Rorug06G0157500
ERF Family

P-loop containing nucleoside triphosphate hydrolases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006980
Physical Location & Seq
Forward (+)
22549905 .. 22550890
986 bp
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UTR
Exon/CDS
Intron
Rorug06G0157500.1

Sequence Viewer

Length: 285 bp
ATGGGGTTCCGCTTGCCTGGTATTGCTAATGCCAAGAAAAGTCTTACTAGATCTCTATCTACTTCAAAGAGCTTAGATATCCCAAAAGGCTACTTTGCCGTCTATGTTGGGAAGAGCCAGAAAAAGCGATTTGTGATTCCTATATCATACTTGAACAAGCCTCTTTTCCTTGATTTTTTTAGTCAAGCTGAAGAAGAGTTTGGATATGATCATCCAATGGGTGGCATCACAATCCCATGCAGTGAACATACCTTCCTAAATCTCACTTCGCACTTAAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

94

Amino Acids

10.55

Weight (kDa)

9.13

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 18 - 91 1.8e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 221
AflII CTTAAG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 66, 154
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AleI CACNNNNGTG 1 cut(s) 276
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 2 cut(s) 72, 188
AluI AGCT 2 cut(s) 72, 188
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 18
BclI TGATCA 1 cut(s) 208
BfaI CTAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 274
BglII AGATCT 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 221
Bsp143I GATC 2 cut(s) 50, 208
BspACI CCGC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 8
BspQI GCTCTTC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 274
BssMI GATC 2 cut(s) 50, 208
Bst2UI CCWGG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 107, 189
BstAFI CTTAAG 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 53, 211
BstMBI GATC 2 cut(s) 50, 208
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 14
CviAII CATG 1 cut(s) 237
CviJI RGCY 5 cut(s) 72, 90, 117, 160, 188
CviKI_1 RGCY 5 cut(s) 72, 90, 117, 160, 188
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 52, 210
DpnII GATC 2 cut(s) 50, 208
Eam1104I CTCTTC 2 cut(s) 107, 189
EarI CTCTTC 2 cut(s) 107, 189
Eco32I GATATC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 79
FaeI CATG 1 cut(s) 240
FaiI YATR 6 cut(s) 105, 143, 148, 207, 238, 249
FatI CATG 1 cut(s) 236
FbaI TGATCA 1 cut(s) 208
FokI GGATG 1 cut(s) 198
FspBI CTAG 1 cut(s) 48
Hin1II CATG 1 cut(s) 240
HinfI GANTC 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 50, 208
LguI GCTCTTC 1 cut(s) 107
LpnPI CCDG 3 cut(s) 3, 30, 131
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 48
MalI GATC 2 cut(s) 52, 210
MboI GATC 2 cut(s) 50, 208
MboII GAAGA 3 cut(s) 124, 203, 206
MflI RGATCY 1 cut(s) 50
MnlI CCTC 1 cut(s) 171
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
NdeII GATC 2 cut(s) 50, 208
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 275
Sau3AI GATC 2 cut(s) 50, 208
ScrFI CCNGG 1 cut(s) 18
SetI ASST 3 cut(s) 74, 190, 254
SfaNI GCATC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SsiI CCGC 1 cut(s) 10
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 16
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 247
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 221
Vha464I CTTAAG 1 cut(s) 274
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.