pycom05g16560

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
19846214 .. 19849196
2983 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16560.13

Sequence Viewer

Length: 1362 bp
ATGGATAAAGCACTTAACAGACAGAAGGTTGTGCTTCAGCATTTGAGACCCAGTTCTTCCGTCTCTTCTCCAGATTATGAATCTGCTGCTCTCTCTGCTTCAACATGTGCAGCTGGGGATAGTGCTGCATACCATAGAACATCTGCTTTTGGAGACGATATTGTGATTGTGGCAGCCTACCGGACTGCCATTTGCAAGGCGAAGCGTGGCGGTTTTAAGGACACTATGCCTGATGATTTACTGGCGCCTGTTTTAAAGGCAGTGATAGAGAGAACAAATTTGAACCCAAATGAGGTGGGGGATATAGTTGTTGGTACAGTTCTGGCACCTGGCTCACTTAGAGCAATTGAATGCAGGATGGCAGCGTTTTACGCTGGCTTTCCAGATACGGTTCCCATTAGAACTGTTAACAGGCAATGTTCATCTGGCCTTCAGGCAGTTGCTGATATAGCTGCTGCTATAAAAGCAGGATATTACGACATTGGCATTGCCGCTGGATTGGAGTCCATGACAGTGGACAACATTAGCGGATTAAGTAAAGTTAACCCTAAAGTGGATATCTTTGCACAAGCACGCGACTGCGTTCTTCCCATGGGTATGACTTCTGAAAATGTTGCCGAGCGATATGGTGTGACTCGGGAGGAACAAGACAGAGCAGCTGTAGAATCACATAGGCGTGCTGCTGCAGCCGCAGCATCCGGTAAATTCAAAGATGAAATTGTCCCTGTATCTACTAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCCTGTTACAATTTCTGTGGATGATGGGATCCGTCCAAATGCAAACATGAACGATTTGGCTAAACTAAAGCCTGCATTCAAACGAGATGGTTCTACAACTGCAGGAAATGCTAGCCAGGTGAGTGACGGTGCTGGAGCAGTCCTCCTTATGAAGAGAAGTTTAGCTATGCAGAAGGGACTTCCTATTCTTGGTGTTTTCAGGAGTTTTGCTGCTGTTGGTGTGGATCCCGCTGTCATGGGAGTTGGTCCAGCTGCTGCAATTCCGGTAGCAGTGAAGTCTGCTGGTCTTGAGCTTGATGATATAGATCTATTTGAGATAAATGAGGCATTTGCATCTCAATATGTATATTGTATCAAGAAATTGGAGCTTGATCCTGAGAAAGTCAATGTTAACGGAGGCGCTCTTGCTCTAGGGCATCCTTTAGGTGCTACAGGTGCTCGCTGTGTTGCAACTCTCCTGAATGAGATGAAGCGCCGTGGCAAGGATAACCGCTTTGGTGTGATCTCCATGTGCATAGGCTCAGGTATGGGGGCTGCTGCAGTTTTTGAAAGAGGGGACTCAGTTGATGAGTTAAGCAATGCTAGAGCTGTCTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

47.49

Weight (kDa)

6.48

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009799)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 325
AccB7I CCANNNNNTGG 1 cut(s) 755
AccII CGCG 1 cut(s) 576
AciI CCGC 6 cut(s) 210, 492, 528, 690, 996, 1258
AclWI GGATC 5 cut(s) 790, 803, 986, 999, 1133
AcsI RAATTY 2 cut(s) 277, 704
AcuI CTGAAG 2 cut(s) 20, 416
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 5 cut(s) 292, 553, 755, 956, 1249
AflIII ACRYGT 1 cut(s) 104
AgsI TTSAA 6 cut(s) 102, 283, 350, 709, 847, 1316
AjnI CCWGG 2 cut(s) 328, 882
AluBI AGCT 8 cut(s) 113, 452, 659, 932, 1019, 1060, 1135, 1355
AluI AGCT 8 cut(s) 113, 452, 659, 932, 1019, 1060, 1135, 1355
Alw21I GWGCWC 1 cut(s) 1207
Alw26I GTCTC 3 cut(s) 40, 67, 147
AlwI GGATC 5 cut(s) 790, 803, 986, 999, 1133
AlwNI CAGNNNCTG 2 cut(s) 443, 1022
Ama87I CYCGRG 1 cut(s) 636
AoxI GGCC 2 cut(s) 427, 767
ApoI RAATTY 2 cut(s) 277, 704
AspLEI GCGC 3 cut(s) 247, 1169, 1242
AspS9I GGNCC 2 cut(s) 745, 1013
AsuHPI GGTGA 1 cut(s) 898
AsuNHI GCTAGC 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 2 cut(s) 745, 1013
BamHI GGATCC 2 cut(s) 795, 991
BanI GGYRCC 2 cut(s) 244, 325
Bbv12I GWGCWC 1 cut(s) 1207
BccI CCATC 3 cut(s) 352, 785, 848
BceAI ACGGC 1 cut(s) 1227
BciT130I CCWGG 2 cut(s) 330, 884
BcoDI GTCTC 3 cut(s) 40, 67, 147
BfaI CTAG 4 cut(s) 879, 1178, 1350, 1360
BfmI CTRYAG 5 cut(s) 660, 684, 867, 1197, 1305
BfoI RGCGCY 3 cut(s) 248, 1170, 1243
BglII AGATCT 1 cut(s) 1072
Bme1390I CCNGG 2 cut(s) 330, 884
Bme18I GGWCC 2 cut(s) 745, 1013
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 2 cut(s) 745, 1013
BmiI GGNNCC 6 cut(s) 246, 327, 393, 747, 797, 993
BmrFI CCNGG 2 cut(s) 330, 884
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 3 cut(s) 704, 1109, 1192
BmtI GCTAGC 1 cut(s) 882
BmuI ACTGGG 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 894, 926
BpmI CTGGAG 3 cut(s) 54, 777, 921
Bpu10I CCTNAGC 1 cut(s) 1288
BpuEI CTTGAG 1 cut(s) 1076
BsaBI GATNNNNATC 1 cut(s) 1071
BsaHI GRCGYC 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 591, 1243
BsaWI WCCGGW 3 cut(s) 180, 698, 1030
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 553, 755, 956, 1249
Bse1I ACTGG 3 cut(s) 51, 246, 760
Bse3DI GCAATG 3 cut(s) 422, 486, 1351
Bse8I GATNNNNATC 1 cut(s) 1071
BseBI CCWGG 2 cut(s) 330, 884
BseDI CCNNGG 2 cut(s) 591, 1243
BseGI GGATG 4 cut(s) 363, 695, 793, 1183
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 5 cut(s) 292, 553, 755, 956, 1249
BseMI GCAATG 3 cut(s) 422, 486, 1351
BseMII CTCAG 3 cut(s) 1134, 1302, 1341
BseNI ACTGG 3 cut(s) 51, 246, 760
BseRI GAGGAG 1 cut(s) 776
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 2 cut(s) 429, 769
BshNI GGYRCC 2 cut(s) 244, 325
BsiHKAI GWGCWC 1 cut(s) 1207
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 3 cut(s) 181, 699, 1031
BslFI GGGAC 3 cut(s) 707, 957, 1337
BslI CCNNNNNNNGG 5 cut(s) 292, 553, 755, 956, 1249
BsmAI GTCTC 3 cut(s) 40, 67, 147
BsmBI CGTCTC 2 cut(s) 67, 147
BsmFI GGGAC 3 cut(s) 707, 957, 1337
BsmI GAATGC 2 cut(s) 356, 842
BsnI GGCC 2 cut(s) 429, 769
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 1207
Bsp143I GATC 5 cut(s) 795, 991, 1072, 1138, 1269
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 6 cut(s) 210, 492, 528, 690, 996, 1258
BspANI GGCC 2 cut(s) 429, 769
BspCNI CTCAG 3 cut(s) 1135, 1301, 1340
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 6 cut(s) 246, 327, 393, 747, 797, 993
BspMAI CTGCAG 3 cut(s) 688, 871, 1309
BspOI GCTAGC 1 cut(s) 882
BspPI GGATC 5 cut(s) 790, 803, 986, 999, 1133
BspT107I GGYRCC 2 cut(s) 244, 325
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 3 cut(s) 422, 486, 1351
BsrI ACTGG 3 cut(s) 51, 246, 760
BssECI CCNNGG 2 cut(s) 591, 1243
BssMI GATC 5 cut(s) 795, 991, 1072, 1138, 1269
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 330, 884
Bst4CI ACNGT 5 cut(s) 319, 391, 406, 514, 896
Bst6I CTCTTC 2 cut(s) 70, 914
BstACI GRCGYC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 6 cut(s) 376, 574, 678, 840, 880, 1207
BstDEI CTNAG 5 cut(s) 338, 735, 1143, 1288, 1327
BstDSI CCRYGG 2 cut(s) 591, 1243
BstF5I GGATG 4 cut(s) 363, 695, 793, 1183
BstFNI CGCG 1 cut(s) 576
BstH2I RGCGCY 3 cut(s) 248, 1170, 1243
BstHHI GCGC 3 cut(s) 247, 1169, 1242
BstKTI GATC 5 cut(s) 798, 994, 1075, 1141, 1272
BstMAI GTCTC 3 cut(s) 40, 67, 147
BstMBI GATC 5 cut(s) 795, 991, 1072, 1138, 1269
BstMWI GCNNNNNNNGC 9 cut(s) 95, 371, 449, 464, 686, 689, 692, 875, 1202
BstNI CCWGG 2 cut(s) 330, 884
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 328, 882
BstSFI CTRYAG 5 cut(s) 660, 684, 867, 1197, 1305
BstUI CGCG 1 cut(s) 576
BstX2I RGATCY 3 cut(s) 795, 991, 1072
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 3 cut(s) 795, 991, 1072
BsuRI GGCC 2 cut(s) 429, 769
BtgI CCRYGG 2 cut(s) 591, 1243
BtsCI GGATG 4 cut(s) 363, 695, 793, 1183
BtsI GCAGTG 2 cut(s) 267, 1044
BtsIMutI CAGTG 3 cut(s) 267, 519, 1044
Cac8I GCNNGC 6 cut(s) 376, 574, 678, 840, 880, 1207
CaiI CAGNNNCTG 2 cut(s) 443, 1022
CfoI GCGC 3 cut(s) 247, 1169, 1242
Cfr13I GGNCC 2 cut(s) 745, 1013
Csp6I GTAC 1 cut(s) 315
CspCI CAANNNNNGTGG 4 cut(s) 276, 311, 765, 800
CviAII CATG 6 cut(s) 105, 508, 592, 814, 1003, 1276
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 5 cut(s) 338, 735, 1143, 1288, 1327
DinI GGCGCC 1 cut(s) 246
DpnI GATC 5 cut(s) 797, 993, 1074, 1140, 1271
DpnII GATC 5 cut(s) 795, 991, 1072, 1138, 1269
DraI TTTAAA 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 70, 914
EarI CTCTTC 2 cut(s) 70, 914
Eco130I CCWWGG 1 cut(s) 591
Eco147I AGGCCT 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 40
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 745, 1013
Eco57I CTGAAG 2 cut(s) 20, 416
Eco88I CYCGRG 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 328, 882
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 591
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 591
Esp3I CGTCTC 2 cut(s) 67, 147
FaeI CATG 6 cut(s) 108, 511, 595, 817, 1006, 1279
FaqI GGGAC 3 cut(s) 707, 957, 1337
FatI CATG 6 cut(s) 104, 507, 591, 813, 1002, 1275
FauI CCCGC 1 cut(s) 1003
FokI GGATG 4 cut(s) 370, 682, 800, 1170
FspBI CTAG 4 cut(s) 879, 1178, 1350, 1360
GlaI GCGC 3 cut(s) 246, 1168, 1241
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 3 cut(s) 54, 777, 921
HaeII RGCGCY 3 cut(s) 248, 1170, 1243
HaeIII GGCC 2 cut(s) 429, 769
HapII CCGG 3 cut(s) 181, 699, 1031
HhaI GCGC 3 cut(s) 247, 1169, 1242
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 6 cut(s) 108, 511, 595, 817, 1006, 1279
Hin6I GCGC 3 cut(s) 245, 1167, 1240
HinP1I GCGC 3 cut(s) 245, 1167, 1240
HincII GTYRAC 3 cut(s) 409, 544, 1159
HindII GTYRAC 3 cut(s) 409, 544, 1159
HinfI GANTC 5 cut(s) 80, 503, 634, 665, 1325
HpaI GTTAAC 3 cut(s) 409, 544, 1159
HpaII CCGG 3 cut(s) 181, 699, 1031
HphI GGTGA 1 cut(s) 898
Hpy166II GTNNAC 5 cut(s) 409, 517, 544, 745, 1159
Hpy188I TCNGA 1 cut(s) 607
Hpy188III TCNNGA 8 cut(s) 71, 383, 638, 967, 1055, 1123, 1142, 1225
Hpy8I GTNNAC 5 cut(s) 409, 517, 544, 745, 1159
HpyAV CCTTC 3 cut(s) 19, 440, 934
HpyCH4III ACNGT 5 cut(s) 319, 391, 406, 514, 896
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 371, 449, 464, 686, 689, 692, 875, 1202
HpyF3I CTNAG 5 cut(s) 338, 735, 1143, 1288, 1327
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 6 cut(s) 108, 511, 595, 817, 1006, 1279
HspAI GCGC 3 cut(s) 245, 1167, 1240
KasI GGCGCC 1 cut(s) 244
KspAI GTTAAC 3 cut(s) 409, 544, 1159
Kzo9I GATC 5 cut(s) 795, 991, 1072, 1138, 1269
LmnI GCTCC 2 cut(s) 902, 1132
LweI GCATC 3 cut(s) 704, 1109, 1192
MaeI CTAG 4 cut(s) 879, 1178, 1350, 1360
MaeIII GTNAC 3 cut(s) 631, 772, 890
MalI GATC 5 cut(s) 797, 993, 1074, 1140, 1271
MboI GATC 5 cut(s) 795, 991, 1072, 1138, 1269
MboII GAAGA 4 cut(s) 48, 57, 578, 931
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 3 cut(s) 795, 991, 1072
MhlI GDGCHC 1 cut(s) 1207
MluCI AATT 7 cut(s) 277, 345, 704, 717, 777, 1026, 1127
Mly113I GGCGCC 1 cut(s) 245
MlyI GAGTC 3 cut(s) 512, 628, 1319
MnlI CCTC 8 cut(s) 286, 634, 754, 759, 920, 1084, 1157, 1313
MseI TTAA 8 cut(s) 15, 216, 254, 408, 533, 543, 1158, 1340
MslI CAYNNNNRTG 3 cut(s) 512, 596, 675
MspA1I CMGCKG 5 cut(s) 113, 494, 659, 998, 1019
MspI CCGG 3 cut(s) 181, 699, 1031
MspR9I CCNGG 2 cut(s) 330, 884
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 2 cut(s) 356, 842
MvaI CCWGG 2 cut(s) 330, 884
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 9 cut(s) 95, 371, 449, 464, 686, 689, 692, 875, 1202
NarI GGCGCC 1 cut(s) 245
NcoI CCATGG 1 cut(s) 591
NdeII GATC 5 cut(s) 795, 991, 1072, 1138, 1269
NheI GCTAGC 1 cut(s) 878
NlaIII CATG 6 cut(s) 108, 511, 595, 817, 1006, 1279
NlaIV GGNNCC 6 cut(s) 246, 327, 393, 747, 797, 993
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 2 cut(s) 631, 890
NspI RCATGY 1 cut(s) 108
PceI AGGCCT 1 cut(s) 769
PciI ACATGT 1 cut(s) 104
PctI GAATGC 2 cut(s) 356, 842
PfeI GAWTC 2 cut(s) 80, 665
PflMI CCANNNNNTGG 1 cut(s) 755
PleI GAGTC 3 cut(s) 511, 628, 1319
PluTI GGCGCC 1 cut(s) 248
PpsI GAGTC 3 cut(s) 511, 628, 1319
PscI ACATGT 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 328, 882
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 2 cut(s) 328, 882
PspN4I GGNNCC 6 cut(s) 246, 327, 393, 747, 797, 993
PspPI GGNCC 2 cut(s) 745, 1013
PstI CTGCAG 3 cut(s) 688, 871, 1309
PstNI CAGNNNCTG 2 cut(s) 443, 1022
PsuI RGATCY 3 cut(s) 795, 991, 1072
PvuII CAGCTG 3 cut(s) 113, 659, 1019
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 3 cut(s) 512, 596, 675
SaqAI TTAA 8 cut(s) 15, 216, 254, 408, 533, 543, 1158, 1340
Sau3AI GATC 5 cut(s) 795, 991, 1072, 1138, 1269
Sau96I GGNCC 2 cut(s) 745, 1013
SchI GAGTC 3 cut(s) 512, 628, 1319
ScrFI CCNGG 2 cut(s) 330, 884
SduI GDGCHC 1 cut(s) 1207
SfaNI GCATC 3 cut(s) 704, 1109, 1192
SfcI CTRYAG 5 cut(s) 660, 684, 867, 1197, 1305
SfoI GGCGCC 1 cut(s) 246
SinI GGWCC 2 cut(s) 745, 1013
SmiMI CAYNNNNRTG 3 cut(s) 512, 596, 675
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
Sse9I AATT 7 cut(s) 277, 345, 704, 717, 777, 1026, 1127
SseBI AGGCCT 1 cut(s) 769
SsiI CCGC 6 cut(s) 210, 492, 528, 690, 996, 1258
SspDI GGCGCC 1 cut(s) 244
SspMI CTAG 4 cut(s) 879, 1178, 1350, 1360
StuI AGGCCT 1 cut(s) 769
StyD4I CCNGG 2 cut(s) 328, 882
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 5 cut(s) 319, 391, 406, 514, 896
TasI AATT 7 cut(s) 277, 345, 704, 717, 777, 1026, 1127
TauI GCSGC 2 cut(s) 494, 692
TfiI GAWTC 2 cut(s) 80, 665
Tru1I TTAA 8 cut(s) 15, 216, 254, 408, 533, 543, 1158, 1340
Tru9I TTAA 8 cut(s) 15, 216, 254, 408, 533, 543, 1158, 1340
TscAI CASTG 3 cut(s) 267, 519, 1044
TseFI GTSAC 2 cut(s) 631, 890
Tsp45I GTSAC 2 cut(s) 631, 890
TspDTI ATGAA 6 cut(s) 93, 411, 729, 830, 932, 1250
TspGWI ACGGA 3 cut(s) 49, 788, 1176
TspRI CASTG 3 cut(s) 267, 519, 1044
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 745, 1013
XapI RAATTY 2 cut(s) 277, 704
XceI RCATGY 1 cut(s) 108
XspI CTAG 4 cut(s) 879, 1178, 1350, 1360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.