Rw0G000370

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00009
Physical Location & Seq
Forward (+)
21019 .. 25243
4225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000370.1

Sequence Viewer

Length: 1314 bp
ATGGAGAAAGCTCTTAACAGACAGAGGTTCTCTGGGGATAGTGCTGCTTATCATAGAACAGCTGCTTTTGGAGATGATATAGTGATTGTAGCGGCCTACCGAACTGCCATTTGCAAAGCAAAGCGAGGCGGCTTTAAGGATACTTTAGCTGATGATTTACTGGCACCTGTTTTGAAGGCAGTTATAGAGAGGACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTTGTTGGCACAGTTCTGGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGCTGGTTTTCCTGTCAGAAGCTTATGGTTCATTTGTTCTATCCAGATACGGTTCCCATCAACCGTCAACAGACAATGTTCATCTGGCCTTCAGGCAGTTGCTGATGTAGCTGCATTCATAAAGGCAGGGTATTATGACATTGGCATTGCAGCAGGAGTGGAGTGCATGACAGTTGATAGCATTGGTAGTGTCCGTAGACTTAACCCCAAGGCTGAAGCCTTTGCACAAGCCCGTGACTGTCTTCTTCCTATGGGTGTTACTTCTGAAAATGTTGCACAGCGTTATGGTGTAACACGACAGGAGCAAGACCAAGCTGCTGTTGAATCACATAGGCGTGCTACTGCAGCAACTGCATCTGGTAAATTCAAAGACGAAATTGTCCCTGTATCTACTAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCGTGTTACAATTTCTGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAACTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTGAGTGATGGCGCTGGAGCAGTACTCCTGATGAAGAGAAGTGTAGCTATTCAGAAGGGACTTCCTATTATTGGTGTTTTCAGGAGTTTTGCTGCTGTTGGTGTGGATCCCGCTGTCATGGGCATAGGTCCAGCTGCTGCAATTCCAGTAGCCGTGAAATCTGCTGGTCTTGAGCTTGGCGATATTGATCTATTTGAAATAAATGAGGCATTTGCATCTCAGTATGTATACTGTCAGAAGAAATTGGAACTTGATTCTGAAAAAGTCAACGTCAATGGAGGTGCTATTGCTCTGGGTCATCCCTTAGGTGCTACAGGTGCTCGGTGTGTTGCAACCCTATTGAATGAGATGAAACGCCGTGGCAAGGATTGTCGTTTTGGTGTAATCTCCATGTGCATAGGCTCGGGTATGGGGGCGGCTGCAGTTTTGGAAAGAGGTGACTCGGTTGATGAGCTATGCAATGCTAGAACATGCAGTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

46.12

Weight (kDa)

8.53

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 27 - 292 2.8e-70 Thiolase, N-terminal domain
Thiolase_C PF02803 301 - 423 1.2e-48 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009799)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 704
AccI GTMKAC 2 cut(s) 487, 1062
AciI CCGC 4 cut(s) 92, 129, 945, 1250
AclWI GGATC 2 cut(s) 935, 948
AcoI YGGCCR 1 cut(s) 749
AcsI RAATTY 2 cut(s) 196, 653
AcuI CTGAAG 3 cut(s) 365, 525, 803
AfaI GTAC 1 cut(s) 858
AfiI CCNNNNNNNGG 3 cut(s) 704, 905, 1198
AgsI TTSAA 6 cut(s) 175, 202, 614, 658, 1031, 1177
AjnI CCWGG 2 cut(s) 247, 831
Alw21I GWGCWC 1 cut(s) 1156
AlwI GGATC 2 cut(s) 935, 948
AlwNI CAGNNNCTG 3 cut(s) 392, 641, 971
Ama87I CYCGRG 1 cut(s) 1237
AoxI GGCC 3 cut(s) 93, 376, 749
ApoI RAATTY 2 cut(s) 196, 653
AspLEI GCGC 1 cut(s) 848
AspS9I GGNCC 2 cut(s) 694, 962
AsuHPI GGTGA 2 cut(s) 847, 1283
AsuNHI GCTAGC 1 cut(s) 827
AvaI CYCGRG 1 cut(s) 1237
AvaII GGWCC 2 cut(s) 694, 962
AxyI CCTNAGG 1 cut(s) 1138
BamHI GGATCC 1 cut(s) 940
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 1156
BccI CCATC 5 cut(s) 271, 355, 734, 797, 836
BceAI ACGGC 2 cut(s) 971, 1176
BciT130I CCWGG 2 cut(s) 249, 833
BciVI GTATCC 1 cut(s) 133
BfaI CTAG 2 cut(s) 828, 1299
BfmI CTRYAG 4 cut(s) 633, 816, 1146, 1254
BfoI RGCGCY 1 cut(s) 849
BfuI GTATCC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 858
Bme1390I CCNGG 2 cut(s) 249, 833
Bme18I GGWCC 2 cut(s) 694, 962
BmeT110I CYCGRG 1 cut(s) 1237
BmgT120I GGNCC 2 cut(s) 694, 962
BmiI GGNNCC 5 cut(s) 165, 246, 344, 696, 942
BmrFI CCNGG 2 cut(s) 249, 833
BmsI GCATC 3 cut(s) 653, 753, 1058
BmtI GCTAGC 1 cut(s) 831
BpiI GAAGAC 1 cut(s) 524
BplI GAGNNNNNCTC 2 cut(s) 843, 875
BpmI CTGGAG 2 cut(s) 726, 870
BpuEI CTTGAG 1 cut(s) 1025
BsaBI GATNNNNATC 1 cut(s) 1020
BsaJI CCNNGG 2 cut(s) 498, 1192
Bsc4I CCNNNNNNNGG 3 cut(s) 704, 905, 1198
Bse1I ACTGG 3 cut(s) 165, 709, 980
Bse21I CCTNAGG 1 cut(s) 1138
Bse3DI GCAATG 2 cut(s) 435, 1300
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 2 cut(s) 249, 833
BseDI CCNNGG 2 cut(s) 498, 1192
BseGI GGATG 4 cut(s) 282, 742, 744, 1132
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 3 cut(s) 704, 905, 1198
BseMI GCAATG 2 cut(s) 435, 1300
BseMII CTCAG 1 cut(s) 1067
BseNI ACTGG 3 cut(s) 165, 709, 980
BseRI GAGGAG 1 cut(s) 725
BsgI GTGCAG 1 cut(s) 292
BshFI GGCC 3 cut(s) 95, 378, 751
BshNI GGYRCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 1156
BsiHKCI CYCGRG 1 cut(s) 1237
BsiSI CCGG 1 cut(s) 748
BslFI GGGAC 3 cut(s) 656, 820, 906
BslI CCNNNNNNNGG 3 cut(s) 704, 905, 1198
BsmFI GGGAC 3 cut(s) 656, 820, 906
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 3 cut(s) 95, 378, 751
BsoBI CYCGRG 1 cut(s) 1237
Bsp1286I GDGCHC 1 cut(s) 1156
Bsp143I GATC 2 cut(s) 940, 1021
BspACI CCGC 4 cut(s) 92, 129, 945, 1250
BspANI GGCC 3 cut(s) 95, 378, 751
BspCNI CTCAG 1 cut(s) 1066
BspLI GGNNCC 5 cut(s) 165, 246, 344, 696, 942
BspMAI CTGCAG 3 cut(s) 637, 820, 1258
BspOI GCTAGC 1 cut(s) 831
BspPI GGATC 2 cut(s) 935, 948
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 435, 1300
BsrI ACTGG 3 cut(s) 165, 709, 980
BssECI CCNNGG 2 cut(s) 498, 1192
BssMI GATC 2 cut(s) 940, 1021
BssNAI GTATAC 1 cut(s) 1063
BssT1I CCWWGG 1 cut(s) 498
Bst1107I GTATAC 1 cut(s) 1063
Bst2UI CCWGG 2 cut(s) 249, 833
Bst4CI ACNGT 6 cut(s) 238, 342, 355, 463, 530, 1067
Bst6I CTCTTC 1 cut(s) 863
BstAPI GCANNNNNTGC 3 cut(s) 290, 641, 824
BstC8I GCNNGC 3 cut(s) 627, 789, 829
BstDEI CTNAG 4 cut(s) 257, 684, 1053, 1138
BstDSI CCRYGG 1 cut(s) 1192
BstF5I GGATG 4 cut(s) 282, 742, 744, 1132
BstH2I RGCGCY 1 cut(s) 849
BstHHI GCGC 1 cut(s) 848
BstKTI GATC 2 cut(s) 943, 1024
BstMBI GATC 2 cut(s) 940, 1021
BstMWI GCNNNNNNNGC 6 cut(s) 290, 398, 635, 641, 824, 1151
BstNI CCWGG 2 cut(s) 249, 833
BstNSI RCATGY 1 cut(s) 1308
BstSCI CCNGG 2 cut(s) 247, 831
BstSFI CTRYAG 4 cut(s) 633, 816, 1146, 1254
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 940
BstYI RGATCY 1 cut(s) 940
BstZ17I GTATAC 1 cut(s) 1063
Bsu36I CCTNAGG 1 cut(s) 1138
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 95, 378, 751
BtgI CCRYGG 1 cut(s) 1192
BtsCI GGATG 4 cut(s) 282, 742, 744, 1132
Cac8I GCNNGC 3 cut(s) 627, 789, 829
CaiI CAGNNNCTG 3 cut(s) 392, 641, 971
CfoI GCGC 1 cut(s) 848
Cfr13I GGNCC 2 cut(s) 694, 962
Csp6I GTAC 1 cut(s) 857
CspCI CAANNNNNGTGG 2 cut(s) 714, 749
CviAII CATG 5 cut(s) 457, 763, 952, 1225, 1305
CviQI GTAC 1 cut(s) 857
DdeI CTNAG 4 cut(s) 257, 684, 1053, 1138
DpnI GATC 2 cut(s) 942, 1023
DpnII GATC 2 cut(s) 940, 1021
DraI TTTAAA 1 cut(s) 796
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 749
Eam1104I CTCTTC 1 cut(s) 863
EarI CTCTTC 1 cut(s) 863
Eco130I CCWWGG 1 cut(s) 498
Eco47I GGWCC 2 cut(s) 694, 962
Eco57I CTGAAG 3 cut(s) 365, 525, 803
Eco81I CCTNAGG 1 cut(s) 1138
Eco88I CYCGRG 1 cut(s) 1237
EcoRII CCWGG 2 cut(s) 247, 831
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 5 cut(s) 460, 766, 955, 1228, 1308
FaqI GGGAC 3 cut(s) 656, 820, 906
FatI CATG 5 cut(s) 456, 762, 951, 1224, 1304
FauI CCCGC 1 cut(s) 952
FblI GTMKAC 2 cut(s) 487, 1062
FokI GGATG 4 cut(s) 289, 731, 749, 1119
FspBI CTAG 2 cut(s) 828, 1299
GlaI GCGC 1 cut(s) 847
GsuI CTGGAG 2 cut(s) 726, 870
HaeII RGCGCY 1 cut(s) 849
HaeIII GGCC 3 cut(s) 95, 378, 751
HapII CCGG 1 cut(s) 748
HhaI GCGC 1 cut(s) 848
Hin1II CATG 5 cut(s) 460, 766, 955, 1228, 1308
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HincII GTYRAC 2 cut(s) 358, 1102
HindII GTYRAC 2 cut(s) 358, 1102
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 3 cut(s) 614, 1088, 1274
HpaII CCGG 1 cut(s) 748
HphI GGTGA 2 cut(s) 847, 1283
Hpy166II GTNNAC 5 cut(s) 358, 488, 694, 1063, 1102
Hpy188I TCNGA 6 cut(s) 308, 556, 802, 888, 1071, 1093
Hpy188III TCNNGA 4 cut(s) 334, 862, 916, 1004
Hpy8I GTNNAC 5 cut(s) 358, 488, 694, 1063, 1102
HpyAV CCTTC 3 cut(s) 169, 389, 883
HpyCH4III ACNGT 6 cut(s) 238, 342, 355, 463, 530, 1067
HpyCH4IV ACGT 1 cut(s) 1104
HpyF10VI GCNNNNNNNGC 6 cut(s) 290, 398, 635, 641, 824, 1151
HpyF3I CTNAG 4 cut(s) 257, 684, 1053, 1138
HpySE526I ACGT 1 cut(s) 1104
Hsp92II CATG 5 cut(s) 460, 766, 955, 1228, 1308
HspAI GCGC 1 cut(s) 846
Kzo9I GATC 2 cut(s) 940, 1021
LmnI GCTCC 3 cut(s) 250, 592, 851
LweI GCATC 3 cut(s) 653, 753, 1058
MaeI CTAG 2 cut(s) 828, 1299
MaeII ACGT 1 cut(s) 1104
MaeIII GTNAC 5 cut(s) 524, 547, 580, 721, 1271
MalI GATC 2 cut(s) 942, 1023
MboI GATC 2 cut(s) 940, 1021
MboII GAAGA 4 cut(s) 524, 527, 880, 1084
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 940
MhlI GDGCHC 1 cut(s) 1156
MluCI AATT 7 cut(s) 196, 264, 653, 666, 726, 975, 1076
MlyI GAGTC 1 cut(s) 1268
MnlI CCTC 8 cut(s) 18, 119, 183, 703, 708, 1033, 1106, 1262
MseI TTAA 4 cut(s) 15, 135, 492, 795
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 3 cut(s) 62, 947, 968
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 2 cut(s) 249, 833
MunI CAATTG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 2 cut(s) 249, 833
MwoI GCNNNNNNNGC 6 cut(s) 290, 398, 635, 641, 824, 1151
NdeII GATC 2 cut(s) 940, 1021
NheI GCTAGC 1 cut(s) 827
NlaIII CATG 5 cut(s) 460, 766, 955, 1228, 1308
NlaIV GGNNCC 5 cut(s) 165, 246, 344, 696, 942
NmuCI GTSAC 2 cut(s) 524, 1271
NspI RCATGY 1 cut(s) 1308
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 614, 1088
PflMI CCANNNNNTGG 1 cut(s) 704
PleI GAGTC 1 cut(s) 1268
PpsI GAGTC 1 cut(s) 1268
Psp6I CCWGG 2 cut(s) 247, 831
PspGI CCWGG 2 cut(s) 247, 831
PspN4I GGNNCC 5 cut(s) 165, 246, 344, 696, 942
PspPI GGNCC 2 cut(s) 694, 962
PstI CTGCAG 3 cut(s) 637, 820, 1258
PstNI CAGNNNCTG 3 cut(s) 392, 641, 971
PsuI RGATCY 1 cut(s) 940
PvuII CAGCTG 2 cut(s) 62, 968
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 4 cut(s) 15, 135, 492, 795
Sau3AI GATC 2 cut(s) 940, 1021
Sau96I GGNCC 2 cut(s) 694, 962
ScaI AGTACT 1 cut(s) 858
SchI GAGTC 1 cut(s) 1268
ScrFI CCNGG 2 cut(s) 249, 833
SduI GDGCHC 1 cut(s) 1156
SfaNI GCATC 3 cut(s) 653, 753, 1058
SfcI CTRYAG 4 cut(s) 633, 816, 1146, 1254
SinI GGWCC 2 cut(s) 694, 962
SmiI ATTTAAAT 1 cut(s) 796
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 7 cut(s) 196, 264, 653, 666, 726, 975, 1076
SsiI CCGC 4 cut(s) 92, 129, 945, 1250
SspMI CTAG 2 cut(s) 828, 1299
StyD4I CCNGG 2 cut(s) 247, 831
StyI CCWWGG 1 cut(s) 498
SwaI ATTTAAAT 1 cut(s) 796
TaaI ACNGT 6 cut(s) 238, 342, 355, 463, 530, 1067
TaiI ACGT 1 cut(s) 1107
TasI AATT 7 cut(s) 196, 264, 653, 666, 726, 975, 1076
TatI WGTACW 1 cut(s) 856
TauI GCSGC 3 cut(s) 95, 132, 1253
TfiI GAWTC 2 cut(s) 614, 1088
Tru1I TTAA 4 cut(s) 15, 135, 492, 795
Tru9I TTAA 4 cut(s) 15, 135, 492, 795
TseFI GTSAC 2 cut(s) 524, 1271
Tsp45I GTSAC 2 cut(s) 524, 1271
TspDTI ATGAA 5 cut(s) 310, 360, 397, 881, 1199
TspGWI ACGGA 1 cut(s) 473
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 2 cut(s) 694, 962
XapI RAATTY 2 cut(s) 196, 653
XceI RCATGY 1 cut(s) 1308
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XmiI GTMKAC 2 cut(s) 487, 1062
XspI CTAG 2 cut(s) 828, 1299
ZrmI AGTACT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.