Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006980

Physical Location & Seq

Genomic Coordinates Forward (+)

29909597 .. 29912737

Gene Structure 3141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1169200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGGTGGCGATGGCGGAGTTACTGGGGAACAAGAAGAAGACTCCTCACTCAGCGAAGATTCCTCCCAACTCTCATCACAACTTCTAAGAAATGGTGTGAGCATGAATATGGAGGATGATGCAGTGGATGAACAAACTGGGCCGGGTTTTCGAAAATTTTGCGGAGTGGGAAGTCAAATTTCTTCCGCTTCTTTGGATTTTGAAGCCGATCAGAGGATGGAAAATGTTTATAGGAAGATTTTGCAGAGTTATGATGACTTGCGGATTCGAAGCAAAGATTTGGAAGAAGCCAAGAGCAAAATCTTGAGCTACACCCCCGGTGCGTGGATTGATAGAGTAGGTGCTGTGAAACCGAGGGACTATGATGTGCCAAATACAACAACACTTTTATTGGTTGGTCCAAAAGGATCTGGAAAGAGCAGTCTTGTAAATAGAATCTCGAAGGTGTTTGAAGATGACAAGTTTGCCTCGGAAAGAGCCCAAGTATCATATAATTCATCTCTTGGAGATGGAACCTTTTTCCTGCATGAATATATGATGCCAAGATGTTCGAGTTCTTTTTGCCTTTATGATACTCGTAGTTTGTCTGATAATTCACCTGAAAACATAAAAATACTGAAGCATTGGATGGAACATGGTGTTCGTCATGGGGAGCTTGTTGTCAGGGATTCAGACAGTCCAAGTTTGAGGAACACAATGATGTACAAAGATCGTGATGATGGTTATCTGTCCAGTGAGATCAAGAACGTTAATTTTGTCATATTTGTTGTTAATGGCCTTTCAGTTCTGAAATCAATGGAAAGCAATGAAGATGCAGAGACACAATATACTGAAATGATCGCCTCAGCTTTCAAATCTCGATACTTGGCATTTAAAGATGATAAACCCCTTCTTGTTGTTACACATGGTGATTTACTTTCACTTGATGAACGTGCTCATGTTCGTGTCCATTTGGGAGAACTGCTTGGTATTCCTCCTACAACTCAAATTTTTGACATCCCAGAAAGCAGTGATGCAGTAACTCAGTTGACAATAGTTGACATGATACGCTATTCGCTTGAGCATGCCGAGAAAAATCTTCCTCGTAAAAGAAAGGTCGAAACTTTCTCACTGTTATCATGTATGCTCCTGCTAATATTCCTCAGCATTGCCATAACGATCATGTATGCTCCTGCTAATATTCTTCAGCACGGCTACTGCCCTTGGCCTCAAGCGCATATTCAACATTGCCATGTCCCTTCACCGCAAGCACACATTCACAATAACCCCTCACCGCCTTCATCCACTTCGCTCGAAGAGCATATTCAGCGTGATCCTTCGGCGGAAGAGCATATCGACAATAGCCCCTTGCCGAGAGTAGAACTTCGTAATAGTAAAACGAAACTTCAGAATATCCGGATCGACTGGAGTAAAATCCGACACTTGTGGTTAGACGACAGGATCGAATGGAGTAAAATCCGACACTTGTGGTTAGACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

494

Amino Acids

55.86

Weight (kDa)

5.48

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13030 AT4G13030 AT4G13030
fragaria_vesca	FvH4_2g18360 FvH4_2g18360 FvH4_2g18361
malus_domestica	MD05G1169200.v1.1 MD10G1157500.v1.1
prunus_persica	Prupe.8G196400_v2.0.a1 Prupe.8G196400_v2.0.a1
pyrus_communis	pycom05g15680 pycom10g13600
rosa_chinensis	RchiOBHm_Chr6g0283741
rosa_laevigata	RLG00000012802
rosa_multiflora	Rmu_sc0001521.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185220
rosa_rugosa	Rorug06G0157400 Rorug06G0157500
rosa_samantha	Rh6AG269400 Rh6AG269500 Rh6BG271700 Rh6CG271700 Rh6CG271800 Rh6DG265500
rosa_wichuraiana	Rw6G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1395
AciI	CCGC	7 cut(s)	15, 162, 186, 262, 1244, 1274, 1322
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	4 cut(s)	415, 1307, 1406, 1448
AcsI	RAATTY	3 cut(s)	155, 177, 987
AcuI	CTGAAG	3 cut(s)	638, 1169, 1370
AdeI	CACNNNGTG	1 cut(s)	908
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	2 cut(s)	213, 324
AgsI	TTSAA	4 cut(s)	203, 452, 853, 1223
AluBI	AGCT	3 cut(s)	309, 655, 848
AluI	AGCT	3 cut(s)	309, 655, 848
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	4 cut(s)	415, 1307, 1406, 1448
Aor13HI	TCCGGA	1 cut(s)	1395
AoxI	GGCC	3 cut(s)	140, 775, 1205
ApoI	RAATTY	3 cut(s)	155, 177, 987
AspLEI	GCGC	1 cut(s)	1216
AspS9I	GGNCC	2 cut(s)	140, 398
AsuC2I	CCSGG	2 cut(s)	144, 318
AsuHPI	GGTGA	4 cut(s)	588, 920, 1233, 1263
AsuII	TTCGAA	2 cut(s)	151, 268
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	937
BbvCI	CCTCAGC	2 cut(s)	844, 1142
BccI	CCATC	5 cut(s)	5, 211, 503, 622, 713
BceAI	ACGGC	1 cut(s)	1207
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BcnI	CCSGG	2 cut(s)	144, 318
BcoDI	GTCTC	1 cut(s)	812
Bme1390I	CCNGG	2 cut(s)	144, 318
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	140, 398
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	144, 318
BmrI	ACTGGG	2 cut(s)	33, 147
BmsI	GCATC	4 cut(s)	109, 528, 802, 1003
BmuI	ACTGGG	2 cut(s)	33, 147
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	1426
Bpu10I	CCTNAGC	2 cut(s)	844, 1142
Bpu14I	TTCGAA	2 cut(s)	151, 268
BpuEI	CTTGAG	3 cut(s)	325, 1079, 1194
BpuMI	CCSGG	2 cut(s)	144, 318
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	4 cut(s)	316, 353, 468, 1202
BsaWI	WCCGGW	1 cut(s)	1395
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 324
Bse1I	ACTGG	4 cut(s)	28, 142, 732, 1409
Bse3DI	GCAATG	3 cut(s)	811, 1146, 1225
Bse8I	GATNNNNATC	1 cut(s)	723
BseAI	TCCGGA	1 cut(s)	1395
BseDI	CCNNGG	4 cut(s)	316, 353, 468, 1202
BseGI	GGATG	6 cut(s)	121, 133, 222, 633, 996, 1280
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	2 cut(s)	213, 324
BseMI	GCAATG	3 cut(s)	811, 1146, 1225
BseMII	CTCAG	4 cut(s)	64, 858, 1037, 1156
BseNI	ACTGG	4 cut(s)	28, 142, 732, 1409
BseRI	GAGGAG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	142, 777, 1207
BsiHKAI	GWGCWC	1 cut(s)	937
BsiSI	CCGG	3 cut(s)	143, 318, 1396
BslFI	GGGAC	2 cut(s)	371, 1220
BslI	CCNNNNNNNGG	2 cut(s)	213, 324
BsmAI	GTCTC	1 cut(s)	812
BsmFI	GGGAC	2 cut(s)	371, 1220
BsnI	GGCC	3 cut(s)	142, 777, 1207
Bsp119I	TTCGAA	2 cut(s)	151, 268
Bsp1286I	GDGCHC	2 cut(s)	481, 937
Bsp13I	TCCGGA	1 cut(s)	1395
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
BspACI	CCGC	7 cut(s)	15, 162, 186, 262, 1244, 1274, 1322
BspANI	GGCC	3 cut(s)	142, 777, 1207
BspCNI	CTCAG	4 cut(s)	63, 857, 1036, 1155
BspEI	TCCGGA	1 cut(s)	1395
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	4 cut(s)	415, 1307, 1406, 1448
BspQI	GCTCTTC	2 cut(s)	1290, 1320
BspT104I	TTCGAA	2 cut(s)	151, 268
BsrDI	GCAATG	3 cut(s)	811, 1146, 1225
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	4 cut(s)	28, 142, 732, 1409
BssECI	CCNNGG	4 cut(s)	316, 353, 468, 1202
BssMI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
BssT1I	CCWWGG	1 cut(s)	1202
Bst4CI	ACNGT	2 cut(s)	677, 1113
Bst6I	CTCTTC	2 cut(s)	1290, 1320
BstAUI	TGTACA	1 cut(s)	702
BstBI	TTCGAA	2 cut(s)	151, 268
BstC8I	GCNNGC	2 cut(s)	1065, 1248
BstDEI	CTNAG	5 cut(s)	50, 86, 844, 1023, 1142
BstF5I	GGATG	6 cut(s)	121, 133, 222, 633, 996, 1280
BstHHI	GCGC	1 cut(s)	1216
BstKTI	GATC	9 cut(s)	211, 410, 712, 741, 840, 1161, 1315, 1401, 1443
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
BstMWI	GCNNNNNNNGC	3 cut(s)	1213, 1297, 1306
BstNSI	RCATGY	1 cut(s)	1067
BstSCI	CCNGG	2 cut(s)	142, 316
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	142, 777, 1207
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	6 cut(s)	121, 133, 222, 633, 996, 1280
BtsI	GCAGTG	2 cut(s)	129, 1015
BtsIMutI	CAGTG	4 cut(s)	129, 739, 1015, 1109
Cac8I	GCNNGC	2 cut(s)	1065, 1248
CfoI	GCGC	1 cut(s)	1216
Cfr13I	GGNCC	2 cut(s)	140, 398
Csp6I	GTAC	1 cut(s)	703
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	5 cut(s)	50, 86, 844, 1023, 1142
DpnI	GATC	9 cut(s)	210, 409, 711, 740, 839, 1160, 1314, 1400, 1442
DpnII	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
DraI	TTTAAA	1 cut(s)	874
DraIII	CACNNNGTG	1 cut(s)	908
Eam1104I	CTCTTC	2 cut(s)	1290, 1320
EarI	CTCTTC	2 cut(s)	1290, 1320
EciI	GGCGGA	2 cut(s)	30, 1337
Eco130I	CCWWGG	1 cut(s)	1202
Eco24I	GRGCYC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	3 cut(s)	638, 1169, 1370
EcoT14I	CCWWGG	1 cut(s)	1202
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	1202
FaqI	GGGAC	2 cut(s)	371, 1220
FokI	GGATG	6 cut(s)	128, 140, 229, 640, 983, 1267
FriOI	GRGCYC	1 cut(s)	481
GlaI	GCGC	1 cut(s)	1215
GsuI	CTGGAG	1 cut(s)	1426
HaeIII	GGCC	3 cut(s)	142, 777, 1207
HapII	CCGG	3 cut(s)	143, 318, 1396
HhaI	GCGC	1 cut(s)	1216
Hin6I	GCGC	1 cut(s)	1214
HinP1I	GCGC	1 cut(s)	1214
HincII	GTYRAC	2 cut(s)	1029, 1039
HindII	GTYRAC	2 cut(s)	1029, 1039
HinfI	GANTC	5 cut(s)	41, 59, 265, 435, 668
HpaII	CCGG	3 cut(s)	143, 318, 1396
HphI	GGTGA	4 cut(s)	588, 920, 1233, 1263
Hpy166II	GTNNAC	2 cut(s)	1029, 1039
Hpy188I	TCNGA	8 cut(s)	213, 472, 589, 673, 789, 1389, 1418, 1460
Hpy188III	TCNNGA	7 cut(s)	304, 411, 439, 713, 742, 858, 1396
Hpy8I	GTNNAC	2 cut(s)	1029, 1039
HpyAV	CCTTC	5 cut(s)	436, 899, 1248, 1287, 1326
HpyCH4III	ACNGT	2 cut(s)	677, 1113
HpyCH4IV	ACGT	2 cut(s)	747, 931
HpyCH4V	TGCA	5 cut(s)	122, 244, 526, 815, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1213, 1297, 1306
HpyF3I	CTNAG	5 cut(s)	50, 86, 844, 1023, 1142
HpySE526I	ACGT	2 cut(s)	747, 931
HspAI	GCGC	1 cut(s)	1214
Kpn2I	TCCGGA	1 cut(s)	1395
Kzo9I	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
LguI	GCTCTTC	2 cut(s)	1290, 1320
LmnI	GCTCC	3 cut(s)	652, 1131, 1174
LweI	GCATC	4 cut(s)	109, 528, 802, 1003
MaeII	ACGT	2 cut(s)	747, 931
MaeIII	GTNAC	3 cut(s)	19, 898, 1018
MalI	GATC	9 cut(s)	210, 409, 711, 740, 839, 1160, 1314, 1400, 1442
MboI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	481, 937
MluCI	AATT	6 cut(s)	155, 177, 493, 592, 751, 987
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	1441
MroI	TCCGGA	1 cut(s)	1395
MseI	TTAA	3 cut(s)	750, 771, 873
MslI	CAYNNNNRTG	4 cut(s)	107, 698, 942, 1230
MspI	CCGG	3 cut(s)	143, 318, 1396
MspR9I	CCNGG	2 cut(s)	144, 318
MwoI	GCNNNNNNNGC	3 cut(s)	1213, 1297, 1306
NciI	CCSGG	2 cut(s)	144, 318
NdeII	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
NlaIV	GGNNCC	1 cut(s)	514
NmeAIII	GCCGAG	2 cut(s)	1093, 1377
NspI	RCATGY	1 cut(s)	1067
NspV	TTCGAA	2 cut(s)	151, 268
PaeI	GCATGC	1 cut(s)	1067
PciSI	GCTCTTC	2 cut(s)	1290, 1320
PcsI	WCGNNNNNNNCGW	1 cut(s)	1440
PfeI	GAWTC	4 cut(s)	59, 265, 435, 668
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	2 cut(s)	140, 398
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
RseI	CAYNNNNRTG	4 cut(s)	107, 698, 942, 1230
SapI	GCTCTTC	2 cut(s)	1290, 1320
SaqAI	TTAA	3 cut(s)	750, 771, 873
Sau3AI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1312, 1398, 1440
Sau96I	GGNCC	2 cut(s)	140, 398
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	144, 318
SduI	GDGCHC	2 cut(s)	481, 937
SfaNI	GCATC	4 cut(s)	109, 528, 802, 1003
SfuI	TTCGAA	2 cut(s)	151, 268
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	4 cut(s)	107, 698, 942, 1230
SmlI	CTYRAG	3 cut(s)	304, 1058, 1209
SmoI	CTYRAG	3 cut(s)	304, 1058, 1209
SphI	GCATGC	1 cut(s)	1067
Sse9I	AATT	6 cut(s)	155, 177, 493, 592, 751, 987
SsiI	CCGC	7 cut(s)	15, 162, 186, 262, 1244, 1274, 1322
SspI	AATATT	2 cut(s)	1137, 1180
StyD4I	CCNGG	2 cut(s)	142, 316
StyI	CCWWGG	1 cut(s)	1202
TaaI	ACNGT	2 cut(s)	677, 1113
TaiI	ACGT	2 cut(s)	750, 934
TasI	AATT	6 cut(s)	155, 177, 493, 592, 751, 987
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	4 cut(s)	59, 265, 435, 668
Tru1I	TTAA	3 cut(s)	750, 771, 873
Tru9I	TTAA	3 cut(s)	750, 771, 873
TscAI	CASTG	4 cut(s)	129, 739, 1015, 1116
TspDTI	ATGAA	7 cut(s)	119, 144, 486, 543, 822, 942, 1269
TspRI	CASTG	4 cut(s)	129, 739, 1015, 1116
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	3 cut(s)	155, 177, 987
XceI	RCATGY	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.