Rorug06G0173100

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009799
Physical Location & Seq
Reverse (-)
25548364 .. 25549032
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0173100.1

Sequence Viewer

Length: 669 bp
ATGGATCACATCCTTTTTTGGAATGCTCGTGGAGCTGGGAGTGAGAAGTTCAGGTCCTCAATTCAGGACCTTGTCAAAATGCAGAATGTTGATTTGTTAATTGTGTGCGAGCCTCGTATCCAATTCAAAGGGGTCAAGAAATGTCTTCTGTCACTTGGTTTTACTGATTACAGAGTTATGGAAGCAAGTGGGTTTTCTGGTGGTCTTTGGCTTCTATGGAATAAAAATAAAGTTACTGTTGACTTTGTGGATTCTAATTTTCAGTCTATCTCTGTTAAGGTTACTTGGAATGGGGTGCAGACTTGGTTGCTTTTTGGAATATATGCTAGTCCTTGTAATACGTCTAGAAGCACACTTTGGAATTATCTTGATGACTTGTCCAAGACTATTAATCTCCCCTGGATGATTGTGGGAGACTTTAATGAACTACTCTCTTTCGCTGATAAGATTGGTGGTTCTAAGCACTATAGGTTTGGGGGGATGCAAGATTGGGTTTGCAGGAATGGCCTTATAGACATGGGTTACCGAGTTGCTGATTTCACATGGACAAATAATACAGTAAAAGAAAGGTTAGACAGAAGCTGTGTCCTGATACTAGACATTCGAGGAAAAATCCTCCTTTTAGATTTCAGGCTATGTGGATGCAACATGAAAGCTATACAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

222

Amino Acids

25.48

Weight (kDa)

8.97

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 193 1.6e-08 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48880 AT5G48880 AT5G48880 AT5G48880
fragaria_vesca FvH4_2g19500
malus_domestica MD05G1179100.v1.1 MD06G1074100.v1.1 MD10G1167800.v1.1
prunus_persica Prupe.8G206400_v2.0.a1
pyrus_communis pycom05g16560
rosa_chinensis RchiOBHm_Chr6g0285181
rosa_laevigata RLG00000012663
rosa_multiflora Rmu_sc0005710.1_g000006 Rmu_sc0006801.1_g000004
rosa_roxburghii Rroxscaffold_7G00183440
rosa_rugosa Rorug06G0173100
rosa_samantha Rh6AG283100 Rh6CG285800 Rh6DG278800
rosa_wichuraiana Rw0G000370 Rw6G024390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 398
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AluBI AGCT 3 cut(s) 35, 582, 656
AluI AGCT 3 cut(s) 35, 582, 656
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 1 cut(s) 505
AseI ATTAAT 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 54, 67
AvaII GGWCC 2 cut(s) 54, 67
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 400
BciVI GTATCC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 3 cut(s) 327, 345, 596
BfmI CTRYAG 1 cut(s) 466
BfuI GTATCC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 400
Bme18I GGWCC 2 cut(s) 54, 67
BmgT120I GGNCC 2 cut(s) 54, 67
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 2 cut(s) 471, 632
BpiI GAAGAC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 4 cut(s) 9, 408, 486, 647
BseYI CCCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 1 cut(s) 507
BsmAI GTCTC 1 cut(s) 408
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 1 cut(s) 507
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 507
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 4
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 2 cut(s) 238, 559
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 459
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 4 cut(s) 9, 408, 486, 647
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 32, 504
BstNI CCWGG 1 cut(s) 400
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 137
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 507
BtsCI GGATG 4 cut(s) 9, 408, 486, 647
Cac8I GCNNGC 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 54, 67
CviAII CATG 3 cut(s) 517, 543, 649
CviJI RGCY 7 cut(s) 35, 112, 211, 507, 582, 634, 656
CviKI_1 RGCY 7 cut(s) 35, 112, 211, 507, 582, 634, 656
DdeI CTNAG 1 cut(s) 459
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eco47I GGWCC 2 cut(s) 54, 67
Eco91I GGTNACC 1 cut(s) 521
EcoO109I RGGNCCY 2 cut(s) 54, 67
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 398
FaeI CATG 3 cut(s) 520, 546, 652
FatI CATG 3 cut(s) 516, 542, 648
FokI GGATG 3 cut(s) 415, 493, 654
FspBI CTAG 3 cut(s) 327, 345, 596
GsaI CCCAGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 507
Hin1II CATG 3 cut(s) 520, 546, 652
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 241
Hpy188III TCNNGA 5 cut(s) 65, 136, 345, 368, 589
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4III ACNGT 2 cut(s) 238, 559
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 5 cut(s) 82, 298, 484, 498, 645
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 504
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 3 cut(s) 520, 546, 652
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 9 cut(s) 21, 37, 50, 183, 385, 412, 484, 602, 616
LweI GCATC 2 cut(s) 471, 632
MaeI CTAG 3 cut(s) 327, 345, 596
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 4 cut(s) 150, 232, 280, 521
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 137
MluCI AATT 5 cut(s) 60, 99, 122, 256, 361
MnlI CCTC 4 cut(s) 67, 123, 599, 626
MseI TTAA 4 cut(s) 98, 276, 390, 420
MspR9I CCNGG 1 cut(s) 400
Mva1269I GAATGC 1 cut(s) 28
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 2 cut(s) 32, 504
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 520, 546, 652
NmuCI GTSAC 1 cut(s) 150
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 251
PflFI GACNNNGTC 1 cut(s) 71
PpuMI RGGWCCY 2 cut(s) 54, 67
PshBI ATTAAT 1 cut(s) 390
Psp5II RGGWCCY 2 cut(s) 54, 67
Psp6I CCWGG 1 cut(s) 398
PspEI GGTNACC 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 398
PspPI GGNCC 2 cut(s) 54, 67
PspPPI RGGWCCY 2 cut(s) 54, 67
PstNI CAGNNNCTG 1 cut(s) 582
PsyI GACNNNGTC 1 cut(s) 71
SaqAI TTAA 4 cut(s) 98, 276, 390, 420
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 2 cut(s) 54, 67
ScrFI CCNGG 1 cut(s) 400
SetI ASST 9 cut(s) 37, 56, 72, 282, 344, 473, 572, 584, 658
SfaNI GCATC 2 cut(s) 471, 632
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 2 cut(s) 54, 67
Sse9I AATT 5 cut(s) 60, 99, 122, 256, 361
SspMI CTAG 3 cut(s) 327, 345, 596
StyD4I CCNGG 1 cut(s) 398
TaaI ACNGT 2 cut(s) 238, 559
TaiI ACGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 604
TasI AATT 5 cut(s) 60, 99, 122, 256, 361
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 4 cut(s) 98, 276, 390, 420
Tru9I TTAA 4 cut(s) 98, 276, 390, 420
TseFI GTSAC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 438, 665
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 54, 67
VspI ATTAAT 1 cut(s) 390
XbaI TCTAGA 1 cut(s) 344
XspI CTAG 3 cut(s) 327, 345, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.