Rroxscaffold_7G00183440

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
22518293 .. 22522944
4652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183440.1

Sequence Viewer

Length: 1371 bp
ATGCAGAAAGCTCTTAACAGACAGAGGGTTCTGCTTCACCACTTGAGACCCAATTCTTCTTTGTCTTCTGCAACTCAAACCCATGAATCTTCTGCCCTCTCTGCTTCAATATGTGCAGCTGGGGATAGTGCTGCTTATCATAGAACAGCTGCTTTTGGAGATGATATAGTGATTGTAGCGGCCTACCGAACTGCCATTTGCAAGGCAAAGCGAGGCGGCTTTAAGGATACTTTAGCTGATGATTTACTGGCACCTGTTTTGAAGGCAGTTATAGAAAGGACAAATTTGAACCCAAGTGAAGTAGGGGATATTGTTGTCGGCACAGTTCTGGCTCCTGGCTCACTTAGAGCCATTGAGTGCAGGATGGCAGCATTCTATGCTGGTTTTCCTGATACGGTTCCCATCAGAACCGTCAACAGGCAATGTTCATCTGGCCTTCAGGCAGTTGCTGATGTAGCTGCATTCATAAAGGCAGGGTATTATGACATTGGCATTGCAGCAGGAGTGGAGTGCATGACAGTTGATAGCATTGGTAGTGTCCGTAGACTTAACCCCAAGGCTGAAGCCTTTGCACAAGCCCGTGACTGTCTTCTTCCTATGGGTGTTACTTCTGAAAATGTTGCACAGCGTTATGGTGTAACACGACAGGAGCAAGACCAAGCTGCTGTTGAATCACATAGGCGTGCTGCTGCAGCAACTGCATCTGGTAAATTCAAAGACGAAATTGTCCCTGTATCTACTAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTACGATTTCTGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCGGGAAATGCTAGCCAGGTGAGTGATGGCGCTGGAGCAGTACTCCTGATGAAGAGAAGTGTAGCTATTCAGAAGGGACTTCCTATTATTGGTGTTTTCAGGAGTTTTGCTGCTGTTGGTGTGGATCCCGCTGTCATGGGCATAGGTCCAGCTGCTGCAATTCCAGTAGCTGTGAAATCTGCTGGTCTTGAGCTTGGCGATATTGATCTATTTGAAATAAATGAGGCATTTGCCTCTCAGTATGTATACTGTCAGAAGAAATTGGAACTTGATTCCGAAAAAGTCAACGTCAATGGAGGTGCTATTGCTCTGGGTCATCCCTTAGGTGCTACAGGTGCTCGGTGTGTTGCAACCCTATTGAATGAGATGAAACGCCGCGGCAAGGATTGTCGTTTTGGTGTAATCTCCATGTGCATAGGCTCGGGTATGGGGGCTGCTGCTGTTTTGGAAAGAGGTGACTCGGTTGATGAGCTATGCAATGCTAGAACATGCAGTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

47.75

Weight (kDa)

8.2

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 56 - 311 2.8e-76 Thiolase, N-terminal domain
Thiolase_C PF02803 320 - 442 1.3e-48 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009799)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 2 cut(s) 544, 1119
AccII CGCG 1 cut(s) 1251
AciI CCGC 6 cut(s) 179, 216, 875, 1002, 1249, 1251
AclWI GGATC 2 cut(s) 992, 1005
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 2 cut(s) 283, 710
AcuI CTGAAG 2 cut(s) 422, 582
AfaI GTAC 1 cut(s) 915
AfiI CCNNNNNNNGG 4 cut(s) 417, 761, 962, 1255
AgsI TTSAA 8 cut(s) 108, 262, 289, 671, 715, 841, 1088, 1234
AjnI CCWGG 2 cut(s) 334, 888
Alw21I GWGCWC 1 cut(s) 1213
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 2 cut(s) 992, 1005
AlwNI CAGNNNCTG 4 cut(s) 449, 698, 1028, 1043
Ama87I CYCGRG 1 cut(s) 1294
AoxI GGCC 3 cut(s) 180, 433, 806
ApoI RAATTY 2 cut(s) 283, 710
AspLEI GCGC 1 cut(s) 905
AspS9I GGNCC 2 cut(s) 751, 1019
AsuHPI GGTGA 3 cut(s) 29, 904, 1340
AsuNHI GCTAGC 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 1294
AvaII GGWCC 2 cut(s) 751, 1019
AxyI CCTNAGG 1 cut(s) 1195
BamHI GGATCC 1 cut(s) 997
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 57, 581
Bbv12I GWGCWC 1 cut(s) 1213
BccI CCATC 5 cut(s) 358, 410, 791, 854, 893
BciT130I CCWGG 2 cut(s) 336, 890
BciVI GTATCC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 885, 1356
BfmI CTRYAG 2 cut(s) 690, 1203
BfoI RGCGCY 1 cut(s) 906
BfuI GTATCC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 2 cut(s) 336, 890
Bme18I GGWCC 2 cut(s) 751, 1019
BmeT110I CYCGRG 1 cut(s) 1294
BmgT120I GGNCC 2 cut(s) 751, 1019
BmiI GGNNCC 5 cut(s) 252, 333, 399, 753, 999
BmrFI CCNGG 2 cut(s) 336, 890
BmsI GCATC 2 cut(s) 710, 810
BmtI GCTAGC 1 cut(s) 888
BpiI GAAGAC 2 cut(s) 57, 581
BplI GAGNNNNNCTC 2 cut(s) 900, 932
BpmI CTGGAG 2 cut(s) 783, 927
BpuEI CTTGAG 2 cut(s) 64, 1082
BsaBI GATNNNNATC 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 555, 1249
Bsc4I CCNNNNNNNGG 4 cut(s) 417, 761, 962, 1255
Bse1I ACTGG 3 cut(s) 252, 766, 1037
Bse21I CCTNAGG 1 cut(s) 1195
Bse3DI GCAATG 3 cut(s) 428, 492, 1357
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 2 cut(s) 336, 890
BseDI CCNNGG 2 cut(s) 555, 1249
BseGI GGATG 4 cut(s) 369, 799, 801, 1189
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 4 cut(s) 417, 761, 962, 1255
BseMI GCAATG 3 cut(s) 428, 492, 1357
BseMII CTCAG 1 cut(s) 1124
BseNI ACTGG 3 cut(s) 252, 766, 1037
BseRI GAGGAG 1 cut(s) 782
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 2 cut(s) 135, 379
Bsh1236I CGCG 1 cut(s) 1251
BshFI GGCC 3 cut(s) 182, 435, 808
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 1213
BsiHKCI CYCGRG 1 cut(s) 1294
BsiSI CCGG 1 cut(s) 805
BslFI GGGAC 3 cut(s) 713, 877, 963
BslI CCNNNNNNNGG 4 cut(s) 417, 761, 962, 1255
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 713, 877, 963
BsmI GAATGC 2 cut(s) 371, 461
BsnI GGCC 3 cut(s) 182, 435, 808
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 1294
Bsp1286I GDGCHC 1 cut(s) 1213
Bsp143I GATC 2 cut(s) 997, 1078
BspACI CCGC 6 cut(s) 179, 216, 875, 1002, 1249, 1251
BspANI GGCC 3 cut(s) 182, 435, 808
BspCNI CTCAG 1 cut(s) 1123
BspFNI CGCG 1 cut(s) 1251
BspLI GGNNCC 5 cut(s) 252, 333, 399, 753, 999
BspMAI CTGCAG 1 cut(s) 694
BspOI GCTAGC 1 cut(s) 888
BspPI GGATC 2 cut(s) 992, 1005
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 3 cut(s) 428, 492, 1357
BsrI ACTGG 3 cut(s) 252, 766, 1037
BssECI CCNNGG 2 cut(s) 555, 1249
BssMI GATC 2 cut(s) 997, 1078
BssNAI GTATAC 1 cut(s) 1120
BssT1I CCWWGG 1 cut(s) 555
Bst1107I GTATAC 1 cut(s) 1120
Bst2UI CCWGG 2 cut(s) 336, 890
Bst4CI ACNGT 6 cut(s) 325, 397, 412, 520, 587, 1124
Bst6I CTCTTC 1 cut(s) 920
BstAPI GCANNNNNTGC 2 cut(s) 377, 698
BstC8I GCNNGC 3 cut(s) 684, 846, 886
BstDEI CTNAG 4 cut(s) 344, 741, 1110, 1195
BstDSI CCRYGG 1 cut(s) 1249
BstF5I GGATG 4 cut(s) 369, 799, 801, 1189
BstFNI CGCG 1 cut(s) 1251
BstH2I RGCGCY 1 cut(s) 906
BstHHI GCGC 1 cut(s) 905
BstKTI GATC 2 cut(s) 1000, 1081
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 997, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 101, 377, 455, 692, 698, 881, 1208
BstNI CCWGG 2 cut(s) 336, 890
BstNSI RCATGY 2 cut(s) 779, 1365
BstSCI CCNGG 2 cut(s) 334, 888
BstSFI CTRYAG 2 cut(s) 690, 1203
BstUI CGCG 1 cut(s) 1251
BstV2I GAAGAC 2 cut(s) 57, 581
BstX2I RGATCY 1 cut(s) 997
BstYI RGATCY 1 cut(s) 997
BstZ17I GTATAC 1 cut(s) 1120
Bsu36I CCTNAGG 1 cut(s) 1195
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 3 cut(s) 182, 435, 808
BtgI CCRYGG 1 cut(s) 1249
BtsCI GGATG 4 cut(s) 369, 799, 801, 1189
Cac8I GCNNGC 3 cut(s) 684, 846, 886
CaiI CAGNNNCTG 4 cut(s) 449, 698, 1028, 1043
CfoI GCGC 1 cut(s) 905
Cfr13I GGNCC 2 cut(s) 751, 1019
Cfr42I CCGCGG 1 cut(s) 1252
Csp6I GTAC 1 cut(s) 914
CviAII CATG 7 cut(s) 83, 514, 776, 820, 1009, 1282, 1362
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 4 cut(s) 344, 741, 1110, 1195
DpnI GATC 2 cut(s) 999, 1080
DpnII GATC 2 cut(s) 997, 1078
DraI TTTAAA 1 cut(s) 853
DrdI GACNNNNNNGTC 1 cut(s) 725
DseDI GACNNNNNNGTC 1 cut(s) 725
EaeI YGGCCR 1 cut(s) 806
Eam1104I CTCTTC 1 cut(s) 920
EarI CTCTTC 1 cut(s) 920
Eco130I CCWWGG 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 751, 1019
Eco57I CTGAAG 2 cut(s) 422, 582
Eco81I CCTNAGG 1 cut(s) 1195
Eco88I CYCGRG 1 cut(s) 1294
EcoRII CCWGG 2 cut(s) 334, 888
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 7 cut(s) 86, 517, 779, 823, 1012, 1285, 1365
FaqI GGGAC 3 cut(s) 713, 877, 963
FatI CATG 7 cut(s) 82, 513, 775, 819, 1008, 1281, 1361
FauI CCCGC 2 cut(s) 868, 1009
FblI GTMKAC 2 cut(s) 544, 1119
FokI GGATG 4 cut(s) 376, 788, 806, 1176
FspBI CTAG 2 cut(s) 885, 1356
GlaI GCGC 1 cut(s) 904
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 783, 927
HaeII RGCGCY 1 cut(s) 906
HaeIII GGCC 3 cut(s) 182, 435, 808
HapII CCGG 1 cut(s) 805
HhaI GCGC 1 cut(s) 905
Hin1II CATG 7 cut(s) 86, 517, 779, 823, 1012, 1285, 1365
Hin6I GCGC 1 cut(s) 903
HinP1I GCGC 1 cut(s) 903
HincII GTYRAC 2 cut(s) 415, 1159
HindII GTYRAC 2 cut(s) 415, 1159
HinfI GANTC 4 cut(s) 86, 671, 1145, 1331
HpaII CCGG 1 cut(s) 805
HphI GGTGA 3 cut(s) 29, 904, 1340
Hpy166II GTNNAC 5 cut(s) 415, 545, 751, 1120, 1159
Hpy188I TCNGA 6 cut(s) 407, 613, 859, 945, 1128, 1150
Hpy188III TCNNGA 4 cut(s) 389, 919, 973, 1061
Hpy8I GTNNAC 5 cut(s) 415, 545, 751, 1120, 1159
HpyAV CCTTC 3 cut(s) 256, 446, 940
HpyCH4III ACNGT 6 cut(s) 325, 397, 412, 520, 587, 1124
HpyCH4IV ACGT 1 cut(s) 1161
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 377, 455, 692, 698, 881, 1208
HpyF3I CTNAG 4 cut(s) 344, 741, 1110, 1195
HpySE526I ACGT 1 cut(s) 1161
Hsp92II CATG 7 cut(s) 86, 517, 779, 823, 1012, 1285, 1365
HspAI GCGC 1 cut(s) 903
KspI CCGCGG 1 cut(s) 1252
Kzo9I GATC 2 cut(s) 997, 1078
LmnI GCTCC 3 cut(s) 337, 649, 908
LweI GCATC 2 cut(s) 710, 810
MaeI CTAG 2 cut(s) 885, 1356
MaeII ACGT 1 cut(s) 1161
MaeIII GTNAC 5 cut(s) 581, 604, 637, 778, 1328
MalI GATC 2 cut(s) 999, 1080
MboI GATC 2 cut(s) 997, 1078
MboII GAAGA 7 cut(s) 48, 57, 81, 581, 584, 937, 1141
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 1 cut(s) 1213
MluCI AATT 7 cut(s) 52, 283, 710, 723, 836, 1032, 1133
MlyI GAGTC 1 cut(s) 1325
MnlI CCTC 9 cut(s) 18, 107, 206, 760, 765, 1090, 1117, 1163, 1319
MseI TTAA 4 cut(s) 15, 222, 549, 852
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 5 cut(s) 119, 149, 1004, 1025, 1251
MspI CCGG 1 cut(s) 805
MspR9I CCNGG 2 cut(s) 336, 890
Mva1269I GAATGC 2 cut(s) 371, 461
MvaI CCWGG 2 cut(s) 336, 890
MvnI CGCG 1 cut(s) 1251
MwoI GCNNNNNNNGC 7 cut(s) 101, 377, 455, 692, 698, 881, 1208
NdeII GATC 2 cut(s) 997, 1078
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 7 cut(s) 86, 517, 779, 823, 1012, 1285, 1365
NlaIV GGNNCC 5 cut(s) 252, 333, 399, 753, 999
NmuCI GTSAC 2 cut(s) 581, 1328
NspI RCATGY 2 cut(s) 779, 1365
PctI GAATGC 2 cut(s) 371, 461
PfeI GAWTC 3 cut(s) 86, 671, 1145
PflMI CCANNNNNTGG 1 cut(s) 761
PleI GAGTC 1 cut(s) 1325
PpsI GAGTC 1 cut(s) 1325
Psp6I CCWGG 2 cut(s) 334, 888
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 334, 888
PspN4I GGNNCC 5 cut(s) 252, 333, 399, 753, 999
PspPI GGNCC 2 cut(s) 751, 1019
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 4 cut(s) 449, 698, 1028, 1043
PsuI RGATCY 1 cut(s) 997
PvuII CAGCTG 3 cut(s) 119, 149, 1025
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
RseI CAYNNNNRTG 1 cut(s) 681
SacII CCGCGG 1 cut(s) 1252
SaqAI TTAA 4 cut(s) 15, 222, 549, 852
Sau3AI GATC 2 cut(s) 997, 1078
Sau96I GGNCC 2 cut(s) 751, 1019
ScaI AGTACT 1 cut(s) 915
SchI GAGTC 1 cut(s) 1325
ScrFI CCNGG 2 cut(s) 336, 890
SduI GDGCHC 1 cut(s) 1213
SfaNI GCATC 2 cut(s) 710, 810
SfcI CTRYAG 2 cut(s) 690, 1203
Sfr303I CCGCGG 1 cut(s) 1252
SgrBI CCGCGG 1 cut(s) 1252
SinI GGWCC 2 cut(s) 751, 1019
SmiI ATTTAAAT 1 cut(s) 853
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 43, 1061
SmoI CTYRAG 2 cut(s) 43, 1061
Sse9I AATT 7 cut(s) 52, 283, 710, 723, 836, 1032, 1133
SsiI CCGC 6 cut(s) 179, 216, 875, 1002, 1249, 1251
SspMI CTAG 2 cut(s) 885, 1356
StyD4I CCNGG 2 cut(s) 334, 888
StyI CCWWGG 1 cut(s) 555
SwaI ATTTAAAT 1 cut(s) 853
TaaI ACNGT 6 cut(s) 325, 397, 412, 520, 587, 1124
TaiI ACGT 1 cut(s) 1164
TasI AATT 7 cut(s) 52, 283, 710, 723, 836, 1032, 1133
TatI WGTACW 1 cut(s) 913
TauI GCSGC 4 cut(s) 182, 219, 1251, 1254
TfiI GAWTC 3 cut(s) 86, 671, 1145
Tru1I TTAA 4 cut(s) 15, 222, 549, 852
Tru9I TTAA 4 cut(s) 15, 222, 549, 852
TseFI GTSAC 2 cut(s) 581, 1328
Tsp45I GTSAC 2 cut(s) 581, 1328
TspDTI ATGAA 5 cut(s) 99, 417, 454, 938, 1256
TspGWI ACGGA 1 cut(s) 530
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 751, 1019
XapI RAATTY 2 cut(s) 283, 710
XceI RCATGY 2 cut(s) 779, 1365
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XmiI GTMKAC 2 cut(s) 544, 1119
XspI CTAG 2 cut(s) 885, 1356
ZrmI AGTACT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.