Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006980

Physical Location & Seq

Genomic Coordinates Forward (+)

46223092 .. 46225185

Gene Structure 2094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGTGGCGGTATAACCATTCCTCCTGATAACTCAACGGGGGAAAAAGACTCCTCCCTGGACCAGGATTCTACCCAACTATCGTCTCCACTTCTCAGAAGTGAATTGAGCATGGGGGCTGAGGAGGGTGCAGTGGATAAACAAAGTCAGAGTGGTTCGGTGTTTGGAGACTATGGCAGACTGCGTGATTTGGACGCCAATGAGAGGATGAGGGAAAATGTTTATAGGAAAATTATGCAGAGTGGTGAGTTATTGGGGATTCGAGGCAAATCGAAAGAGGCTAAGGACAAAATACTGAGCTACACCCCTGGGGCATGGATTGAGACTGCAGGTGCCATGAAAAGGAGGGACTATGATGTGCCAAGGACGACTACTCTATTGTTGGTTGGTCCAAAAGGATCTGGAAAGAGTAGTCTTATTAACAGAATATCAAAGGTGCTTGAAGATGACAAGTTTGCATCAGAAAGAGCACAAGTCTCATTCAATTCATCTATTGGAGATGGAACCCTTTTCCTCCAGGAATGTATGATACCAAGAGGTTCAACTTCGTTTTGCATCTATGATACTCGTAGTCTGTCTGACGATTCAGCTGAAAACATAAAAATGCTGAAGCATTGGATGGAAAATGGTGTTCGTCATGGGCAGCTTGCTATTAGGGATTCAGACAGTCAAAGTTTGAGGACTGCGATGATGTGCAAAGCTCATGACAATGATCATCTTTCCAGTGCGATCAGGAAGGTTAACTTTGTCATATTTGCTGTTAATGGCCTTTCAGTTCTGAAAGCACTGGAAAGTGAGGAAGATGCAGAGACTCAATACACTCGAATGATTGCTTCCATGTTCAACTGCCCATACTTGGCATTTAAAGATGATAAACCTGCTGTTGTTGTCACTCATGGTGATCTACTTTCACATGACGAACGTGCTCGTGTTCGTGTCCATTTGGGAGAACTATTGGGTATTCCACCTACAACCCAAATATTTGACATCCCAGAAAGCAGTGACCCAGTAACTGAGTCCACAACAATTGACATGTTACGCTATTCGCTTGAGCATGCTGATAAAAATTTTACTCATAAGAAAAAGGTATTTTCCTTCATGCACCAGGTTCGTTCTTTTTGTTTAATGAATCACGGCTCTGCTAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

383

Amino Acids

42.54

Weight (kDa)

6.15

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13030 AT4G13030 AT4G13030
fragaria_vesca	FvH4_2g18360 FvH4_2g18360 FvH4_2g18361
malus_domestica	MD05G1169200.v1.1 MD10G1157500.v1.1
prunus_persica	Prupe.8G196400_v2.0.a1 Prupe.8G196400_v2.0.a1
pyrus_communis	pycom05g15680 pycom10g13600
rosa_chinensis	RchiOBHm_Chr6g0283741
rosa_laevigata	RLG00000012802
rosa_multiflora	Rmu_sc0001521.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185220
rosa_rugosa	Rorug06G0157400 Rorug06G0157500
rosa_samantha	Rh6AG269400 Rh6AG269500 Rh6BG271700 Rh6CG271700 Rh6CG271800 Rh6DG265500
rosa_wichuraiana	Rw6G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	320, 886
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	1066
AcuI	CTGAAG	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	4 cut(s)	64, 204, 342, 856
AflIII	ACRYGT	1 cut(s)	1032
AgsI	TTSAA	4 cut(s)	443, 484, 543, 844
AjnI	CCWGG	5 cut(s)	57, 63, 307, 516, 1104
AluBI	AGCT	4 cut(s)	300, 590, 646, 701
AluI	AGCT	4 cut(s)	300, 590, 646, 701
Alw21I	GWGCWC	2 cut(s)	472, 928
Alw26I	GTCTC	5 cut(s)	90, 162, 317, 481, 803
AlwI	GGATC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	1013
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	1 cut(s)	1066
AspS9I	GGNCC	2 cut(s)	61, 389
AsuHPI	GGTGA	2 cut(s)	257, 911
AvaII	GGWCC	2 cut(s)	61, 389
BanI	GGYRCC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	927
Bbv12I	GWGCWC	2 cut(s)	472, 928
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	2 cut(s)	494, 613
BceAI	ACGGC	1 cut(s)	1150
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	5 cut(s)	59, 65, 309, 518, 1106
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	5 cut(s)	90, 162, 317, 481, 803
BfaI	CTAG	1 cut(s)	1143
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	2 cut(s)	320, 886
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
Bme1390I	CCNGG	5 cut(s)	59, 65, 309, 518, 1106
Bme18I	GGWCC	2 cut(s)	61, 389
BmgT120I	GGNCC	2 cut(s)	61, 389
BmiI	GGNNCC	2 cut(s)	334, 505
BmrFI	CCNGG	5 cut(s)	59, 65, 309, 518, 1106
BmrI	ACTGGG	1 cut(s)	1001
BmsI	GCATC	3 cut(s)	467, 564, 793
BmuI	ACTGGG	1 cut(s)	1001
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	2 cut(s)	120, 282
BpuEI	CTTGAG	1 cut(s)	1070
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	57, 307, 308, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 204, 342, 856
Bse1I	ACTGG	3 cut(s)	723, 792, 1007
BseBI	CCWGG	5 cut(s)	59, 65, 309, 518, 1106
BseDI	CCNNGG	4 cut(s)	57, 307, 308, 362
BseGI	GGATG	3 cut(s)	213, 624, 987
BseLI	CCNNNNNNNGG	4 cut(s)	64, 204, 342, 856
BseMII	CTCAG	4 cut(s)	109, 111, 287, 1005
BseNI	ACTGG	3 cut(s)	723, 792, 1007
BseRI	GAGGAG	2 cut(s)	43, 137
BseXI	GCAGC	1 cut(s)	655
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	472, 928
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	4 cut(s)	64, 204, 342, 856
BsmAI	GTCTC	5 cut(s)	90, 162, 317, 481, 803
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	768
Bsp1286I	GDGCHC	2 cut(s)	472, 928
Bsp143I	GATC	4 cut(s)	398, 712, 729, 901
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	4 cut(s)	108, 112, 288, 1006
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	334, 505
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	2 cut(s)	320, 886
BspPI	GGATC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	723, 792, 1007
BssECI	CCNNGG	4 cut(s)	57, 307, 308, 362
BssMI	GATC	4 cut(s)	398, 712, 729, 901
BssNI	GRCGYC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	927
BssT1I	CCWWGG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	927
Bst2UI	CCWGG	5 cut(s)	59, 65, 309, 518, 1106
Bst4CI	ACNGT	1 cut(s)	668
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	648, 1056
BstDEI	CTNAG	5 cut(s)	95, 120, 282, 296, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	3 cut(s)	213, 624, 987
BstKTI	GATC	4 cut(s)	401, 715, 732, 904
BstMAI	GTCTC	5 cut(s)	90, 162, 317, 481, 803
BstMBI	GATC	4 cut(s)	398, 712, 729, 901
BstNI	CCWGG	5 cut(s)	59, 65, 309, 518, 1106
BstNSI	RCATGY	2 cut(s)	1036, 1058
BstSCI	CCNGG	5 cut(s)	57, 63, 307, 516, 1104
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	655
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	768
BtgZI	GCGATG	1 cut(s)	701
BtsCI	GGATG	3 cut(s)	213, 624, 987
BtsI	GCAGTG	2 cut(s)	138, 1006
BtsIMutI	CAGTG	4 cut(s)	138, 730, 785, 1006
BveI	ACCTGC	2 cut(s)	320, 886
Cac8I	GCNNGC	2 cut(s)	648, 1056
CaiI	CAGNNNCTG	1 cut(s)	1013
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	61, 389
CseI	GACGC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	1104
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviJI	RGCY	8 cut(s)	119, 281, 300, 590, 646, 701, 768, 1137
CviKI_1	RGCY	8 cut(s)	119, 281, 300, 590, 646, 701, 768, 1137
DdeI	CTNAG	5 cut(s)	95, 120, 282, 296, 1014
DpnI	GATC	4 cut(s)	400, 714, 731, 903
DpnII	GATC	4 cut(s)	398, 712, 729, 901
DraI	TTTAAA	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	61, 389
Eco57I	CTGAAG	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoRII	CCWGG	5 cut(s)	57, 63, 307, 516, 1104
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	90
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	644
FokI	GGATG	3 cut(s)	220, 631, 974
Fsp4HI	GCNGC	1 cut(s)	644
FspBI	CTAG	1 cut(s)	1143
GluI	GCNGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	768
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	8 cut(s)	50, 68, 259, 584, 659, 811, 1016, 1129
HpaI	GTTAAC	1 cut(s)	742
HphI	GGTGA	2 cut(s)	257, 911
Hpy166II	GTNNAC	2 cut(s)	742, 1020
Hpy188I	TCNGA	6 cut(s)	98, 150, 463, 580, 664, 780
Hpy188III	TCNNGA	4 cut(s)	26, 402, 704, 733
Hpy8I	GTNNAC	2 cut(s)	742, 1020
HpyAV	CCTTC	2 cut(s)	730, 1105
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	8 cut(s)	131, 238, 329, 458, 555, 696, 806, 1102
HpyF3I	CTNAG	5 cut(s)	95, 120, 282, 296, 1014
HpySE526I	ACGT	1 cut(s)	922
Hsp92I	GRCGYC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	712
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	398, 712, 729, 901
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	3 cut(s)	467, 564, 793
MabI	ACCWGGT	1 cut(s)	1104
MaeI	CTAG	1 cut(s)	1143
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	4 cut(s)	889, 1001, 1009, 1035
MalI	GATC	4 cut(s)	400, 714, 731, 903
MboI	GATC	4 cut(s)	398, 712, 729, 901
MboII	GAAGA	2 cut(s)	455, 812
MfeI	CAATTG	1 cut(s)	1026
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	472, 928
MluCI	AATT	5 cut(s)	104, 231, 484, 1026, 1066
MlyI	GAGTC	3 cut(s)	44, 805, 1025
MseI	TTAA	6 cut(s)	420, 741, 762, 864, 1124, 1150
MslI	CAYNNNNRTG	3 cut(s)	602, 708, 824
MspA1I	CMGCKG	1 cut(s)	590
MspR9I	CCNGG	5 cut(s)	59, 65, 309, 518, 1106
MunI	CAATTG	1 cut(s)	1026
MvaI	CCWGG	5 cut(s)	59, 65, 309, 518, 1106
NdeII	GATC	4 cut(s)	398, 712, 729, 901
NlaIV	GGNNCC	2 cut(s)	334, 505
NmuCI	GTSAC	2 cut(s)	889, 1001
NspI	RCATGY	2 cut(s)	1036, 1058
PaeI	GCATGC	1 cut(s)	1058
PagI	TCATGA	1 cut(s)	703
PaqCI	CACCTGC	1 cut(s)	320
PasI	CCCWGGG	1 cut(s)	308
PciI	ACATGT	1 cut(s)	1032
PfeI	GAWTC	5 cut(s)	68, 259, 584, 659, 1129
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	645
PleI	GAGTC	3 cut(s)	44, 805, 1024
PpsI	GAGTC	3 cut(s)	44, 805, 1024
PscI	ACATGT	1 cut(s)	1032
Psp6I	CCWGG	5 cut(s)	57, 63, 307, 516, 1104
PspGI	CCWGG	5 cut(s)	57, 63, 307, 516, 1104
PspN4I	GGNNCC	2 cut(s)	334, 505
PspPI	GGNCC	2 cut(s)	61, 389
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	590
RseI	CAYNNNNRTG	3 cut(s)	602, 708, 824
SaqAI	TTAA	6 cut(s)	420, 741, 762, 864, 1124, 1150
SatI	GCNGC	1 cut(s)	644
Sau3AI	GATC	4 cut(s)	398, 712, 729, 901
Sau96I	GGNCC	2 cut(s)	61, 389
SchI	GAGTC	3 cut(s)	44, 805, 1025
ScrFI	CCNGG	5 cut(s)	59, 65, 309, 518, 1106
SduI	GDGCHC	2 cut(s)	472, 928
SexAI	ACCWGGT	1 cut(s)	1104
SfaNI	GCATC	3 cut(s)	467, 564, 793
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	2 cut(s)	61, 389
SmiMI	CAYNNNNRTG	3 cut(s)	602, 708, 824
SmlI	CTYRAG	1 cut(s)	1049
SmoI	CTYRAG	1 cut(s)	1049
SphI	GCATGC	1 cut(s)	1058
Sse9I	AATT	5 cut(s)	104, 231, 484, 1026, 1066
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	981
SspMI	CTAG	1 cut(s)	1143
StyD4I	CCNGG	5 cut(s)	57, 63, 307, 516, 1104
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	3 cut(s)	262, 272, 823
TasI	AATT	5 cut(s)	104, 231, 484, 1026, 1066
TfiI	GAWTC	5 cut(s)	68, 259, 584, 659, 1129
Tru1I	TTAA	6 cut(s)	420, 741, 762, 864, 1124, 1150
Tru9I	TTAA	6 cut(s)	420, 741, 762, 864, 1124, 1150
TscAI	CASTG	4 cut(s)	138, 730, 792, 1006
TseFI	GTSAC	2 cut(s)	889, 1001
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	2 cut(s)	889, 1001
TspDTI	ATGAA	4 cut(s)	353, 477, 1087, 1142
TspRI	CASTG	4 cut(s)	138, 730, 792, 1006
VpaK11BI	GGWCC	2 cut(s)	61, 389
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	2 cut(s)	1036, 1058
XspI	CTAG	1 cut(s)	1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.