Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006980

Physical Location & Seq

Genomic Coordinates Forward (+)

44620505 .. 44621368

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG271800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGGTTCCTGCTATATCACTACTACCATTTATGCTCCTGTTAATGCTTCTTGGAACTGCCACCAATTTATGGTGTATGTATCATCATGCACATATTCAGCAGGGTCCTGCAACCCTACCGGCTATTCAGCACTGTCAGTGTCCCCAAGCGCATATTCAACACTGTCCTTTGCCCCAAGCTCGTTTTCAGCATGACCGTTGCCCTTTTACCGAAGAACATAATCAGAAAGAACCTTTGCCTAAAGAATACATGCAGAAAGAACCTTTGCCCGAAGAATACATTCAGAAAGAACTACAAGACCCTTTGCCCCAAGAGCAGGTTCAGCAGGACGCTTTGCCCCAAGACCAGGTTCAGCAAGACCTATTTCCCCAAGACCACGTTCAGCAAGGCCCTTTGCCCCAAGACCACGTTCAGCACTGCACTTCTCCAGAAGGTCATGTTCAGCACGATTGTGGCCCTTTGCCCAAAATTCTTACTCAGCACAGCCCTTCACCCTCTTTGGCCACTTCAACCCCTTCGCCCCTTGCGGCTCCTTCGACCCCTTCAGTCCCTTCTGCTCATGAGGATGGCTCCTTGCCCTCTTCTCCCCAAGCACATGTTCATCCTGATCCTTCACCCTCTAATCCCTCATCCCAGCAAACTCCACTTCATGGTCCTTTGCCCCGAGTGCAAGCAGAACTTGAGAAAATTAAAACTAAAGTTGAGAAATTTAGGACAAAACTTGATTGGAGTAAAATCCGTTATTTGTATCTAGATGAAGATTCGAAGATGCATATAGACTGGACGAAGATTCGACACTTGTATCTAGATGAAGATTCCAAGTATTGGAAGAAAATTCGTCATTTGTATCGAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

287

Amino Acids

32.86

Weight (kDa)

6.06

Isoelectric Point (pI)

73.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13030 AT4G13030 AT4G13030
fragaria_vesca	FvH4_2g18360 FvH4_2g18360 FvH4_2g18361
malus_domestica	MD05G1169200.v1.1 MD10G1157500.v1.1
prunus_persica	Prupe.8G196400_v2.0.a1 Prupe.8G196400_v2.0.a1
pyrus_communis	pycom05g15680 pycom10g13600
rosa_chinensis	RchiOBHm_Chr6g0283741
rosa_laevigata	RLG00000012802
rosa_multiflora	Rmu_sc0001521.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185220
rosa_rugosa	Rorug06G0157400 Rorug06G0157500
rosa_samantha	Rh6AG269400 Rh6AG269500 Rh6BG271700 Rh6CG271700 Rh6CG271800 Rh6DG265500
rosa_wichuraiana	Rw6G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccB7I	CCANNNNNTGG	3 cut(s)	72, 653, 828
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	471, 710, 837
AcuI	CTGAAG	1 cut(s)	531
AfiI	CCNNNNNNNGG	5 cut(s)	72, 319, 349, 653, 828
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	2 cut(s)	161, 513
AjnI	CCWGG	1 cut(s)	348
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AlwI	GGATC	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	3 cut(s)	391, 457, 504
ApoI	RAATTY	3 cut(s)	471, 710, 837
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	4 cut(s)	107, 392, 458, 656
AsuHPI	GGTGA	2 cut(s)	486, 609
AsuII	TTCGAA	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	666
AvaII	GGWCC	2 cut(s)	107, 656
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BalI	TGGCCA	1 cut(s)	506
BccI	CCATC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	350
BfaI	CTAG	2 cut(s)	755, 809
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	107, 656
BmeT110I	CYCGRG	1 cut(s)	666
BmgT120I	GGNCC	4 cut(s)	107, 392, 458, 656
BmiI	GGNNCC	4 cut(s)	9, 108, 534, 574
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	762
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	767
BpuEI	CTTGAG	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 319, 349, 653, 828
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	788
BseBI	CCWGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	574, 604, 632
BseLI	CCNNNNNNNGG	5 cut(s)	72, 319, 349, 653, 828
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	788
BseYI	CCCAGC	1 cut(s)	636
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	3 cut(s)	393, 459, 506
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	129, 536
BslI	CCNNNNNNNGG	5 cut(s)	72, 319, 349, 653, 828
BsmFI	GGGAC	2 cut(s)	129, 536
BsnI	GGCC	3 cut(s)	393, 459, 506
BsoBI	CYCGRG	1 cut(s)	666
Bsp119I	TTCGAA	1 cut(s)	767
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	1 cut(s)	530
BspANI	GGCC	3 cut(s)	393, 459, 506
BspCNI	CTCAG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	4 cut(s)	9, 108, 534, 574
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	605
BspT104I	TTCGAA	1 cut(s)	767
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	788
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	137, 167, 200
Bst6I	CTCTTC	1 cut(s)	589
BstBI	TTCGAA	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	574, 604, 632
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	613
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 325, 670
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	256, 602
BstSCI	CCNGG	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	393, 459, 506
BtsCI	GGATG	3 cut(s)	574, 604, 632
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	4 cut(s)	133, 146, 163, 418
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	675
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	107, 392, 458, 656
CseI	GACGC	1 cut(s)	341
CsiI	ACCWGGT	1 cut(s)	348
CviAII	CATG	7 cut(s)	89, 194, 253, 440, 563, 599, 653
CviJI	RGCY	8 cut(s)	125, 182, 393, 459, 489, 506, 533, 573
CviKI_1	RGCY	8 cut(s)	125, 182, 393, 459, 489, 506, 533, 573
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco47I	GGWCC	2 cut(s)	107, 656
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	666
EcoO109I	RGGNCCY	2 cut(s)	107, 392
EcoRII	CCWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	777
FaeI	CATG	7 cut(s)	92, 197, 256, 443, 566, 602, 656
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	2 cut(s)	129, 536
FatI	CATG	7 cut(s)	88, 193, 252, 439, 562, 598, 652
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	3 cut(s)	581, 591, 619
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	2 cut(s)	755, 809
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	531
GsaI	CCCAGC	1 cut(s)	640
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	393, 459, 506
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	7 cut(s)	92, 197, 256, 443, 566, 602, 656
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	764, 793, 818
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	486, 609
Hpy188I	TCNGA	2 cut(s)	228, 288
Hpy188III	TCNNGA	6 cut(s)	431, 563, 608, 755, 809, 854
HpyAV	CCTTC	7 cut(s)	428, 501, 528, 546, 555, 564, 624
HpyCH4III	ACNGT	3 cut(s)	137, 167, 200
HpyCH4IV	ACGT	2 cut(s)	381, 411
HpyCH4V	TGCA	7 cut(s)	4, 92, 113, 256, 423, 673, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 325, 670
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	2 cut(s)	381, 411
Hsp92II	CATG	7 cut(s)	92, 197, 256, 443, 566, 602, 656
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	3 cut(s)	42, 538, 578
LweI	GCATC	1 cut(s)	762
MabI	ACCWGGT	1 cut(s)	348
MaeI	CTAG	2 cut(s)	755, 809
MaeII	ACGT	2 cut(s)	381, 411
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	8 cut(s)	227, 287, 576, 773, 781, 802, 827, 844
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	5 cut(s)	67, 471, 690, 710, 837
MluNI	TGGCCA	1 cut(s)	506
MnlI	CCTC	5 cut(s)	508, 559, 592, 631, 640
Mox20I	TGGCCA	1 cut(s)	506
Mph1103I	ATGCAT	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	2 cut(s)	44, 693
MslI	CAYNNNNRTG	2 cut(s)	453, 567
Msp20I	TGGCCA	1 cut(s)	506
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	316, 325, 670
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	7 cut(s)	92, 197, 256, 443, 566, 602, 656
NlaIV	GGNNCC	4 cut(s)	9, 108, 534, 574
NsiI	ATGCAT	1 cut(s)	777
NspI	RCATGY	2 cut(s)	256, 602
NspV	TTCGAA	1 cut(s)	767
OliI	CACNNNNGTG	1 cut(s)	453
PagI	TCATGA	1 cut(s)	562
PciI	ACATGT	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	764, 793, 818
PflMI	CCANNNNNTGG	3 cut(s)	72, 653, 828
PkrI	GCNGC	1 cut(s)	532
PpuMI	RGGWCCY	1 cut(s)	107
PscI	ACATGT	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	4 cut(s)	9, 108, 534, 574
PspPI	GGNCC	4 cut(s)	107, 392, 458, 656
PspPPI	RGGWCCY	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	453, 567
SaqAI	TTAA	2 cut(s)	44, 693
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	4 cut(s)	107, 392, 458, 656
ScrFI	CCNGG	1 cut(s)	350
SexAI	ACCWGGT	1 cut(s)	348
SfaNI	GCATC	1 cut(s)	762
SfuI	TTCGAA	1 cut(s)	767
SinI	GGWCC	2 cut(s)	107, 656
SmiMI	CAYNNNNRTG	2 cut(s)	453, 567
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	5 cut(s)	67, 471, 690, 710, 837
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	2 cut(s)	755, 809
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	137, 167, 200
TaiI	ACGT	2 cut(s)	384, 414
TaqI	TCGA	4 cut(s)	539, 767, 796, 853
TasI	AATT	5 cut(s)	67, 471, 690, 710, 837
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	3 cut(s)	764, 793, 818
Tru1I	TTAA	2 cut(s)	44, 693
Tru9I	TTAA	2 cut(s)	44, 693
TscAI	CASTG	4 cut(s)	140, 146, 170, 425
TspDTI	ATGAA	4 cut(s)	593, 641, 774, 828
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	4 cut(s)	140, 146, 170, 425
Van91I	CCANNNNNTGG	3 cut(s)	72, 653, 828
VpaK11BI	GGWCC	2 cut(s)	107, 656
XapI	RAATTY	3 cut(s)	471, 710, 837
XbaI	TCTAGA	2 cut(s)	754, 808
XceI	RCATGY	2 cut(s)	256, 602
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	755, 809
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.