FvH4_2g19500

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
16532846 .. 16536954
4109 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19500.t1

Sequence Viewer

Length: 1371 bp
ATGGAGAAAGCTTTGAACAGACAGAAGGTTCTGCTTCAACATCTGAGACCCAATTCTTCTTTGTCTTCCGCAATTCAAACCCATGAGTCTTCTGTCCTCTCTGCTGAAATATGTGCAGCTGGGGATAGTGCTGCTTATCATAGAACTGGTGCTTTTGGAGATGATATAGTGATTGTAGCGGCCTACCGAACTGCCGTTTGCAAAGCAAAGCGAGGCGGTTTTAAGGATACTTTAGCTGATGATTTACTGGCACCTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTTGTTGGCACAGTTCTGGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGCTGGCTTTCCTGATACGGTTCCCATTAGAACTGTCAACAGGCAATGTTCATCTGGCCTTCAGGCAGTTGCTGATGTAGCTGCATTCATAAAGGCTGGGTATTATGACATTGGCATTGCGGCAGGAGTGGAGTGCATGACAATTGATAGCATTGGTAGTATCCATAAAATTAACCCCAAGGCTGAAGCCTTTGCACAAGCCCGCGACTGTCTTCTTCCTATGGGTGTCACTTCTGAAAATGTTGCACAGTGTTATGGTGTAACACGACAGGAGCAAGACCAAGCTGCTGTTGAATCACATAGGCGTGCTGCTGCAGCAACTGCATCTGGTAAATTCAAGGATGAAATTGTCCCTGTTTCTACTAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTACAATTTCTGTGGATGATGGCATCCGGCCAAATGCAAATATGACTGATTTGGCAAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTGAGTGACGGTGCTGGAGCAGTACTCCTGATGAAGAGAAGTGTAGCTATTCAGAAGGGACTTCCTATTATTGGTGTTTTCAGGAGTTTTGCTGCTGTTGGTGTGGATCCCGCTGTCATGGGTGTAGGTCCGGCTGCTGCAATTCCAGTAGCTGTGAAATCTGCTGGTCTTGAGCTTGGTGATATTGATCTATTTGAAATAAATGAGGCGTTTGCATCTCAGTATGTATATTGTCAGAAGAAATTGGAACTTGATTCTGATAAAGTCAATGTTAATGGAGGTGCTATTGCTCTGGGCCATCCCTTAGGCGCTACAGGTGCTCGGTGTGTTGCAACTCTGTTGAATGAGATGAAACGTCGTGGCAAGGATTGTCGTTTTGGTGTAATCTCTATGTGCATAGGCTCAGGTATGGGGGCAGCTGCAGTTTTAGAAAGAGGTGACTCGGTTGATGAGCTATGCAATGCTAGAGCATGCAGTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

457

Amino Acids

47.64

Weight (kDa)

6.67

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 56 - 311 2.8e-75 Thiolase, N-terminal domain
Thiolase_C PF02803 320 - 442 2.8e-48 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009799)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 761
AccII CGCG 1 cut(s) 582
AciI CCGC 6 cut(s) 69, 179, 216, 497, 580, 1002
AclWI GGATC 2 cut(s) 992, 1005
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 2 cut(s) 283, 710
AcuI CTGAAG 2 cut(s) 422, 582
AfaI GTAC 1 cut(s) 915
AfiI CCNNNNNNNGG 2 cut(s) 761, 962
AjnI CCWGG 2 cut(s) 334, 888
Alw21I GWGCWC 1 cut(s) 1213
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 2 cut(s) 992, 1005
AlwNI CAGNNNCTG 3 cut(s) 449, 698, 1043
AoxI GGCC 4 cut(s) 180, 433, 806, 1186
ApoI RAATTY 2 cut(s) 283, 710
AspLEI GCGC 1 cut(s) 1202
AspS9I GGNCC 3 cut(s) 751, 1019, 1186
AsuHPI GGTGA 3 cut(s) 904, 1082, 1340
AsuNHI GCTAGC 1 cut(s) 884
AvaII GGWCC 2 cut(s) 751, 1019
AxyI CCTNAGG 1 cut(s) 1195
BamHI GGATCC 1 cut(s) 997
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 3 cut(s) 57, 81, 581
Bbv12I GWGCWC 1 cut(s) 1213
BccI CCATC 4 cut(s) 358, 791, 854, 1197
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 336, 890
BciVI GTATCC 2 cut(s) 220, 548
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 885, 1356
BfmI CTRYAG 4 cut(s) 690, 873, 1203, 1311
BfoI RGCGCY 1 cut(s) 1203
BfuI GTATCC 2 cut(s) 220, 548
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 2 cut(s) 336, 890
Bme18I GGWCC 2 cut(s) 751, 1019
BmgT120I GGNCC 3 cut(s) 751, 1019, 1186
BmiI GGNNCC 5 cut(s) 252, 333, 399, 753, 999
BmrFI CCNGG 2 cut(s) 336, 890
BmsI GCATC 3 cut(s) 710, 810, 1115
BmtI GCTAGC 1 cut(s) 888
BpiI GAAGAC 3 cut(s) 57, 81, 581
BplI GAGNNNNNCTC 2 cut(s) 900, 932
BpmI CTGGAG 2 cut(s) 783, 927
Bpu10I CCTNAGC 1 cut(s) 1294
BpuEI CTTGAG 1 cut(s) 1082
BsaBI GATNNNNATC 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 962
Bse1I ACTGG 4 cut(s) 151, 252, 766, 1037
Bse21I CCTNAGG 1 cut(s) 1195
Bse3DI GCAATG 3 cut(s) 428, 492, 1357
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 2 cut(s) 336, 890
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 5 cut(s) 369, 724, 799, 801, 1189
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 2 cut(s) 761, 962
BseMI GCAATG 3 cut(s) 428, 492, 1357
BseMII CTCAG 3 cut(s) 35, 1124, 1308
BseNI ACTGG 4 cut(s) 151, 252, 766, 1037
BseRI GAGGAG 1 cut(s) 782
BseYI CCCAGC 2 cut(s) 119, 473
BsgI GTGCAG 2 cut(s) 135, 379
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 4 cut(s) 182, 435, 808, 1188
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 1213
BsiSI CCGG 2 cut(s) 805, 1022
BslFI GGGAC 3 cut(s) 713, 877, 963
BslI CCNNNNNNNGG 2 cut(s) 761, 962
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 713, 877, 963
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 4 cut(s) 182, 435, 808, 1188
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 1213
Bsp143I GATC 2 cut(s) 997, 1078
BspACI CCGC 6 cut(s) 69, 179, 216, 497, 580, 1002
BspANI GGCC 4 cut(s) 182, 435, 808, 1188
BspCNI CTCAG 3 cut(s) 36, 1123, 1307
BspFNI CGCG 1 cut(s) 582
BspLI GGNNCC 5 cut(s) 252, 333, 399, 753, 999
BspMAI CTGCAG 3 cut(s) 694, 877, 1315
BspOI GCTAGC 1 cut(s) 888
BspPI GGATC 2 cut(s) 992, 1005
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 3 cut(s) 428, 492, 1357
BsrI ACTGG 4 cut(s) 151, 252, 766, 1037
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 2 cut(s) 997, 1078
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 336, 890
Bst4CI ACNGT 6 cut(s) 325, 397, 412, 587, 627, 902
Bst6I CTCTTC 1 cut(s) 920
BstAPI GCANNNNNTGC 3 cut(s) 377, 698, 881
BstC8I GCNNGC 6 cut(s) 382, 580, 684, 846, 886, 1363
BstDEI CTNAG 6 cut(s) 44, 344, 741, 1110, 1195, 1294
BstF5I GGATG 5 cut(s) 369, 724, 799, 801, 1189
BstFNI CGCG 1 cut(s) 582
BstH2I RGCGCY 1 cut(s) 1203
BstHHI GCGC 1 cut(s) 1202
BstKTI GATC 2 cut(s) 1000, 1081
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 997, 1078
BstMWI GCNNNNNNNGC 6 cut(s) 377, 455, 692, 698, 881, 1208
BstNI CCWGG 2 cut(s) 336, 890
BstNSI RCATGY 2 cut(s) 779, 1365
BstSCI CCNGG 2 cut(s) 334, 888
BstSFI CTRYAG 4 cut(s) 690, 873, 1203, 1311
BstUI CGCG 1 cut(s) 582
BstV2I GAAGAC 3 cut(s) 57, 81, 581
BstX2I RGATCY 1 cut(s) 997
BstYI RGATCY 1 cut(s) 997
Bsu36I CCTNAGG 1 cut(s) 1195
BsuI GTATCC 2 cut(s) 220, 548
BsuRI GGCC 4 cut(s) 182, 435, 808, 1188
BtsCI GGATG 5 cut(s) 369, 724, 799, 801, 1189
BtsIMutI CAGTG 1 cut(s) 632
Cac8I GCNNGC 6 cut(s) 382, 580, 684, 846, 886, 1363
CaiI CAGNNNCTG 3 cut(s) 449, 698, 1043
CfoI GCGC 1 cut(s) 1202
Cfr13I GGNCC 3 cut(s) 751, 1019, 1186
Csp6I GTAC 1 cut(s) 914
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 5 cut(s) 83, 514, 776, 1009, 1362
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 6 cut(s) 44, 344, 741, 1110, 1195, 1294
DpnI GATC 2 cut(s) 999, 1080
DpnII GATC 2 cut(s) 997, 1078
DraI TTTAAA 1 cut(s) 853
EaeI YGGCCR 1 cut(s) 806
Eam1104I CTCTTC 1 cut(s) 920
EarI CTCTTC 1 cut(s) 920
Eco130I CCWWGG 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 751, 1019
Eco57I CTGAAG 2 cut(s) 422, 582
Eco81I CCTNAGG 1 cut(s) 1195
EcoRII CCWGG 2 cut(s) 334, 888
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 5 cut(s) 86, 517, 779, 1012, 1365
FaqI GGGAC 3 cut(s) 713, 877, 963
FatI CATG 5 cut(s) 82, 513, 775, 1008, 1361
FauI CCCGC 2 cut(s) 587, 1009
FokI GGATG 5 cut(s) 376, 731, 788, 806, 1176
FspBI CTAG 2 cut(s) 885, 1356
GlaI GCGC 1 cut(s) 1201
GsaI CCCAGC 2 cut(s) 123, 477
GsuI CTGGAG 2 cut(s) 783, 927
HaeII RGCGCY 1 cut(s) 1203
HaeIII GGCC 4 cut(s) 182, 435, 808, 1188
HapII CCGG 2 cut(s) 805, 1022
HhaI GCGC 1 cut(s) 1202
Hin1II CATG 5 cut(s) 86, 517, 779, 1012, 1365
Hin6I GCGC 1 cut(s) 1200
HinP1I GCGC 1 cut(s) 1200
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 4 cut(s) 86, 671, 1145, 1331
HpaII CCGG 2 cut(s) 805, 1022
HphI GGTGA 3 cut(s) 904, 1082, 1340
Hpy166II GTNNAC 2 cut(s) 415, 751
Hpy188I TCNGA 6 cut(s) 45, 613, 859, 945, 1128, 1150
Hpy188III TCNNGA 4 cut(s) 389, 919, 973, 1061
Hpy8I GTNNAC 2 cut(s) 415, 751
Hpy99I CGWCG 1 cut(s) 1251
HpyAV CCTTC 4 cut(s) 19, 256, 446, 940
HpyCH4III ACNGT 6 cut(s) 325, 397, 412, 587, 627, 902
HpyCH4IV ACGT 1 cut(s) 1246
HpyF10VI GCNNNNNNNGC 6 cut(s) 377, 455, 692, 698, 881, 1208
HpyF3I CTNAG 6 cut(s) 44, 344, 741, 1110, 1195, 1294
HpySE526I ACGT 1 cut(s) 1246
Hsp92II CATG 5 cut(s) 86, 517, 779, 1012, 1365
HspAI GCGC 1 cut(s) 1200
Kzo9I GATC 2 cut(s) 997, 1078
LmnI GCTCC 3 cut(s) 337, 649, 908
LweI GCATC 3 cut(s) 710, 810, 1115
MaeI CTAG 2 cut(s) 885, 1356
MaeII ACGT 1 cut(s) 1246
MaeIII GTNAC 5 cut(s) 604, 637, 778, 896, 1328
MalI GATC 2 cut(s) 999, 1080
MboI GATC 2 cut(s) 997, 1078
MboII GAAGA 7 cut(s) 48, 57, 81, 581, 584, 937, 1141
MfeI CAATTG 2 cut(s) 351, 519
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 1 cut(s) 1213
MlyI GAGTC 2 cut(s) 95, 1325
MnlI CCTC 7 cut(s) 107, 206, 760, 765, 1090, 1163, 1319
MseI TTAA 4 cut(s) 222, 549, 852, 1164
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 3 cut(s) 119, 1004, 1310
MspI CCGG 2 cut(s) 805, 1022
MspR9I CCNGG 2 cut(s) 336, 890
MunI CAATTG 2 cut(s) 351, 519
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 2 cut(s) 336, 890
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 6 cut(s) 377, 455, 692, 698, 881, 1208
NdeII GATC 2 cut(s) 997, 1078
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 5 cut(s) 86, 517, 779, 1012, 1365
NlaIV GGNNCC 5 cut(s) 252, 333, 399, 753, 999
NmuCI GTSAC 3 cut(s) 604, 896, 1328
NspI RCATGY 2 cut(s) 779, 1365
PaeI GCATGC 1 cut(s) 1365
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 671, 1145
PflMI CCANNNNNTGG 1 cut(s) 761
PleI GAGTC 2 cut(s) 94, 1325
PpsI GAGTC 2 cut(s) 94, 1325
Psp6I CCWGG 2 cut(s) 334, 888
PspFI CCCAGC 2 cut(s) 119, 473
PspGI CCWGG 2 cut(s) 334, 888
PspN4I GGNNCC 5 cut(s) 252, 333, 399, 753, 999
PspPI GGNCC 3 cut(s) 751, 1019, 1186
PstI CTGCAG 3 cut(s) 694, 877, 1315
PstNI CAGNNNCTG 3 cut(s) 449, 698, 1043
PsuI RGATCY 1 cut(s) 997
PvuII CAGCTG 2 cut(s) 119, 1310
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 4 cut(s) 222, 549, 852, 1164
Sau3AI GATC 2 cut(s) 997, 1078
Sau96I GGNCC 3 cut(s) 751, 1019, 1186
ScaI AGTACT 1 cut(s) 915
SchI GAGTC 2 cut(s) 95, 1325
ScrFI CCNGG 2 cut(s) 336, 890
SduI GDGCHC 1 cut(s) 1213
SfaNI GCATC 3 cut(s) 710, 810, 1115
SfcI CTRYAG 4 cut(s) 690, 873, 1203, 1311
SinI GGWCC 2 cut(s) 751, 1019
SmiI ATTTAAAT 1 cut(s) 853
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
SphI GCATGC 1 cut(s) 1365
SsiI CCGC 6 cut(s) 69, 179, 216, 497, 580, 1002
SspMI CTAG 2 cut(s) 885, 1356
StyD4I CCNGG 2 cut(s) 334, 888
StyI CCWWGG 1 cut(s) 555
SwaI ATTTAAAT 1 cut(s) 853
TaaI ACNGT 6 cut(s) 325, 397, 412, 587, 627, 902
TaiI ACGT 1 cut(s) 1249
TatI WGTACW 1 cut(s) 913
TauI GCSGC 2 cut(s) 182, 500
TfiI GAWTC 2 cut(s) 671, 1145
Tru1I TTAA 4 cut(s) 222, 549, 852, 1164
Tru9I TTAA 4 cut(s) 222, 549, 852, 1164
TscAI CASTG 1 cut(s) 632
TseFI GTSAC 3 cut(s) 604, 896, 1328
Tsp45I GTSAC 3 cut(s) 604, 896, 1328
TspDTI ATGAA 5 cut(s) 417, 454, 735, 938, 1256
TspRI CASTG 1 cut(s) 632
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 751, 1019
XapI RAATTY 2 cut(s) 283, 710
XceI RCATGY 2 cut(s) 779, 1365
XspI CTAG 2 cut(s) 885, 1356
ZrmI AGTACT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.