Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006980

Physical Location & Seq

Genomic Coordinates Forward (+)

19186406 .. 19189033

Gene Structure 2628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGGTGGCGATGGCAGAGTTACTGGGGAGCAAGAAGAAGACTCCTCACTCAGCGAAGATTCCTCCCAACTCTCATCACAACTTCTAAGAAATCGTGTGAGCATGAATATGGAGGATGCTGCAGTGGATGAACAAACTGGGCCGGGTTTTCAAGAATTTTGCGGAGTGGGAAGTCAAATTTCTTCCGCTTCTTTGGATTTTGAAGCCGATCAGAGGATGGAAAATGTTTATAGGAAGATTTTGCAAAGTTATGATGACTTGCGGATTCGAAGCAAAGATTTGGAAGAAGCCAAGAGCAAAATCTTGAGCTACACCCCCGGTGCGTGGATTGATAGAGTAGGTGCTGTGAAACCGAGGGACTATGATGTGCCAAATACAACAACACTTTTATTGGTTGGTCCAAAAGGATCTGGAAAGAGCAGTCTTGTAAATAGAATCTCGAAGGTGTTTGAAGATGATAAGTTTGCTTCGGAAAGAGCCCAAGTATCATATAATTCATCTATTGGAGACGGAACCTTTTTCCTCCATGAATATATGATACCAAGATGTTCGAGTTCTTTTTGCCTTTATGATACTCGTAGTCTGTCTGATAATTCACCTGAAAACATAAAAATACTGAAGCATTGGATGGAACATGGTGTTCGTCACGGGGAGCTTGTTGTAAGGGATTCAGACAGTCCAAGTTTGAGGAACACAATGATGTACAAAGATCGTGATGATGGTTATCTGTTCAGTGAGATCAAGAACGTTAATTTTGTCATATTTGTTGTTAATGGTCTTTCAGTTCTGAAATCAATGGAAAGCGATGAAGATGCAGAGACGCAATATACTGAAATGATCGCCTCAGCTTTCAAATCTCGATACTTGGCATTTAAAGATGATAAACCCCTTCTTGTTGTTACACATGGTGATTTACTTTCACTTGATGAACGTGCTCGTGTTCGTGTCCATTTGGCAGAACTGCTTGGTATTCCTCCTACAACACAAATTTTTGACATCCCAGAAAGCAGTGATGCGGTAACTCAGTTGACAATAGTTGACATGATACGCTATTCACTTGAGCATGCCGAGAAAAATCTTCCTCGTAAAAGAAAGGTCGAAACTTTGTCGCTGTTATCATGTATGCTCCTGCTACTATTCCTCAGCATTGCCATAATGATCATGTACGCTCCTGCTAATATTCTTCAGCACGGCTACTGCCCTTCGCCTCAAGCGCATATTCAACATTGCCATGTCCCTTCACCGCAAGCACATGTTCACAATAACCCAACACCCCCCTCACCGCCTTCATCCACTTCGCTCCAAGAGCATATCCAGCATGATCCTTCAGCGGAAGAGCGTATCGACAATAGCCCTTTGCCGAGAGTGGAACTTCAGAATATCAGGATCGATTGGAGTAAAATCCGACACTTGTGGTTAGACGACGGGATCGAATGGAGTAAAATCCGACACTTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

487

Amino Acids

54.95

Weight (kDa)

5.36

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13030 AT4G13030 AT4G13030
fragaria_vesca	FvH4_2g18360 FvH4_2g18360 FvH4_2g18361
malus_domestica	MD05G1169200.v1.1 MD10G1157500.v1.1
prunus_persica	Prupe.8G196400_v2.0.a1 Prupe.8G196400_v2.0.a1
pyrus_communis	pycom05g15680 pycom10g13600
rosa_chinensis	RchiOBHm_Chr6g0283741
rosa_laevigata	RLG00000012802
rosa_multiflora	Rmu_sc0001521.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185220
rosa_rugosa	Rorug06G0157400 Rorug06G0157500
rosa_samantha	Rh6AG269400 Rh6AG269500 Rh6BG271700 Rh6CG271700 Rh6CG271800 Rh6DG265500
rosa_wichuraiana	Rw6G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	162, 186, 262, 1016, 1244, 1283, 1331
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	4 cut(s)	415, 1316, 1394, 1436
AcsI	RAATTY	3 cut(s)	155, 177, 987
AcuI	CTGAAG	4 cut(s)	638, 1169, 1311, 1358
AdeI	CACNNNGTG	1 cut(s)	908
AfaI	GTAC	2 cut(s)	704, 1166
AfiI	CCNNNNNNNGG	2 cut(s)	213, 324
AflIII	ACRYGT	1 cut(s)	1252
AgsI	TTSAA	5 cut(s)	152, 203, 452, 853, 1223
AluBI	AGCT	3 cut(s)	309, 655, 848
AluI	AGCT	3 cut(s)	309, 655, 848
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	2 cut(s)	501, 812
AlwI	GGATC	4 cut(s)	415, 1316, 1394, 1436
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	3 cut(s)	155, 177, 987
AspLEI	GCGC	1 cut(s)	1216
AspS9I	GGNCC	2 cut(s)	140, 398
AsuC2I	CCSGG	2 cut(s)	144, 318
AsuHPI	GGTGA	4 cut(s)	588, 920, 1233, 1272
AsuII	TTCGAA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	481
BauI	CACGAG	1 cut(s)	936
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	937
BbvCI	CCTCAGC	2 cut(s)	844, 1142
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	4 cut(s)	5, 211, 622, 713
BceAI	ACGGC	1 cut(s)	1207
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BclI	TGATCA	1 cut(s)	1158
BcnI	CCSGG	2 cut(s)	144, 318
BcoDI	GTCTC	2 cut(s)	501, 812
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	144, 318
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	140, 398
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	144, 318
BmrI	ACTGGG	2 cut(s)	33, 147
BmsI	GCATC	3 cut(s)	106, 802, 1003
BmuI	ACTGGG	2 cut(s)	33, 147
BpiI	GAAGAC	1 cut(s)	45
Bpu10I	CCTNAGC	2 cut(s)	844, 1142
Bpu14I	TTCGAA	1 cut(s)	268
BpuEI	CTTGAG	3 cut(s)	325, 1079, 1194
BpuMI	CCSGG	2 cut(s)	144, 318
Bsa29I	ATCGAT	1 cut(s)	1389
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	2 cut(s)	316, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 324
Bse1I	ACTGG	2 cut(s)	28, 142
Bse3DI	GCAATG	2 cut(s)	1146, 1225
Bse8I	GATNNNNATC	1 cut(s)	723
BseCI	ATCGAT	1 cut(s)	1389
BseDI	CCNNGG	2 cut(s)	316, 353
BseGI	GGATG	6 cut(s)	121, 133, 222, 633, 996, 1289
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	2 cut(s)	213, 324
BseMI	GCAATG	2 cut(s)	1146, 1225
BseMII	CTCAG	4 cut(s)	64, 858, 1037, 1156
BseNI	ACTGG	2 cut(s)	28, 142
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	1389
BsiHKAI	GWGCWC	1 cut(s)	937
BsiSI	CCGG	2 cut(s)	143, 318
BslFI	GGGAC	2 cut(s)	371, 1220
BslI	CCNNNNNNNGG	2 cut(s)	213, 324
BsmAI	GTCTC	2 cut(s)	501, 812
BsmBI	CGTCTC	2 cut(s)	501, 812
BsmFI	GGGAC	2 cut(s)	371, 1220
BsnI	GGCC	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	481, 937
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
BspACI	CCGC	7 cut(s)	162, 186, 262, 1016, 1244, 1283, 1331
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	4 cut(s)	63, 857, 1036, 1155
BspDI	ATCGAT	1 cut(s)	1389
BspLI	GGNNCC	1 cut(s)	514
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	4 cut(s)	415, 1316, 1394, 1436
BspQI	GCTCTTC	1 cut(s)	1329
BspT104I	TTCGAA	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	1146, 1225
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	2 cut(s)	28, 142
BssECI	CCNNGG	2 cut(s)	316, 353
BssMI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
BssSI	CACGAG	1 cut(s)	936
Bst2BI	CACGAG	1 cut(s)	936
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	1329
BstAUI	TGTACA	1 cut(s)	702
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	1065, 1248
BstDEI	CTNAG	5 cut(s)	50, 86, 844, 1023, 1142
BstF5I	GGATG	6 cut(s)	121, 133, 222, 633, 996, 1289
BstHHI	GCGC	1 cut(s)	1216
BstKTI	GATC	9 cut(s)	211, 410, 712, 741, 840, 1161, 1324, 1389, 1431
BstMAI	GTCTC	2 cut(s)	501, 812
BstMBI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
BstMWI	GCNNNNNNNGC	3 cut(s)	1213, 1306, 1315
BstNSI	RCATGY	2 cut(s)	1067, 1256
BstSCI	CCNGG	2 cut(s)	142, 316
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	1389
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	1389
BtgZI	GCGATG	2 cut(s)	24, 819
BtsCI	GGATG	6 cut(s)	121, 133, 222, 633, 996, 1289
BtsI	GCAGTG	2 cut(s)	129, 1015
BtsIMutI	CAGTG	3 cut(s)	129, 739, 1015
Cac8I	GCNNGC	2 cut(s)	1065, 1248
CfoI	GCGC	1 cut(s)	1216
Cfr13I	GGNCC	2 cut(s)	140, 398
ClaI	ATCGAT	1 cut(s)	1389
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	703, 1165
CviJI	RGCY	9 cut(s)	142, 206, 290, 309, 479, 655, 848, 1194, 1353
CviKI_1	RGCY	9 cut(s)	142, 206, 290, 309, 479, 655, 848, 1194, 1353
CviQI	GTAC	2 cut(s)	703, 1165
DdeI	CTNAG	5 cut(s)	50, 86, 844, 1023, 1142
DpnI	GATC	9 cut(s)	210, 409, 711, 740, 839, 1160, 1323, 1388, 1430
DpnII	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
DraI	TTTAAA	1 cut(s)	874
DraIII	CACNNNGTG	1 cut(s)	908
Eam1104I	CTCTTC	1 cut(s)	1329
EarI	CTCTTC	1 cut(s)	1329
Eco24I	GRGCYC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	4 cut(s)	638, 1169, 1311, 1358
EcoT38I	GRGCYC	1 cut(s)	481
Esp3I	CGTCTC	2 cut(s)	501, 812
FaqI	GGGAC	2 cut(s)	371, 1220
FbaI	TGATCA	1 cut(s)	1158
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	6 cut(s)	128, 140, 229, 640, 983, 1276
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	1215
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	2 cut(s)	143, 318
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	1216
Hin6I	GCGC	1 cut(s)	1214
HinP1I	GCGC	1 cut(s)	1214
HincII	GTYRAC	2 cut(s)	1029, 1039
HindII	GTYRAC	2 cut(s)	1029, 1039
HinfI	GANTC	5 cut(s)	41, 59, 265, 435, 668
HpaII	CCGG	2 cut(s)	143, 318
HphI	GGTGA	4 cut(s)	588, 920, 1233, 1272
Hpy166II	GTNNAC	3 cut(s)	1029, 1039, 1258
Hpy188I	TCNGA	8 cut(s)	213, 472, 589, 673, 789, 1377, 1406, 1448
Hpy188III	TCNNGA	8 cut(s)	152, 304, 411, 439, 713, 742, 858, 1384
Hpy8I	GTNNAC	3 cut(s)	1029, 1039, 1258
Hpy99I	CGWCG	1 cut(s)	1427
HpyAV	CCTTC	6 cut(s)	436, 899, 1212, 1248, 1296, 1335
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4IV	ACGT	2 cut(s)	747, 931
HpyCH4V	TGCA	3 cut(s)	122, 244, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1213, 1306, 1315
HpyF3I	CTNAG	5 cut(s)	50, 86, 844, 1023, 1142
HpySE526I	ACGT	2 cut(s)	747, 931
HspAI	GCGC	1 cut(s)	1214
Ksp22I	TGATCA	1 cut(s)	1158
Kzo9I	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
LguI	GCTCTTC	1 cut(s)	1329
LmnI	GCTCC	5 cut(s)	28, 652, 1131, 1174, 1305
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	3 cut(s)	106, 802, 1003
MaeII	ACGT	2 cut(s)	747, 931
MaeIII	GTNAC	4 cut(s)	19, 644, 898, 1018
MalI	GATC	9 cut(s)	210, 409, 711, 740, 839, 1160, 1323, 1388, 1430
MboI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	481, 937
MluCI	AATT	6 cut(s)	155, 177, 493, 592, 751, 987
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	1429
MseI	TTAA	3 cut(s)	750, 771, 873
MslI	CAYNNNNRTG	3 cut(s)	107, 698, 1230
MspA1I	CMGCKG	1 cut(s)	1331
MspI	CCGG	2 cut(s)	143, 318
MspR9I	CCNGG	2 cut(s)	144, 318
MwoI	GCNNNNNNNGC	3 cut(s)	1213, 1306, 1315
NciI	CCSGG	2 cut(s)	144, 318
NdeII	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
NlaIV	GGNNCC	1 cut(s)	514
NmeAIII	GCCGAG	2 cut(s)	1093, 1386
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	2 cut(s)	1067, 1256
NspV	TTCGAA	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	1067
PciI	ACATGT	1 cut(s)	1252
PciSI	GCTCTTC	1 cut(s)	1329
PcsI	WCGNNNNNNNCGW	1 cut(s)	1428
PfeI	GAWTC	4 cut(s)	59, 265, 435, 668
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	1252
Psp1406I	AACGTT	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	2 cut(s)	140, 398
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	2 cut(s)	704, 1166
RsaNI	GTAC	2 cut(s)	703, 1165
RseI	CAYNNNNRTG	3 cut(s)	107, 698, 1230
SapI	GCTCTTC	1 cut(s)	1329
SaqAI	TTAA	3 cut(s)	750, 771, 873
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	9 cut(s)	208, 407, 709, 738, 837, 1158, 1321, 1386, 1428
Sau96I	GGNCC	2 cut(s)	140, 398
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	144, 318
SduI	GDGCHC	2 cut(s)	481, 937
SfaNI	GCATC	3 cut(s)	106, 802, 1003
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	268
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	3 cut(s)	107, 698, 1230
SmlI	CTYRAG	3 cut(s)	304, 1058, 1209
SmoI	CTYRAG	3 cut(s)	304, 1058, 1209
SphI	GCATGC	1 cut(s)	1067
Sse9I	AATT	6 cut(s)	155, 177, 493, 592, 751, 987
SsiI	CCGC	7 cut(s)	162, 186, 262, 1016, 1244, 1283, 1331
SspI	AATATT	1 cut(s)	1180
StyD4I	CCNGG	2 cut(s)	142, 316
TaaI	ACNGT	1 cut(s)	677
TaiI	ACGT	2 cut(s)	750, 934
TaqI	TCGA	8 cut(s)	268, 440, 551, 859, 1098, 1344, 1389, 1431
TasI	AATT	6 cut(s)	155, 177, 493, 592, 751, 987
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	4 cut(s)	59, 265, 435, 668
Tru1I	TTAA	3 cut(s)	750, 771, 873
Tru9I	TTAA	3 cut(s)	750, 771, 873
TscAI	CASTG	3 cut(s)	129, 739, 1015
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	7 cut(s)	119, 144, 486, 543, 822, 942, 1278
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	3 cut(s)	129, 739, 1015
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	3 cut(s)	155, 177, 987
XceI	RCATGY	2 cut(s)	1067, 1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.