153, 253, 304, 1643, 1653, 1775, 1823
SspI	AATATT	1 cut(s)	1128
StyD4I	CCNGG	2 cut(s)	306, 307
StyI	CCWWGG	4 cut(s)	1327, 1459, 1582, 1714
TaaI	ACNGT	4 cut(s)	668, 1104, 1110, 1389
TaiI	ACGT	2 cut(s)	741, 925
TaqI	TCGA	6 cut(s)	142, 259, 542, 591, 850, 1926
TasI	AATT	9 cut(s)	78, 145, 169, 228, 349, 484, 583, 742, 978
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	4 cut(s)	56, 256, 659, 1162
Tru1I	TTAA	4 cut(s)	741, 762, 864, 1875
Tru9I	TTAA	4 cut(s)	741, 762, 864, 1875
TscAI	CASTG	5 cut(s)	91, 620, 730, 1006, 1107
TseFI	GTSAC	3 cut(s)	635, 889, 1098
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	3 cut(s)	635, 889, 1098
TspGWI	ACGGA	1 cut(s)	534
TspMI	CCCGGG	1 cut(s)	307
TspRI	CASTG	5 cut(s)	91, 620, 730, 1006, 1107
VpaK11BI	GGWCC	2 cut(s)	389, 1718
XapI	RAATTY	5 cut(s)	78, 145, 169, 228, 978
XceI	RCATGY	2 cut(s)	1058, 1805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1712
XmaI	CCCGGG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.