MD10G1167800.v1.1

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0009799
Physical Location & Seq
Reverse (-)
25957834 .. 25961569
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1167800.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGCTTGGCAGTAGAGTGTTGATGCTTTGCACGATGATGTTGGGAGGAATGATTGCTTCCGAACCAAATGCCAAAGAGAAAGGAGTCTCATTGGTCGCTCATCTTTTGGTGGTGCGATATGCCCATAAACATCCGGGGAGTTCATTTGGCCATTTTCCCTTTTTGTCGGTGAGGGATTTCTTGAGGCAGTCGAGGATCGTCTTGTTTGATGTTTGGAGGCCTTTTTTTGTATTAACTTTAGCTTATAGTGTTATGGTTCCCATCAGAACAGTCAACAGGCAATGTTCATCAGGCCTTGAGGCAGTTGCTGATGTAGCTGCTTCTATAAAAGCAGGATATTATGATATCATGGACTTGATCTTTATTTTGAATACGGGCATTGCTGCTGGATTGGAGTCCAGGACGGTTGATAAACTTGACAGATTCCGTAAAATTAACCCTAAAGTGGATATCTTTGCACAAGCCCACAACTGCCTTCTTGCTGTGGGCATTACTTCTGAAAATGTTGCCCAACGTTATGGTGTTGAATCACATAGGCATGCTGCTGCAGCTTCCGCATCTGGTAAATTCAAAGATGAAATTGTCCCTGTATCAACTAAGATAAGTATAAAAATGTTCCCCATTGTGTACCCAAATACCGGAGAGGAGAGGCCTGTTACAATTTCTGTGGATAATGGTATCCGACCAAATACAAACATGAACGATTTGGCAAAACTAAAGCCTGCATTTAAACGAGATGGTTCTACAACTGCAGGAAATGCTAGCCAGGTGAGTGATGATGCTGGAGCAGTCCTCCTCATGAAAAGAAGTTTAACTATGCAGAAGGGACTTCCTATTCTTGGTGTTTTCGGGAGTTTTGCTGCCATTGGTGTGGATCCCGCTGTCATGGGAGTAGGTCCAGCTGCTGCAATTCCTGTAGCAGTGAAATCTGCTGGTCTTGAGCTTGATGATATTGATCTGTTTGAGATAAATGAGGCATTTGCATCTCAATATGTTTGTTGTTGCAAGAAATTGGAGCTTGATCCTGAAAAAGTCAATGCTAATGGAGGCGCTATTGCTCTAGGCCATTTAGGCGCTACAGGTGCTCGTTGTGTAGCAACTGTCCTGAATGAAATGAAGCGTCGTGGCAGGGATCACAGCTTTGGTGTTACCTCCATGTGCATAGGCTCAGGTATGGAGGCTGCTGCAGTTTTTGAAAGAGGGGATTCAGTTGATGAGCTATGCAACGCTAGAACTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

414

Amino Acids

44.21

Weight (kDa)

8.51

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 83 - 270 1.8e-32 Thiolase, N-terminal domain
Thiolase_C PF02803 279 - 400 3e-42 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48880 AT5G48880 AT5G48880 AT5G48880
fragaria_vesca FvH4_2g19500
malus_domestica MD05G1179100.v1.1 MD06G1074100.v1.1 MD10G1167800.v1.1
prunus_persica Prupe.8G206400_v2.0.a1
pyrus_communis pycom05g16560
rosa_chinensis RchiOBHm_Chr6g0285181
rosa_laevigata RLG00000012663
rosa_multiflora Rmu_sc0005710.1_g000006 Rmu_sc0006801.1_g000004
rosa_roxburghii Rroxscaffold_7G00183440
rosa_rugosa Rorug06G0173100
rosa_samantha Rh6AG283100 Rh6CG285800 Rh6DG278800
rosa_wichuraiana Rw0G000370 Rw6G024390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 555, 879
AclI AACGTT 1 cut(s) 514
AclWI GGATC 5 cut(s) 203, 869, 882, 1016, 1140
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 566
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 445, 638, 839
AgsI TTSAA 4 cut(s) 370, 527, 571, 1196
AjnI CCWGG 2 cut(s) 398, 765
AluBI AGCT 8 cut(s) 242, 317, 551, 902, 943, 1018, 1140, 1219
AluI AGCT 8 cut(s) 242, 317, 551, 902, 943, 1018, 1140, 1219
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 5 cut(s) 203, 869, 882, 1016, 1140
AlwNI CAGNNNCTG 2 cut(s) 308, 905
AoxI GGCC 5 cut(s) 148, 218, 292, 650, 1063
ApoI RAATTY 1 cut(s) 566
AspLEI GCGC 2 cut(s) 1052, 1076
AspS9I GGNCC 1 cut(s) 896
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 181, 781
AsuNHI GCTAGC 1 cut(s) 761
AvaII GGWCC 1 cut(s) 896
BalI TGGCCA 1 cut(s) 150
BamHI GGATCC 1 cut(s) 874
Bbv12I GWGCWC 1 cut(s) 1087
BccI CCATC 2 cut(s) 269, 731
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 400, 767
BciVI GTATCC 1 cut(s) 689
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 3 cut(s) 762, 1061, 1230
BfmI CTRYAG 5 cut(s) 546, 750, 915, 1077, 1185
BfoI RGCGCY 2 cut(s) 1053, 1077
BfuI GTATCC 1 cut(s) 689
BglI GCCNNNNNGGC 1 cut(s) 1071
Bme1390I CCNGG 3 cut(s) 135, 400, 767
Bme18I GGWCC 1 cut(s) 896
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 2 cut(s) 258, 876
BmrFI CCNGG 3 cut(s) 135, 400, 767
BmsI GCATC 4 cut(s) 12, 566, 769, 992
BmtI GCTAGC 1 cut(s) 765
BplI GAGNNNNNCTC 2 cut(s) 777, 809
BpmI CTGGAG 1 cut(s) 804
Bpu10I CCTNAGC 1 cut(s) 1168
BpuEI CTTGAG 3 cut(s) 202, 317, 959
BpuMI CCSGG 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 954
BsaJI CCNNGG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 638
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 638, 839
Bse3DI GCAATG 2 cut(s) 287, 378
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 2 cut(s) 400, 767
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 3 cut(s) 445, 638, 839
BseMI GCAATG 2 cut(s) 287, 378
BseMII CTCAG 1 cut(s) 1182
BseRI GAGGAG 2 cut(s) 659, 785
BshFI GGCC 5 cut(s) 150, 220, 294, 652, 1065
BsiHKAI GWGCWC 1 cut(s) 1087
BsiSI CCGG 2 cut(s) 134, 639
BslFI GGGAC 2 cut(s) 569, 840
BslI CCNNNNNNNGG 3 cut(s) 445, 638, 839
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 569, 840
BsnI GGCC 5 cut(s) 150, 220, 294, 652, 1065
Bsp1286I GDGCHC 1 cut(s) 1087
Bsp143I GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
BspACI CCGC 2 cut(s) 555, 879
BspANI GGCC 5 cut(s) 150, 220, 294, 652, 1065
BspCNI CTCAG 1 cut(s) 1181
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 258, 876
BspMAI CTGCAG 3 cut(s) 550, 754, 1189
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 5 cut(s) 203, 869, 882, 1016, 1140
BsrDI GCAATG 2 cut(s) 287, 378
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
Bst2UI CCWGG 2 cut(s) 400, 767
Bst4CI ACNGT 4 cut(s) 271, 406, 1102, 1237
BstAPI GCANNNNNTGC 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 540, 723, 763
BstDEI CTNAG 2 cut(s) 597, 1168
BstF5I GGATG 1 cut(s) 130
BstH2I RGCGCY 2 cut(s) 1053, 1077
BstHHI GCGC 2 cut(s) 1052, 1076
BstKTI GATC 6 cut(s) 198, 360, 877, 958, 1024, 1135
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
BstMWI GCNNNNNNNGC 6 cut(s) 314, 548, 554, 758, 1071, 1082
BstNI CCWGG 2 cut(s) 400, 767
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 133, 398, 765
BstSFI CTRYAG 5 cut(s) 546, 750, 915, 1077, 1185
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 2 cut(s) 518, 871
BstYI RGATCY 1 cut(s) 874
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 5 cut(s) 150, 220, 294, 652, 1065
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 3 cut(s) 540, 723, 763
CaiI CAGNNNCTG 2 cut(s) 308, 905
CciI TCATGA 1 cut(s) 798
CfoI GCGC 2 cut(s) 1052, 1076
Cfr13I GGNCC 1 cut(s) 896
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 1 cut(s) 628
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 6 cut(s) 349, 539, 697, 799, 886, 1156
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 2 cut(s) 597, 1168
DpnI GATC 6 cut(s) 197, 359, 876, 957, 1023, 1134
DpnII GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
DraI TTTAAA 1 cut(s) 730
EaeI YGGCCR 1 cut(s) 148
Eco147I AGGCCT 3 cut(s) 220, 294, 652
Eco32I GATATC 2 cut(s) 346, 451
Eco47I GGWCC 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 398, 765
EcoRV GATATC 2 cut(s) 346, 451
FaeI CATG 6 cut(s) 352, 542, 700, 802, 889, 1159
FaqI GGGAC 2 cut(s) 569, 840
FatI CATG 6 cut(s) 348, 538, 696, 798, 885, 1155
FauI CCCGC 1 cut(s) 886
FokI GGATG 1 cut(s) 117
FspBI CTAG 3 cut(s) 762, 1061, 1230
GlaI GCGC 2 cut(s) 1051, 1075
GsuI CTGGAG 1 cut(s) 804
HaeII RGCGCY 2 cut(s) 1053, 1077
HaeIII GGCC 5 cut(s) 150, 220, 294, 652, 1065
HapII CCGG 2 cut(s) 134, 639
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 2 cut(s) 1052, 1076
Hin1II CATG 6 cut(s) 352, 542, 700, 802, 889, 1159
Hin6I GCGC 2 cut(s) 1050, 1074
HinP1I GCGC 2 cut(s) 1050, 1074
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 5 cut(s) 84, 395, 423, 527, 1205
HpaII CCGG 2 cut(s) 134, 639
HphI GGTGA 2 cut(s) 181, 781
Hpy166II GTNNAC 2 cut(s) 274, 628
Hpy188I TCNGA 4 cut(s) 61, 266, 499, 683
Hpy188III TCNNGA 6 cut(s) 181, 799, 850, 938, 1025, 1105
Hpy8I GTNNAC 2 cut(s) 274, 628
Hpy99I CGWCG 1 cut(s) 1125
HpyAV CCTTC 2 cut(s) 485, 817
HpyCH4III ACNGT 4 cut(s) 271, 406, 1102, 1237
HpyCH4IV ACGT 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 548, 554, 758, 1071, 1082
HpyF3I CTNAG 2 cut(s) 597, 1168
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 6 cut(s) 352, 542, 700, 802, 889, 1159
HspAI GCGC 2 cut(s) 1050, 1074
Kzo9I GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
LmnI GCTCC 2 cut(s) 785, 1015
LweI GCATC 4 cut(s) 12, 566, 769, 992
MaeI CTAG 3 cut(s) 762, 1061, 1230
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 2 cut(s) 655, 1147
MalI GATC 6 cut(s) 197, 359, 876, 957, 1023, 1134
MboI GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 1087
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 6 cut(s) 432, 566, 579, 660, 909, 1010
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 2 cut(s) 93, 404
MmeI TCCRAC 1 cut(s) 706
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 4 cut(s) 233, 435, 729, 812
MslI CAYNNNNRTG 3 cut(s) 35, 537, 869
Msp20I TGGCCA 1 cut(s) 150
MspA1I CMGCKG 2 cut(s) 881, 902
MspI CCGG 2 cut(s) 134, 639
MspR9I CCNGG 3 cut(s) 135, 400, 767
MvaI CCWGG 2 cut(s) 400, 767
MwoI GCNNNNNNNGC 6 cut(s) 314, 548, 554, 758, 1071, 1082
NciI CCSGG 1 cut(s) 135
NdeII GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
NheI GCTAGC 1 cut(s) 761
NlaIII CATG 6 cut(s) 352, 542, 700, 802, 889, 1159
NlaIV GGNNCC 2 cut(s) 258, 876
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 3 cut(s) 220, 294, 652
PfeI GAWTC 3 cut(s) 423, 527, 1205
PfoI TCCNGGA 1 cut(s) 398
PleI GAGTC 2 cut(s) 92, 403
PpsI GAGTC 2 cut(s) 92, 403
Psp1406I AACGTT 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 398, 765
PspGI CCWGG 2 cut(s) 398, 765
PspN4I GGNNCC 2 cut(s) 258, 876
PspPI GGNCC 1 cut(s) 896
PstI CTGCAG 3 cut(s) 550, 754, 1189
PstNI CAGNNNCTG 2 cut(s) 308, 905
PsuI RGATCY 1 cut(s) 874
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 3 cut(s) 35, 537, 869
SaqAI TTAA 4 cut(s) 233, 435, 729, 812
Sau3AI GATC 6 cut(s) 195, 357, 874, 955, 1021, 1132
Sau96I GGNCC 1 cut(s) 896
SchI GAGTC 2 cut(s) 93, 404
ScrFI CCNGG 3 cut(s) 135, 400, 767
SduI GDGCHC 1 cut(s) 1087
SfaNI GCATC 4 cut(s) 12, 566, 769, 992
SfcI CTRYAG 5 cut(s) 546, 750, 915, 1077, 1185
SinI GGWCC 1 cut(s) 896
SmiMI CAYNNNNRTG 3 cut(s) 35, 537, 869
SmlI CTYRAG 3 cut(s) 181, 296, 938
SmoI CTYRAG 3 cut(s) 181, 296, 938
SphI GCATGC 1 cut(s) 542
Sse9I AATT 6 cut(s) 432, 566, 579, 660, 909, 1010
SseBI AGGCCT 3 cut(s) 220, 294, 652
SsiI CCGC 2 cut(s) 555, 879
SspMI CTAG 3 cut(s) 762, 1061, 1230
StuI AGGCCT 3 cut(s) 220, 294, 652
StyD4I CCNGG 3 cut(s) 133, 398, 765
TaaI ACNGT 4 cut(s) 271, 406, 1102, 1237
TaiI ACGT 1 cut(s) 517
TaqI TCGA 1 cut(s) 191
TasI AATT 6 cut(s) 432, 566, 579, 660, 909, 1010
TfiI GAWTC 3 cut(s) 423, 527, 1205
Tru1I TTAA 4 cut(s) 233, 435, 729, 812
Tru9I TTAA 4 cut(s) 233, 435, 729, 812
TscAI CASTG 1 cut(s) 927
TspDTI ATGAA 7 cut(s) 132, 276, 591, 713, 815, 1125, 1130
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 1 cut(s) 927
VpaK11BI GGWCC 1 cut(s) 896
XapI RAATTY 1 cut(s) 566
XceI RCATGY 1 cut(s) 542
XspI CTAG 3 cut(s) 762, 1061, 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.