Rmu_sc0006801.1_g000004

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006801.1
OG0009799
Physical Location & Seq
Reverse (-)
20725 .. 26316
5592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006801.1_g000004.1.cds

Sequence Viewer

Length: 1371 bp
atggagaaagctcttaacagacagagggttctgcttcaccacttgagacccaattcttctttgtcttctgcaactcaaacccatgaatcttctgccctctctgcttcaatatgtgcagctggggatagtgctgcttatcatagaacagctgcttttggagatgatatagtgattgtagcggcctaccgaactgccatttgcaaagcaaagcgaggcggctttaaggatactttagctgatgatttactggcacctgttttgaaggcagttatagagagaacaaatttgaacccaagtgaagtaggggatatagttgtcggcacagttctggctcctggctcacttagagcaattgagtgcaggatggcagcattttatgctggttttcctgatacggttcccatcagaaccgtcaacagacaatgttcatctggccttcaggcagttgctgatgtagctgcattcataaaggcagggtattatgacattggcattgcagcaggagtggagtgcatgacagttgatagcattggtagtgtccgtagacttaaccccaaggctgaagcctttgcacaagcccgtgactgtcttcttcctatgggtgttacttctgaaaatgttgcacagcgttatggtgtaacacgacaggagcaagaccaagctgctgttgaatcacataggcgtgctgcagcagcaactgcatctggtaaattcaaagacgaaattgtccctgtatctactaagattgtggacccaaaaactggagaggagaggcgtgttacaatttctgtggatgatggcatccggccaaatgcaaacatgactgatttggcgaaactgaagcctgcatttaaatcagatgggacaacaactgcaggaaatgctagccaggtgagtgatggcgctggagcagtactcctgatgaagagaagtgtagctattcagaagggacttcctattattggtgttttcaggagttttgctgctgttggtgtggatcccgctgtcatgggcataggtccagctgctgcaattccagtagccgtgaaatctgctggtcttgagcttggtgatattgatctatttgaaataaatgaggcgtttgcatctcagtatgtatactgtcagaagaaattggaacttgattccgaaaaagtcaatgttaatggaggtgctattgctttgggtcatcccttgggcgctacaggtgctcggtgtgttgcaactctattgaatgagatgaaacgccgtggcaaggattgtcgttttggtgtaatctccatgtgcataggctcgggtatgggggctgctgcagttttggaaagaggtgacacggttgatgagctatgcaatgctagaacatgcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

456

Amino Acids

47.79

Weight (kDa)

8.2

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48880 AT5G48880 AT5G48880 AT5G48880
fragaria_vesca FvH4_2g19500
malus_domestica MD05G1179100.v1.1 MD06G1074100.v1.1 MD10G1167800.v1.1
prunus_persica Prupe.8G206400_v2.0.a1
pyrus_communis pycom05g16560
rosa_chinensis RchiOBHm_Chr6g0285181
rosa_laevigata RLG00000012663
rosa_multiflora Rmu_sc0005710.1_g000006 Rmu_sc0006801.1_g000004
rosa_roxburghii Rroxscaffold_7G00183440
rosa_rugosa Rorug06G0173100
rosa_samantha Rh6AG283100 Rh6CG285800 Rh6DG278800
rosa_wichuraiana Rw0G000370 Rw6G024390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 2 cut(s) 544, 1119
AciI CCGC 3 cut(s) 179, 216, 1002
AclWI GGATC 2 cut(s) 992, 1005
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 2 cut(s) 283, 710
AcuI CTGAAG 3 cut(s) 422, 582, 860
AfaI GTAC 1 cut(s) 915
AfiI CCNNNNNNNGG 3 cut(s) 761, 962, 1255
AgsI TTSAA 7 cut(s) 108, 262, 289, 671, 715, 1088, 1234
AjnI CCWGG 2 cut(s) 334, 888
Alw21I GWGCWC 1 cut(s) 1213
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 2 cut(s) 992, 1005
AlwNI CAGNNNCTG 3 cut(s) 449, 698, 1028
Ama87I CYCGRG 1 cut(s) 1294
AoxI GGCC 3 cut(s) 180, 433, 806
ApoI RAATTY 2 cut(s) 283, 710
AspLEI GCGC 2 cut(s) 905, 1202
AspS9I GGNCC 2 cut(s) 751, 1019
AsuHPI GGTGA 4 cut(s) 29, 904, 1082, 1340
AsuNHI GCTAGC 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 1294
AvaII GGWCC 2 cut(s) 751, 1019
BamHI GGATCC 1 cut(s) 997
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 57, 581
Bbv12I GWGCWC 1 cut(s) 1213
BccI CCATC 5 cut(s) 358, 410, 791, 854, 893
BceAI ACGGC 2 cut(s) 1028, 1233
BciT130I CCWGG 2 cut(s) 336, 890
BciVI GTATCC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 885, 1356
BfmI CTRYAG 4 cut(s) 687, 873, 1203, 1311
BfoI RGCGCY 2 cut(s) 906, 1203
BfuI GTATCC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 2 cut(s) 336, 890
Bme18I GGWCC 2 cut(s) 751, 1019
BmeT110I CYCGRG 1 cut(s) 1294
BmgT120I GGNCC 2 cut(s) 751, 1019
BmiI GGNNCC 5 cut(s) 252, 333, 399, 753, 999
BmrFI CCNGG 2 cut(s) 336, 890
BmsI GCATC 3 cut(s) 710, 810, 1115
BmtI GCTAGC 1 cut(s) 888
BpiI GAAGAC 2 cut(s) 57, 581
BplI GAGNNNNNCTC 2 cut(s) 900, 932
BpmI CTGGAG 2 cut(s) 783, 927
BpuEI CTTGAG 2 cut(s) 64, 1082
BsaBI GATNNNNATC 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 555, 1194, 1249
Bsc4I CCNNNNNNNGG 3 cut(s) 761, 962, 1255
Bse1I ACTGG 3 cut(s) 252, 766, 1037
Bse3DI GCAATG 2 cut(s) 492, 1357
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 2 cut(s) 336, 890
BseDI CCNNGG 3 cut(s) 555, 1194, 1249
BseGI GGATG 4 cut(s) 369, 799, 801, 1189
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 3 cut(s) 761, 962, 1255
BseMI GCAATG 2 cut(s) 492, 1357
BseMII CTCAG 1 cut(s) 1124
BseNI ACTGG 3 cut(s) 252, 766, 1037
BseRI GAGGAG 1 cut(s) 782
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 2 cut(s) 135, 379
BshFI GGCC 3 cut(s) 182, 435, 808
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 1213
BsiHKCI CYCGRG 1 cut(s) 1294
BsiSI CCGG 1 cut(s) 805
BslFI GGGAC 3 cut(s) 713, 877, 963
BslI CCNNNNNNNGG 3 cut(s) 761, 962, 1255
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 713, 877, 963
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 3 cut(s) 182, 435, 808
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 1294
Bsp1286I GDGCHC 1 cut(s) 1213
Bsp143I GATC 2 cut(s) 997, 1078
BspACI CCGC 3 cut(s) 179, 216, 1002
BspANI GGCC 3 cut(s) 182, 435, 808
BspCNI CTCAG 1 cut(s) 1123
BspLI GGNNCC 5 cut(s) 252, 333, 399, 753, 999
BspMAI CTGCAG 3 cut(s) 691, 877, 1315
BspOI GCTAGC 1 cut(s) 888
BspPI GGATC 2 cut(s) 992, 1005
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 492, 1357
BsrI ACTGG 3 cut(s) 252, 766, 1037
BssECI CCNNGG 3 cut(s) 555, 1194, 1249
BssMI GATC 2 cut(s) 997, 1078
BssNAI GTATAC 1 cut(s) 1120
BssT1I CCWWGG 2 cut(s) 555, 1194
Bst1107I GTATAC 1 cut(s) 1120
Bst2UI CCWGG 2 cut(s) 336, 890
Bst4CI ACNGT 7 cut(s) 325, 397, 412, 520, 587, 1124, 1336
Bst6I CTCTTC 1 cut(s) 920
BstAPI GCANNNNNTGC 3 cut(s) 377, 698, 881
BstC8I GCNNGC 3 cut(s) 684, 846, 886
BstDEI CTNAG 3 cut(s) 344, 741, 1110
BstDSI CCRYGG 1 cut(s) 1249
BstF5I GGATG 4 cut(s) 369, 799, 801, 1189
BstH2I RGCGCY 2 cut(s) 906, 1203
BstHHI GCGC 2 cut(s) 905, 1202
BstKTI GATC 2 cut(s) 1000, 1081
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 997, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 101, 377, 455, 692, 698, 881, 1208
BstNI CCWGG 2 cut(s) 336, 890
BstNSI RCATGY 1 cut(s) 1365
BstSCI CCNGG 2 cut(s) 334, 888
BstSFI CTRYAG 4 cut(s) 687, 873, 1203, 1311
BstV2I GAAGAC 2 cut(s) 57, 581
BstX2I RGATCY 1 cut(s) 997
BstYI RGATCY 1 cut(s) 997
BstZ17I GTATAC 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 3 cut(s) 182, 435, 808
BtgI CCRYGG 1 cut(s) 1249
BtsCI GGATG 4 cut(s) 369, 799, 801, 1189
Cac8I GCNNGC 3 cut(s) 684, 846, 886
CaiI CAGNNNCTG 3 cut(s) 449, 698, 1028
CfoI GCGC 2 cut(s) 905, 1202
Cfr13I GGNCC 2 cut(s) 751, 1019
Csp6I GTAC 1 cut(s) 914
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 6 cut(s) 83, 514, 820, 1009, 1282, 1362
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 3 cut(s) 344, 741, 1110
DpnI GATC 2 cut(s) 999, 1080
DpnII GATC 2 cut(s) 997, 1078
DraI TTTAAA 1 cut(s) 853
DrdI GACNNNNNNGTC 1 cut(s) 725
DseDI GACNNNNNNGTC 1 cut(s) 725
EaeI YGGCCR 1 cut(s) 806
Eam1104I CTCTTC 1 cut(s) 920
EarI CTCTTC 1 cut(s) 920
Eco130I CCWWGG 2 cut(s) 555, 1194
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 751, 1019
Eco57I CTGAAG 3 cut(s) 422, 582, 860
Eco88I CYCGRG 1 cut(s) 1294
EcoRII CCWGG 2 cut(s) 334, 888
EcoT14I CCWWGG 2 cut(s) 555, 1194
ErhI CCWWGG 2 cut(s) 555, 1194
FaeI CATG 6 cut(s) 86, 517, 823, 1012, 1285, 1365
FaqI GGGAC 3 cut(s) 713, 877, 963
FatI CATG 6 cut(s) 82, 513, 819, 1008, 1281, 1361
FauI CCCGC 1 cut(s) 1009
FblI GTMKAC 2 cut(s) 544, 1119
FokI GGATG 4 cut(s) 376, 788, 806, 1176
FspBI CTAG 2 cut(s) 885, 1356
GlaI GCGC 2 cut(s) 904, 1201
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 783, 927
HaeII RGCGCY 2 cut(s) 906, 1203
HaeIII GGCC 3 cut(s) 182, 435, 808
HapII CCGG 1 cut(s) 805
HhaI GCGC 2 cut(s) 905, 1202
Hin1II CATG 6 cut(s) 86, 517, 823, 1012, 1285, 1365
Hin6I GCGC 2 cut(s) 903, 1200
HinP1I GCGC 2 cut(s) 903, 1200
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 3 cut(s) 86, 671, 1145
HpaII CCGG 1 cut(s) 805
HphI GGTGA 4 cut(s) 29, 904, 1082, 1340
Hpy166II GTNNAC 4 cut(s) 415, 545, 751, 1120
Hpy188I TCNGA 6 cut(s) 407, 613, 859, 945, 1128, 1150
Hpy188III TCNNGA 4 cut(s) 389, 919, 973, 1061
Hpy8I GTNNAC 4 cut(s) 415, 545, 751, 1120
HpyAV CCTTC 3 cut(s) 256, 446, 940
HpyCH4III ACNGT 7 cut(s) 325, 397, 412, 520, 587, 1124, 1336
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 377, 455, 692, 698, 881, 1208
HpyF3I CTNAG 3 cut(s) 344, 741, 1110
Hsp92II CATG 6 cut(s) 86, 517, 823, 1012, 1285, 1365
HspAI GCGC 2 cut(s) 903, 1200
Kzo9I GATC 2 cut(s) 997, 1078
LmnI GCTCC 3 cut(s) 337, 649, 908
LweI GCATC 3 cut(s) 710, 810, 1115
MaeI CTAG 2 cut(s) 885, 1356
MaeIII GTNAC 5 cut(s) 581, 604, 637, 778, 1328
MalI GATC 2 cut(s) 999, 1080
MboI GATC 2 cut(s) 997, 1078
MboII GAAGA 7 cut(s) 48, 57, 81, 581, 584, 937, 1141
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 1 cut(s) 1213
MluCI AATT 8 cut(s) 52, 283, 351, 710, 723, 783, 1032, 1133
MnlI CCTC 8 cut(s) 18, 107, 206, 760, 765, 1090, 1163, 1319
MseI TTAA 5 cut(s) 15, 222, 549, 852, 1164
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 4 cut(s) 119, 149, 1004, 1025
MspI CCGG 1 cut(s) 805
MspR9I CCNGG 2 cut(s) 336, 890
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 2 cut(s) 336, 890
MwoI GCNNNNNNNGC 7 cut(s) 101, 377, 455, 692, 698, 881, 1208
NdeII GATC 2 cut(s) 997, 1078
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 6 cut(s) 86, 517, 823, 1012, 1285, 1365
NlaIV GGNNCC 5 cut(s) 252, 333, 399, 753, 999
NmuCI GTSAC 2 cut(s) 581, 1328
NspI RCATGY 1 cut(s) 1365
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 3 cut(s) 86, 671, 1145
PflMI CCANNNNNTGG 1 cut(s) 761
Psp6I CCWGG 2 cut(s) 334, 888
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 334, 888
PspN4I GGNNCC 5 cut(s) 252, 333, 399, 753, 999
PspPI GGNCC 2 cut(s) 751, 1019
PstI CTGCAG 3 cut(s) 691, 877, 1315
PstNI CAGNNNCTG 3 cut(s) 449, 698, 1028
PsuI RGATCY 1 cut(s) 997
PvuII CAGCTG 3 cut(s) 119, 149, 1025
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 5 cut(s) 15, 222, 549, 852, 1164
Sau3AI GATC 2 cut(s) 997, 1078
Sau96I GGNCC 2 cut(s) 751, 1019
ScaI AGTACT 1 cut(s) 915
ScrFI CCNGG 2 cut(s) 336, 890
SduI GDGCHC 1 cut(s) 1213
SfaNI GCATC 3 cut(s) 710, 810, 1115
SfcI CTRYAG 4 cut(s) 687, 873, 1203, 1311
SinI GGWCC 2 cut(s) 751, 1019
SmiI ATTTAAAT 1 cut(s) 853
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 43, 1061
SmoI CTYRAG 2 cut(s) 43, 1061
Sse9I AATT 8 cut(s) 52, 283, 351, 710, 723, 783, 1032, 1133
SsiI CCGC 3 cut(s) 179, 216, 1002
SspMI CTAG 2 cut(s) 885, 1356
StyD4I CCNGG 2 cut(s) 334, 888
StyI CCWWGG 2 cut(s) 555, 1194
SwaI ATTTAAAT 1 cut(s) 853
TaaI ACNGT 7 cut(s) 325, 397, 412, 520, 587, 1124, 1336
TasI AATT 8 cut(s) 52, 283, 351, 710, 723, 783, 1032, 1133
TatI WGTACW 1 cut(s) 913
TauI GCSGC 2 cut(s) 182, 219
TfiI GAWTC 3 cut(s) 86, 671, 1145
Tru1I TTAA 5 cut(s) 15, 222, 549, 852, 1164
Tru9I TTAA 5 cut(s) 15, 222, 549, 852, 1164
TseFI GTSAC 2 cut(s) 581, 1328
Tsp45I GTSAC 2 cut(s) 581, 1328
TspDTI ATGAA 5 cut(s) 99, 417, 454, 938, 1256
TspGWI ACGGA 1 cut(s) 530
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 751, 1019
XapI RAATTY 2 cut(s) 283, 710
XceI RCATGY 1 cut(s) 1365
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XmiI GTMKAC 2 cut(s) 544, 1119
XspI CTAG 2 cut(s) 885, 1356
ZrmI AGTACT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.