Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006980

Physical Location & Seq

Genomic Coordinates Forward (+)

17068549 .. 17071508

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGGGTGGCGATGGCAGAGATACAGGGCAAGAAGAAGACTTCTTACTCGACCAAGACTCCCCCCAACTTTCATCACAAATTCTAAGTGATGGTCTGAGTGTCAAGGATGCTGTGATCGATCAACAAAATGCGCCGGTTTTTCGAAATTTTGGCGGATTGGGAAGTCAAAAGTCTTCTGCTTCTGTGGATTTTGAAGCTGATCAGAGGAGGGAAAGTGTTTATAGGAAAATTTTGCAGGGTTATGATGACTTGCGGATTCGAAGCAAAGATTTGGAAGAAGCCAAGAGCAAAATCTTGAGCTACCGCCCGGGTGCGTGGATTGATAGAGTAGGTTCTGTGAAGCCGAGGAATTATGATGTGCCAAAGACGACAACGCTTTTATTGGTTGGTCCAAAAGGATCTGGAAAGAGCAGTCTTGTAAATAGAATATCGAAAGTGTTTGAAGATGACGAGTTTGCCTCTGAAAGAGCCCAAGTATCATATAATTCATCTGTTGGAGAAGGAACTTTTTTCCTCCACGGATATATGATACCACGATGTTCGAGTTCTTTTTGCCTTTATGATACCCGTAGTTTGTCTGATAATTCACTCGAAAACATAATAATACTGAAGCACTGGATGGAAAATGGTGTTCGTCACGGGGAGCTTGTTATGAGGGATTCAGACAGTCAAAGTTTGAGGAAAACGATGATGTACAAAGCTCGTGATGATGGTTATCTGTCCAGTGAGATCAGGAGCGTTAATTTTGTCATATTTGTTGTTAATGGCCTCTCAGTTCTGAAATCAATGGAAGGCGATGAAGATGCAGAGACACGATATACCGAAATGATCGCCTCAGCTTTCAACTCTGGATACTTGGCATTTAAAGATGATAAACCCCTTCTTGTCGTCACACATGGTGATTTACTTTCACTTGATGAACGTGCTCGTGTTCGTGTCCATTTGGGAGAACTGCTTGGTATTCCTCCCACAACTCAAATTTTTGACATCCCAGAAAGCAGTGATCGGGTAACTAAGTTGACAATAGTTGACATGATACGCTATTCGCTTGAGCATGCCGAGAAAAATCTTCCTCGTAGAAGAAAGGTTGATACTTTGTCACTGTTACCGTGTATGCTCCTGCTAATATTCCTCAGCATCGCCACAAATATATGGTCTATGAATCATCTTCCAGATATTCAGCACGGCCCTTCGCCTCAAGCGCATATTCAGTACGGCTACTGCCCTTCGCCTCAAGCGCATACTCAGCACGGCTACTGCCCTTCGCCTGAACCACATATTCAGCATTGCCATGGCTCTTCACCCCAAGCACATATTCACGATAACCTTTCACCCCCTTCACCGTCTTCATCCACCTTGCTCCAAGAACATATTCAGCATGATCCTTCGCCCCAAGCACATATTCAGCATTGCCATGGCCCTTCACCCCTTTCACCCCCTTCACCGCTTTCATCCGCTTTGCTCCAAGAGCATATTCAGCATGATCCTTCGGCCCAAGCACATATCCAGCATAGCCATGGTCCTTCACCCCAAGCACATATTCACGACAACCCTTCACCGATTTCATCCCCTTCACCGCCTTCATCCCCTTTGCTCCAAGAGCATGTTCAGCATGATCCTTCAGCGGAAGAGCATATTTACAATGGCCCTTTGCCGAGAGTAGAACTTCTCAAGATTAAAAAGAAACTTTATCAGACCAGAACAAAAATTCATCAGAAGATGAGGATCGAATGGAGTAAAATCCGACACTTGTGGTTAGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

589

Amino Acids

65.93

Weight (kDa)

6.21

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13030 AT4G13030 AT4G13030
fragaria_vesca	FvH4_2g18360 FvH4_2g18360 FvH4_2g18361
malus_domestica	MD05G1169200.v1.1 MD10G1157500.v1.1
prunus_persica	Prupe.8G196400_v2.0.a1 Prupe.8G196400_v2.0.a1
pyrus_communis	pycom05g15680 pycom10g13600
rosa_chinensis	RchiOBHm_Chr6g0283741
rosa_laevigata	RLG00000012802
rosa_multiflora	Rmu_sc0001521.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185220
rosa_rugosa	Rorug06G0157400 Rorug06G0157500
rosa_samantha	Rh6AG269400 Rh6AG269500 Rh6BG271700 Rh6CG271700 Rh6CG271800 Rh6DG265500
rosa_wichuraiana	Rw6G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	153, 253, 304, 1445, 1455, 1577, 1625
AclWI	GGATC	5 cut(s)	406, 1376, 1478, 1610, 1733
AcsI	RAATTY	5 cut(s)	78, 145, 228, 978, 1707
AcuI	CTGAAG	2 cut(s)	629, 1605
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	2 cut(s)	695, 1214
AgsI	TTSAA	3 cut(s)	194, 443, 844
AluBI	AGCT	5 cut(s)	197, 300, 646, 701, 839
AluI	AGCT	5 cut(s)	197, 300, 646, 701, 839
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	5 cut(s)	406, 1376, 1478, 1610, 1733
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	5 cut(s)	766, 1186, 1417, 1491, 1645
ApoI	RAATTY	5 cut(s)	78, 145, 228, 978, 1707
ArsI	GACNNNNNNTTYG	2 cut(s)	1139, 1171
Asp700I	GAANNNNTTC	1 cut(s)	1371
AspLEI	GCGC	3 cut(s)	133, 1204, 1240
AspS9I	GGNCC	6 cut(s)	389, 1187, 1418, 1492, 1520, 1646
AsuC2I	CCSGG	2 cut(s)	308, 309
AsuII	TTCGAA	2 cut(s)	142, 259
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	389, 1520
BanII	GRGCYC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BauI	CACGAG	2 cut(s)	702, 927
BbsI	GAAGAC	3 cut(s)	42, 165, 1338
Bbv12I	GWGCWC	1 cut(s)	928
BbvCI	CCTCAGC	2 cut(s)	835, 1133
BccI	CCATC	4 cut(s)	5, 83, 613, 704
BceAI	ACGGC	3 cut(s)	1201, 1231, 1267
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciVI	GTATCC	1 cut(s)	845
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	308, 309
BcoDI	GTCTC	1 cut(s)	803
BfuI	GTATCC	1 cut(s)	845
Bme1390I	CCNGG	2 cut(s)	308, 309
Bme18I	GGWCC	2 cut(s)	389, 1520
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	6 cut(s)	389, 1187, 1418, 1492, 1520, 1646
BmrFI	CCNGG	2 cut(s)	308, 309
BmsI	GCATC	3 cut(s)	97, 793, 1146
BpiI	GAAGAC	3 cut(s)	42, 165, 1338
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
Bpu10I	CCTNAGC	2 cut(s)	835, 1133
Bpu14I	TTCGAA	2 cut(s)	142, 259
BpuEI	CTTGAG	5 cut(s)	316, 1070, 1182, 1218, 1655
BpuMI	CCSGG	2 cut(s)	308, 309
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	2 cut(s)	714, 1724
BsaJI	CCNNGG	6 cut(s)	307, 344, 517, 1291, 1414, 1516
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 199, 229
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	620, 723
Bse3DI	GCAATG	2 cut(s)	1285, 1408
Bse8I	GATNNNNATC	2 cut(s)	714, 1724
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	6 cut(s)	307, 344, 517, 1291, 1414, 1516
BseGI	GGATG	7 cut(s)	112, 624, 987, 1349, 1451, 1565, 1583
BseJI	GATNNNNATC	2 cut(s)	714, 1724
BseMI	GCAATG	2 cut(s)	1285, 1408
BseMII	CTCAG	5 cut(s)	86, 786, 849, 1147, 1259
BseNI	ACTGG	2 cut(s)	620, 723
BseRI	GAGGAG	1 cut(s)	220
BshFI	GGCC	5 cut(s)	768, 1188, 1419, 1493, 1647
BshVI	ATCGAT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	928
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	134, 308
BsmAI	GTCTC	1 cut(s)	803
BsnI	GGCC	5 cut(s)	768, 1188, 1419, 1493, 1647
BsoBI	CYCGRG	1 cut(s)	307
Bsp119I	TTCGAA	2 cut(s)	142, 259
Bsp1286I	GDGCHC	2 cut(s)	472, 928
Bsp1407I	TGTACA	1 cut(s)	693
Bsp19I	CCATGG	3 cut(s)	1291, 1414, 1516
BspACI	CCGC	7 cut(s)	153, 253, 304, 1445, 1455, 1577, 1625
BspANI	GGCC	5 cut(s)	768, 1188, 1419, 1493, 1647
BspCNI	CTCAG	5 cut(s)	87, 785, 848, 1146, 1258
BspDI	ATCGAT	1 cut(s)	117
BspPI	GGATC	5 cut(s)	406, 1376, 1478, 1610, 1733
BspQI	GCTCTTC	2 cut(s)	1303, 1623
BspT104I	TTCGAA	2 cut(s)	142, 259
BsrDI	GCAATG	2 cut(s)	1285, 1408
BsrFI	RCCGGY	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	620, 723
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	6 cut(s)	307, 344, 517, 1291, 1414, 1516
BssSI	CACGAG	2 cut(s)	702, 927
BssT1I	CCWWGG	3 cut(s)	1291, 1414, 1516
Bst2BI	CACGAG	2 cut(s)	702, 927
Bst4CI	ACNGT	4 cut(s)	668, 1104, 1110, 1344
Bst6I	CTCTTC	2 cut(s)	1303, 1623
BstAUI	TGTACA	1 cut(s)	693
BstBI	TTCGAA	2 cut(s)	142, 259
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	7 cut(s)	83, 95, 772, 835, 1014, 1133, 1245
BstDSI	CCRYGG	4 cut(s)	517, 1291, 1414, 1516
BstF5I	GGATG	7 cut(s)	112, 624, 987, 1349, 1451, 1565, 1583
BstHHI	GCGC	3 cut(s)	133, 1204, 1240
BstMAI	GTCTC	1 cut(s)	803
BstMWI	GCNNNNNNNGC	7 cut(s)	1201, 1237, 1246, 1468, 1477, 1600, 1609
BstNSI	RCATGY	2 cut(s)	1058, 1607
BstSCI	CCNGG	2 cut(s)	306, 307
BstV2I	GAAGAC	3 cut(s)	42, 165, 1338
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	845
BsuRI	GGCC	5 cut(s)	768, 1188, 1419, 1493, 1647
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	4 cut(s)	517, 1291, 1414, 1516
BtgZI	GCGATG	3 cut(s)	24, 810, 1123
BtsCI	GGATG	7 cut(s)	112, 624, 987, 1349, 1451, 1565, 1583
BtsI	GCAGTG	1 cut(s)	1006
BtsIMutI	CAGTG	4 cut(s)	613, 730, 1006, 1100
Cac8I	GCNNGC	1 cut(s)	1056
CfoI	GCGC	3 cut(s)	133, 1204, 1240
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	6 cut(s)	389, 1187, 1418, 1492, 1520, 1646
Cfr9I	CCCGGG	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	694, 1213
CviQI	GTAC	2 cut(s)	694, 1213
DdeI	CTNAG	7 cut(s)	83, 95, 772, 835, 1014, 1133, 1245
DraI	TTTAAA	1 cut(s)	865
DraIII	CACNNNGTG	1 cut(s)	899
Eam1104I	CTCTTC	2 cut(s)	1303, 1623
EarI	CTCTTC	2 cut(s)	1303, 1623
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	3 cut(s)	1291, 1414, 1516
Eco24I	GRGCYC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	389, 1520
Eco57I	CTGAAG	2 cut(s)	629, 1605
Eco88I	CYCGRG	1 cut(s)	307
EcoT14I	CCWWGG	3 cut(s)	1291, 1414, 1516
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	3 cut(s)	1291, 1414, 1516
FbaI	TGATCA	1 cut(s)	199
FokI	GGATG	7 cut(s)	119, 631, 974, 1336, 1438, 1552, 1570
FriOI	GRGCYC	1 cut(s)	472
GlaI	GCGC	3 cut(s)	132, 1203, 1239
HaeIII	GGCC	5 cut(s)	768, 1188, 1419, 1493, 1647
HapII	CCGG	2 cut(s)	134, 308
HhaI	GCGC	3 cut(s)	133, 1204, 1240
Hin6I	GCGC	3 cut(s)	131, 1202, 1238
HinP1I	GCGC	3 cut(s)	131, 1202, 1238
HincII	GTYRAC	2 cut(s)	1020, 1030
HindII	GTYRAC	2 cut(s)	1020, 1030
HinfI	GANTC	4 cut(s)	56, 256, 659, 1162
HpaII	CCGG	2 cut(s)	134, 308
Hpy166II	GTNNAC	2 cut(s)	1020, 1030
Hpy188I	TCNGA	9 cut(s)	96, 204, 463, 580, 664, 780, 1695, 1716, 1745
Hpy188III	TCNNGA	9 cut(s)	295, 402, 704, 733, 849, 1172, 1319, 1544, 1672
Hpy8I	GTNNAC	2 cut(s)	1020, 1030
HpyCH4III	ACNGT	4 cut(s)	668, 1104, 1110, 1344
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	2 cut(s)	235, 806
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1201, 1237, 1246, 1468, 1477, 1600, 1609
HpyF3I	CTNAG	7 cut(s)	83, 95, 772, 835, 1014, 1133, 1245
HpySE526I	ACGT	1 cut(s)	922
HspAI	GCGC	3 cut(s)	131, 1202, 1238
Ksp22I	TGATCA	1 cut(s)	199
LguI	GCTCTTC	2 cut(s)	1303, 1623
LmnI	GCTCC	6 cut(s)	643, 735, 1122, 1365, 1467, 1599
LweI	GCATC	3 cut(s)	97, 793, 1146
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	5 cut(s)	635, 889, 1009, 1098, 1104
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	472, 928
MluCI	AATT	9 cut(s)	78, 145, 228, 349, 484, 583, 742, 978, 1707
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	1371
MseI	TTAA	4 cut(s)	741, 762, 864, 1677
MslI	CAYNNNNRTG	3 cut(s)	1290, 1413, 1515
MspA1I	CMGCKG	1 cut(s)	1625
MspI	CCGG	2 cut(s)	134, 308
MspR9I	CCNGG	2 cut(s)	308, 309
MwoI	GCNNNNNNNGC	7 cut(s)	1201, 1237, 1246, 1468, 1477, 1600, 1609
NciI	CCSGG	2 cut(s)	308, 309
NcoI	CCATGG	3 cut(s)	1291, 1414, 1516
NmeAIII	GCCGAG	3 cut(s)	369, 1084, 1680
NmuCI	GTSAC	3 cut(s)	635, 889, 1098
NspI	RCATGY	2 cut(s)	1058, 1607
NspV	TTCGAA	2 cut(s)	142, 259
PaeI	GCATGC	1 cut(s)	1058
PciSI	GCTCTTC	2 cut(s)	1303, 1623
PdmI	GAANNNNTTC	1 cut(s)	1371
PfeI	GAWTC	3 cut(s)	256, 659, 1162
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspPI	GGNCC	6 cut(s)	389, 1187, 1418, 1492, 1520, 1646
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	695, 1214
RsaNI	GTAC	2 cut(s)	694, 1213
RseI	CAYNNNNRTG	3 cut(s)	1290, 1413, 1515
SapI	GCTCTTC	2 cut(s)	1303, 1623
SaqAI	TTAA	4 cut(s)	741, 762, 864, 1677
Sau96I	GGNCC	6 cut(s)	389, 1187, 1418, 1492, 1520, 1646
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	308, 309
SduI	GDGCHC	2 cut(s)	472, 928
SfaNI	GCATC	3 cut(s)	97, 793, 1146
SfuI	TTCGAA	2 cut(s)	142, 259
SinI	GGWCC	2 cut(s)	389, 1520
SmaI	CCCGGG	1 cut(s)	309
SmiMI	CAYNNNNRTG	3 cut(s)	1290, 1413, 1515
SmlI	CTYRAG	5 cut(s)	295, 1049, 1197, 1233, 1670
SmoI	CTYRAG	5 cut(s)	295, 1049, 1197, 1233, 1670
SphI	GCATGC	1 cut(s)	1058
Sse9I	AATT	9 cut(s)	78, 145, 228, 349, 484, 583, 742, 978, 1707
SsiI	CCGC	7 cut(s)	153, 253, 304, 1445, 1455, 1577, 1625
SspI	AATATT	1 cut(s)	1128
StyD4I	CCNGG	2 cut(s)	306, 307
StyI	CCWWGG	3 cut(s)	1291, 1414, 1516
TaaI	ACNGT	4 cut(s)	668, 1104, 1110, 1344
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	8 cut(s)	48, 117, 142, 259, 431, 542, 591, 1728
TasI	AATT	9 cut(s)	78, 145, 228, 349, 484, 583, 742, 978, 1707
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	3 cut(s)	256, 659, 1162
Tru1I	TTAA	4 cut(s)	741, 762, 864, 1677
Tru9I	TTAA	4 cut(s)	741, 762, 864, 1677
TscAI	CASTG	4 cut(s)	620, 730, 1006, 1107
TseFI	GTSAC	3 cut(s)	635, 889, 1098
Tsp45I	GTSAC	3 cut(s)	635, 889, 1098
TspGWI	ACGGA	1 cut(s)	534
TspMI	CCCGGG	1 cut(s)	307
TspRI	CASTG	4 cut(s)	620, 730, 1006, 1107
VpaK11BI	GGWCC	2 cut(s)	389, 1520
XapI	RAATTY	5 cut(s)	78, 145, 228, 978, 1707
XceI	RCATGY	2 cut(s)	1058, 1607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1514
XmaI	CCCGGG	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	1371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.