MD06G1074100.v1.1

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009799
Physical Location & Seq
Forward (+)
18489174 .. 18494870
5697 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1074100.v1.1.491

Sequence Viewer

Length: 999 bp
ATGGTTTGTCGGTTTTGTCCAGATACAGTTCCCATCAGAACTGTCAACAGGCAATGTTCATCTGGCCTTCAGGCAGTTGCTGATGTAGCTGCTTCTATAAAAGCAGGATATTATGACATCGGCATTGCTGCAGGATTGGAATCCATGACAGTTGATAAACTTGGCAGATCCCGTAAAATTAACCCTAAAGTGGATATCTTTGCACAAGCGCGCAACTGCCTTCTTCCTATGGGTATTACTTCTGAAAATGTTGCACAACGTTATGGTGTGACTCGGGAGGAGCAAGACACAGCTGCTGTTGAATCACATAGGCGTGCTGCTGTAGCCACAGCATCTGGCAAATTCAAAGATGAAATTGTCCCTGTATCAACTAAGATTGTGGACCCAAAAACCGGGGAGGAGAGGCCTGTTACAATTTCTGTGGATGATGGTATCCGACCAAATACAAACATGAACGATTTGGCAAAGCTAAGGCCTGCATTTAAACCAGATGGTTCTACAACTGCAGGAAATGCTAGCCAGGTGAGTGATGGTGCTGGAGCAGTCCTCCTCATGAAAAGAAGTTTAGCTATGCAGAAGGGACTTCCTATTCTTGGTGTTTTCAGGAGTTTTGCTGCGGTTGGTGTGGATCCCACTGTCATGGGAGTAGGTCCAGCTGCTGCAATTCCAGTAGCAGTGAAATCTGCTGGTCTTGAGCTTGATGATATTGATCTGTTTGAGATAAATGAGGCATTTGCATCTCAATATGTTTATTGTTGCAAGAAATTGGAGCTTGATCCTGAAAAAGTCAATGTTAATGGAGGCGCTATTGCTCTAGGCCATCCTTTAGGCGCTACAGGTGCTCGTTGTGTAGCAACTCTCCTGAATGAAATGAAGCGTCGTGGCAGGGATCACCGCTTTGGTGTTATCTCCATGTGCATAGGCTCAGGTATGGGGGCTGCTGCAGTTTTTGAAAGAGGGGATTCAGTTGATGAGCTATGCAACGCTAGAACTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

333

Amino Acids

35.06

Weight (kDa)

8.03

Isoelectric Point (pI)

23.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 7 - 188 4.2e-56 Thiolase, N-terminal domain
Thiolase_C PF02803 196 - 319 2.2e-49 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48880 AT5G48880 AT5G48880 AT5G48880
fragaria_vesca FvH4_2g19500
malus_domestica MD05G1179100.v1.1 MD06G1074100.v1.1 MD10G1167800.v1.1
prunus_persica Prupe.8G206400_v2.0.a1
pyrus_communis pycom05g16560
rosa_chinensis RchiOBHm_Chr6g0285181
rosa_laevigata RLG00000012663
rosa_multiflora Rmu_sc0005710.1_g000006 Rmu_sc0006801.1_g000004
rosa_roxburghii Rroxscaffold_7G00183440
rosa_rugosa Rorug06G0173100
rosa_samantha Rh6AG283100 Rh6CG285800 Rh6DG278800
rosa_wichuraiana Rw0G000370 Rw6G024390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 211
AciI CCGC 2 cut(s) 617, 895
AclI AACGTT 1 cut(s) 259
AclWI GGATC 5 cut(s) 162, 623, 636, 770, 897
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 53
AfiI CCNNNNNNNGG 3 cut(s) 190, 392, 593
AgsI TTSAA 3 cut(s) 302, 346, 953
AjnI CCWGG 1 cut(s) 519
AluBI AGCT 8 cut(s) 89, 293, 469, 569, 656, 697, 772, 976
AluI AGCT 8 cut(s) 89, 293, 469, 569, 656, 697, 772, 976
Alw21I GWGCWC 1 cut(s) 844
AlwI GGATC 5 cut(s) 162, 623, 636, 770, 897
AlwNI CAGNNNCTG 4 cut(s) 80, 296, 335, 659
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 4 cut(s) 64, 404, 473, 817
ApeKI GCWGC 9 cut(s) 89, 128, 293, 317, 614, 656, 659, 938, 941
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 4 cut(s) 211, 213, 806, 833
AspS9I GGNCC 2 cut(s) 382, 650
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 535, 884
AsuNHI GCTAGC 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 2 cut(s) 382, 650
BamHI GGATCC 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 9 cut(s) 76, 115, 280, 304, 601, 643, 646, 925, 928
BccI CCATC 5 cut(s) 41, 422, 485, 524, 828
BciT130I CCWGG 1 cut(s) 521
BciVI GTATCC 1 cut(s) 443
BcnI CCSGG 1 cut(s) 394
BfaI CTAG 3 cut(s) 516, 815, 987
BfmI CTRYAG 5 cut(s) 129, 321, 504, 834, 942
BfoI RGCGCY 2 cut(s) 807, 834
BfuI GTATCC 1 cut(s) 443
BisI GCNGC 9 cut(s) 90, 129, 294, 318, 615, 657, 660, 939, 942
BlsI GCNGC 9 cut(s) 91, 130, 295, 319, 616, 658, 661, 940, 943
Bme1390I CCNGG 2 cut(s) 394, 521
Bme18I GGWCC 2 cut(s) 382, 650
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 382, 650
BmiI GGNNCC 2 cut(s) 384, 630
BmrFI CCNGG 2 cut(s) 394, 521
BmsI GCATC 2 cut(s) 341, 746
BmtI GCTAGC 1 cut(s) 519
BplI GAGNNNNNCTC 2 cut(s) 531, 563
BpmI CTGGAG 1 cut(s) 558
Bpu10I CCTNAGC 2 cut(s) 470, 925
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 1 cut(s) 394
BsaBI GATNNNNATC 2 cut(s) 139, 708
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 392, 593
Bse1I ACTGG 1 cut(s) 668
Bse3DI GCAATG 2 cut(s) 59, 123
Bse8I GATNNNNATC 2 cut(s) 139, 708
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 430, 820
BseJI GATNNNNATC 2 cut(s) 139, 708
BseLI CCNNNNNNNGG 3 cut(s) 190, 392, 593
BseMI GCAATG 2 cut(s) 59, 123
BseMII CTCAG 1 cut(s) 939
BseNI ACTGG 1 cut(s) 668
BsePI GCGCGC 1 cut(s) 209
BseRI GAGGAG 3 cut(s) 293, 413, 539
BseXI GCAGC 9 cut(s) 76, 115, 280, 304, 601, 643, 646, 925, 928
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 66, 406, 475, 819
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 344, 594
BslI CCNNNNNNNGG 3 cut(s) 190, 392, 593
BsmFI GGGAC 2 cut(s) 344, 594
BsnI GGCC 4 cut(s) 66, 406, 475, 819
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 844
Bsp143I GATC 5 cut(s) 167, 628, 709, 775, 889
BspACI CCGC 2 cut(s) 617, 895
BspANI GGCC 4 cut(s) 66, 406, 475, 819
BspCNI CTCAG 1 cut(s) 938
BspFNI CGCG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 384, 630
BspMAI CTGCAG 3 cut(s) 133, 508, 946
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 5 cut(s) 162, 623, 636, 770, 897
BsrDI GCAATG 2 cut(s) 59, 123
BsrI ACTGG 1 cut(s) 668
BssECI CCNNGG 1 cut(s) 393
BssHII GCGCGC 1 cut(s) 209
BssMI GATC 5 cut(s) 167, 628, 709, 775, 889
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 5 cut(s) 28, 43, 151, 637, 994
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 4 cut(s) 211, 315, 477, 517
BstDEI CTNAG 3 cut(s) 372, 470, 925
BstF5I GGATG 2 cut(s) 430, 820
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 2 cut(s) 807, 834
BstHHI GCGC 4 cut(s) 211, 213, 806, 833
BstKTI GATC 5 cut(s) 170, 631, 712, 778, 892
BstMBI GATC 5 cut(s) 167, 628, 709, 775, 889
BstMWI GCNNNNNNNGC 4 cut(s) 86, 323, 512, 839
BstNI CCWGG 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 392, 519
BstSFI CTRYAG 5 cut(s) 129, 321, 504, 834, 942
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 9 cut(s) 76, 115, 280, 304, 601, 643, 646, 925, 928
BstX2I RGATCY 2 cut(s) 167, 628
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 2 cut(s) 167, 628
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 4 cut(s) 66, 406, 475, 819
BtsCI GGATG 2 cut(s) 430, 820
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 2 cut(s) 633, 681
Cac8I GCNNGC 4 cut(s) 211, 315, 477, 517
CaiI CAGNNNCTG 4 cut(s) 80, 296, 335, 659
CciI TCATGA 1 cut(s) 552
CfoI GCGC 4 cut(s) 211, 213, 806, 833
Cfr13I GGNCC 2 cut(s) 382, 650
CseI GACGC 1 cut(s) 866
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 5 cut(s) 145, 451, 553, 640, 913
DdeI CTNAG 3 cut(s) 372, 470, 925
DpnI GATC 5 cut(s) 169, 630, 711, 777, 891
DpnII GATC 5 cut(s) 167, 628, 709, 775, 889
DraI TTTAAA 1 cut(s) 484
Eco147I AGGCCT 2 cut(s) 406, 475
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 382, 650
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 519
EcoRV GATATC 1 cut(s) 196
FaeI CATG 5 cut(s) 148, 454, 556, 643, 916
FaqI GGGAC 2 cut(s) 344, 594
FatI CATG 5 cut(s) 144, 450, 552, 639, 912
Fnu4HI GCNGC 9 cut(s) 90, 129, 294, 318, 615, 657, 660, 939, 942
FokI GGATG 2 cut(s) 437, 807
Fsp4HI GCNGC 9 cut(s) 90, 129, 294, 318, 615, 657, 660, 939, 942
FspBI CTAG 3 cut(s) 516, 815, 987
GlaI GCGC 4 cut(s) 210, 212, 805, 832
GluI GCNGC 9 cut(s) 90, 129, 294, 318, 615, 657, 660, 939, 942
GsuI CTGGAG 1 cut(s) 558
HaeII RGCGCY 2 cut(s) 807, 834
HaeIII GGCC 4 cut(s) 66, 406, 475, 819
HapII CCGG 1 cut(s) 393
HgaI GACGC 1 cut(s) 866
HhaI GCGC 4 cut(s) 211, 213, 806, 833
Hin1II CATG 5 cut(s) 148, 454, 556, 643, 916
Hin6I GCGC 4 cut(s) 209, 211, 804, 831
HinP1I GCGC 4 cut(s) 209, 211, 804, 831
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 4 cut(s) 140, 271, 302, 962
HpaII CCGG 1 cut(s) 393
HphI GGTGA 2 cut(s) 535, 884
Hpy166II GTNNAC 2 cut(s) 46, 382
Hpy188I TCNGA 3 cut(s) 38, 244, 437
Hpy188III TCNNGA 7 cut(s) 20, 275, 553, 604, 692, 779, 862
Hpy8I GTNNAC 2 cut(s) 46, 382
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 3 cut(s) 77, 230, 571
HpyCH4III ACNGT 5 cut(s) 28, 43, 151, 637, 994
HpyCH4IV ACGT 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 323, 512, 839
HpyF3I CTNAG 3 cut(s) 372, 470, 925
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 5 cut(s) 148, 454, 556, 643, 916
HspAI GCGC 4 cut(s) 209, 211, 804, 831
Kzo9I GATC 5 cut(s) 167, 628, 709, 775, 889
LmnI GCTCC 3 cut(s) 280, 539, 769
Lsp1109I GCAGC 9 cut(s) 76, 115, 280, 304, 601, 643, 646, 925, 928
LweI GCATC 2 cut(s) 341, 746
MaeI CTAG 3 cut(s) 516, 815, 987
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 2 cut(s) 268, 409
MalI GATC 5 cut(s) 169, 630, 711, 777, 891
MboI GATC 5 cut(s) 167, 628, 709, 775, 889
MboII GAAGA 1 cut(s) 215
MflI RGATCY 2 cut(s) 167, 628
MhlI GDGCHC 1 cut(s) 844
MluCI AATT 6 cut(s) 177, 341, 354, 414, 663, 764
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 8 cut(s) 271, 391, 396, 557, 560, 721, 794, 950
MseI TTAA 3 cut(s) 180, 483, 795
MslI CAYNNNNRTG 2 cut(s) 312, 638
MspA1I CMGCKG 2 cut(s) 293, 656
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 394, 521
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 4 cut(s) 86, 323, 512, 839
NciI CCSGG 1 cut(s) 394
NdeII GATC 5 cut(s) 167, 628, 709, 775, 889
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 5 cut(s) 148, 454, 556, 643, 916
NlaIV GGNNCC 2 cut(s) 384, 630
NmuCI GTSAC 1 cut(s) 268
PagI TCATGA 1 cut(s) 552
PauI GCGCGC 1 cut(s) 209
PceI AGGCCT 2 cut(s) 406, 475
PfeI GAWTC 3 cut(s) 140, 302, 962
PkrI GCNGC 9 cut(s) 91, 130, 295, 319, 616, 658, 661, 940, 943
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
Psp1406I AACGTT 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 2 cut(s) 384, 630
PspPI GGNCC 2 cut(s) 382, 650
PstI CTGCAG 3 cut(s) 133, 508, 946
PstNI CAGNNNCTG 4 cut(s) 80, 296, 335, 659
PsuI RGATCY 2 cut(s) 167, 628
PteI GCGCGC 1 cut(s) 209
PvuII CAGCTG 2 cut(s) 293, 656
RseI CAYNNNNRTG 2 cut(s) 312, 638
SaqAI TTAA 3 cut(s) 180, 483, 795
SatI GCNGC 9 cut(s) 90, 129, 294, 318, 615, 657, 660, 939, 942
Sau3AI GATC 5 cut(s) 167, 628, 709, 775, 889
Sau96I GGNCC 2 cut(s) 382, 650
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 394, 521
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 2 cut(s) 341, 746
SfcI CTRYAG 5 cut(s) 129, 321, 504, 834, 942
SinI GGWCC 2 cut(s) 382, 650
SmiMI CAYNNNNRTG 2 cut(s) 312, 638
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 6 cut(s) 177, 341, 354, 414, 663, 764
SseBI AGGCCT 2 cut(s) 406, 475
SsiI CCGC 2 cut(s) 617, 895
SspMI CTAG 3 cut(s) 516, 815, 987
StuI AGGCCT 2 cut(s) 406, 475
StyD4I CCNGG 2 cut(s) 392, 519
TaaI ACNGT 5 cut(s) 28, 43, 151, 637, 994
TaiI ACGT 1 cut(s) 262
TasI AATT 6 cut(s) 177, 341, 354, 414, 663, 764
TfiI GAWTC 3 cut(s) 140, 302, 962
Tru1I TTAA 3 cut(s) 180, 483, 795
Tru9I TTAA 3 cut(s) 180, 483, 795
TscAI CASTG 2 cut(s) 640, 681
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 9 cut(s) 89, 128, 293, 317, 614, 656, 659, 938, 941
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 6 cut(s) 48, 366, 467, 569, 882, 887
TspRI CASTG 2 cut(s) 640, 681
VpaK11BI GGWCC 2 cut(s) 382, 650
XapI RAATTY 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XspI CTAG 3 cut(s) 516, 815, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.