Rh6AG283100

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009799
Physical Location & Seq
Reverse (-)
47889807 .. 47895416
5610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG283100.1

Sequence Viewer

Length: 1275 bp
ATGGAGAAAGCTCTTAACAGACAGAGGGTTCTGCTTCACCACTTGAGACCCAATTCTTCTTTGTCTTCTGCAACTCAAACCCATGAATCTTCTGCCCTCTCTGCTTCAATATGTGCAGCTGGGGATAGTGCTGCTTATCATAGAACAGCTGCTTTTGGAGATGATATAGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTTGTCGGCACAGTTCTGGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGCTGGTTTTCCTGATACGGTTCCCATCAGAACCGTCAACAGACAATGTTCATCTGGCCTTCAGGCAGTTGCTGATGTAGCTGCATTCATAAAGGCAGGGTATTATGACATTGGCATTGCAGCAGGAGTGGAGTGCATGACAGTTGATAGCATTGGTAGTGTCCGTAGACTTAACCCCAAGGCTGAAGCCTTTGCACAAGCCCGTGACTGTCTTCTTCCTATGGGTGTTACTTCTGAAAATGTTGCACAGCGTTATGGTGTAACACGACAGGAGCAAGACCAAGCTGCTGTTGAATCACATAGGCGTGCTACTGCAGCAACTGCATCTGGTAAATTCAAAGACGAAATTGTCCCTGTATCTACTAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCGTGTTACAATTTCTGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAACTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTGAGTGATGGCGCTGGAGCAGTACTCCTGATGAAGAGAAGTGTAGCTATTCAGAAGGGACTTCCTATTATTGGTGTTTTCAGGAGTTTTGCTGCTGTTGGTGTGGATCCCGCTGTCATGGGCATAGGTCCAGCTGCTGCAATTCCAGTAGCCGTGAAATCTGCTGGTCTTGAGCTTGGTGATATTGATCTATTTGAAATAAATGAGGCGTTTGCATCTCAGTATGTATACTGTCAGAAGAAATTGGAACTTGATTCCGAAAAAGTCAATGTTAATGGAGGTGCTATTGCTTTGGGTCATCCCTTGGGCGCTACAGGTGCTCGGTGTGTTGCAACTCTATTGAATGAGATGAAACGCCGTGGCAAGGATTGTCGTTTTGGTGTAATCTCCATGTGCATAGGCTCGGGTATGGGGGCTGCTGCAGTTTTGGAAAGAGGTGACACGGTTGATGAGCTATGCAATGCTAGAACATGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

424

Amino Acids

44.42

Weight (kDa)

6.99

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 57 - 279 2.7e-65 Thiolase, N-terminal domain
Thiolase_C PF02803 288 - 410 1.1e-48 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48880 AT5G48880 AT5G48880 AT5G48880
fragaria_vesca FvH4_2g19500
malus_domestica MD05G1179100.v1.1 MD06G1074100.v1.1 MD10G1167800.v1.1
prunus_persica Prupe.8G206400_v2.0.a1
pyrus_communis pycom05g16560
rosa_chinensis RchiOBHm_Chr6g0285181
rosa_laevigata RLG00000012663
rosa_multiflora Rmu_sc0005710.1_g000006 Rmu_sc0006801.1_g000004
rosa_roxburghii Rroxscaffold_7G00183440
rosa_rugosa Rorug06G0173100
rosa_samantha Rh6AG283100 Rh6CG285800 Rh6DG278800
rosa_wichuraiana Rw0G000370 Rw6G024390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 665
AccI GTMKAC 2 cut(s) 448, 1023
AciI CCGC 1 cut(s) 906
AclWI GGATC 2 cut(s) 896, 909
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 2 cut(s) 187, 614
AcuI CTGAAG 3 cut(s) 326, 486, 764
AfaI GTAC 1 cut(s) 819
AfiI CCNNNNNNNGG 3 cut(s) 665, 866, 1159
AgsI TTSAA 6 cut(s) 108, 193, 575, 619, 992, 1138
AjnI CCWGG 2 cut(s) 238, 792
AluBI AGCT 9 cut(s) 11, 119, 149, 362, 566, 842, 929, 970, 1249
AluI AGCT 9 cut(s) 11, 119, 149, 362, 566, 842, 929, 970, 1249
Alw21I GWGCWC 1 cut(s) 1117
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 2 cut(s) 896, 909
AlwNI CAGNNNCTG 3 cut(s) 353, 602, 932
Ama87I CYCGRG 1 cut(s) 1198
AoxI GGCC 2 cut(s) 337, 710
ApoI RAATTY 2 cut(s) 187, 614
AspLEI GCGC 2 cut(s) 809, 1106
AspS9I GGNCC 2 cut(s) 655, 923
AsuHPI GGTGA 4 cut(s) 29, 808, 986, 1244
AsuNHI GCTAGC 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 1198
AvaII GGWCC 2 cut(s) 655, 923
BamHI GGATCC 1 cut(s) 901
BbsI GAAGAC 2 cut(s) 57, 485
Bbv12I GWGCWC 1 cut(s) 1117
BccI CCATC 5 cut(s) 262, 314, 695, 758, 797
BceAI ACGGC 2 cut(s) 932, 1137
BciT130I CCWGG 2 cut(s) 240, 794
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 789, 1260
BfmI CTRYAG 4 cut(s) 594, 777, 1107, 1215
BfoI RGCGCY 2 cut(s) 810, 1107
BmcAI AGTACT 1 cut(s) 819
Bme1390I CCNGG 2 cut(s) 240, 794
Bme18I GGWCC 2 cut(s) 655, 923
BmeT110I CYCGRG 1 cut(s) 1198
BmgT120I GGNCC 2 cut(s) 655, 923
BmiI GGNNCC 4 cut(s) 237, 303, 657, 903
BmrFI CCNGG 2 cut(s) 240, 794
BmsI GCATC 3 cut(s) 614, 714, 1019
BmtI GCTAGC 1 cut(s) 792
BpiI GAAGAC 2 cut(s) 57, 485
BplI GAGNNNNNCTC 2 cut(s) 804, 836
BpmI CTGGAG 2 cut(s) 687, 831
BpuEI CTTGAG 2 cut(s) 64, 986
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 459, 1098, 1153
Bsc4I CCNNNNNNNGG 3 cut(s) 665, 866, 1159
Bse1I ACTGG 2 cut(s) 670, 941
Bse3DI GCAATG 2 cut(s) 396, 1261
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 2 cut(s) 240, 794
BseDI CCNNGG 3 cut(s) 459, 1098, 1153
BseGI GGATG 4 cut(s) 273, 703, 705, 1093
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 3 cut(s) 665, 866, 1159
BseMI GCAATG 2 cut(s) 396, 1261
BseMII CTCAG 1 cut(s) 1028
BseNI ACTGG 2 cut(s) 670, 941
BseRI GAGGAG 1 cut(s) 686
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 2 cut(s) 135, 283
BshFI GGCC 2 cut(s) 339, 712
BsiHKAI GWGCWC 1 cut(s) 1117
BsiHKCI CYCGRG 1 cut(s) 1198
BsiSI CCGG 1 cut(s) 709
BslFI GGGAC 3 cut(s) 617, 781, 867
BslI CCNNNNNNNGG 3 cut(s) 665, 866, 1159
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 617, 781, 867
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 2 cut(s) 339, 712
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 1198
Bsp1286I GDGCHC 1 cut(s) 1117
Bsp143I GATC 2 cut(s) 901, 982
BspACI CCGC 1 cut(s) 906
BspANI GGCC 2 cut(s) 339, 712
BspCNI CTCAG 1 cut(s) 1027
BspLI GGNNCC 4 cut(s) 237, 303, 657, 903
BspMAI CTGCAG 3 cut(s) 598, 781, 1219
BspOI GCTAGC 1 cut(s) 792
BspPI GGATC 2 cut(s) 896, 909
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 396, 1261
BsrI ACTGG 2 cut(s) 670, 941
BssECI CCNNGG 3 cut(s) 459, 1098, 1153
BssMI GATC 2 cut(s) 901, 982
BssNAI GTATAC 1 cut(s) 1024
BssT1I CCWWGG 2 cut(s) 459, 1098
Bst1107I GTATAC 1 cut(s) 1024
Bst2UI CCWGG 2 cut(s) 240, 794
Bst4CI ACNGT 7 cut(s) 229, 301, 316, 424, 491, 1028, 1240
Bst6I CTCTTC 1 cut(s) 824
BstAPI GCANNNNNTGC 3 cut(s) 281, 602, 785
BstC8I GCNNGC 3 cut(s) 588, 750, 790
BstDEI CTNAG 3 cut(s) 248, 645, 1014
BstDSI CCRYGG 1 cut(s) 1153
BstF5I GGATG 4 cut(s) 273, 703, 705, 1093
BstH2I RGCGCY 2 cut(s) 810, 1107
BstHHI GCGC 2 cut(s) 809, 1106
BstKTI GATC 2 cut(s) 904, 985
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 901, 982
BstMWI GCNNNNNNNGC 7 cut(s) 101, 281, 359, 596, 602, 785, 1112
BstNI CCWGG 2 cut(s) 240, 794
BstNSI RCATGY 1 cut(s) 1269
BstSCI CCNGG 2 cut(s) 238, 792
BstSFI CTRYAG 4 cut(s) 594, 777, 1107, 1215
BstV2I GAAGAC 2 cut(s) 57, 485
BstX2I RGATCY 1 cut(s) 901
BstYI RGATCY 1 cut(s) 901
BstZ17I GTATAC 1 cut(s) 1024
BsuRI GGCC 2 cut(s) 339, 712
BtgI CCRYGG 1 cut(s) 1153
BtsCI GGATG 4 cut(s) 273, 703, 705, 1093
Cac8I GCNNGC 3 cut(s) 588, 750, 790
CaiI CAGNNNCTG 3 cut(s) 353, 602, 932
CfoI GCGC 2 cut(s) 809, 1106
Cfr13I GGNCC 2 cut(s) 655, 923
Csp6I GTAC 1 cut(s) 818
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 6 cut(s) 83, 418, 724, 913, 1186, 1266
CviQI GTAC 1 cut(s) 818
DdeI CTNAG 3 cut(s) 248, 645, 1014
DpnI GATC 2 cut(s) 903, 984
DpnII GATC 2 cut(s) 901, 982
DraI TTTAAA 1 cut(s) 757
DrdI GACNNNNNNGTC 1 cut(s) 629
DseDI GACNNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 710
Eam1104I CTCTTC 1 cut(s) 824
EarI CTCTTC 1 cut(s) 824
Eco130I CCWWGG 2 cut(s) 459, 1098
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 655, 923
Eco57I CTGAAG 3 cut(s) 326, 486, 764
Eco88I CYCGRG 1 cut(s) 1198
EcoRII CCWGG 2 cut(s) 238, 792
EcoT14I CCWWGG 2 cut(s) 459, 1098
ErhI CCWWGG 2 cut(s) 459, 1098
FaeI CATG 6 cut(s) 86, 421, 727, 916, 1189, 1269
FaqI GGGAC 3 cut(s) 617, 781, 867
FatI CATG 6 cut(s) 82, 417, 723, 912, 1185, 1265
FauI CCCGC 1 cut(s) 913
FblI GTMKAC 2 cut(s) 448, 1023
FokI GGATG 4 cut(s) 280, 692, 710, 1080
FspBI CTAG 2 cut(s) 789, 1260
GlaI GCGC 2 cut(s) 808, 1105
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 687, 831
HaeII RGCGCY 2 cut(s) 810, 1107
HaeIII GGCC 2 cut(s) 339, 712
HapII CCGG 1 cut(s) 709
HhaI GCGC 2 cut(s) 809, 1106
Hin1II CATG 6 cut(s) 86, 421, 727, 916, 1189, 1269
Hin6I GCGC 2 cut(s) 807, 1104
HinP1I GCGC 2 cut(s) 807, 1104
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 3 cut(s) 86, 575, 1049
HpaII CCGG 1 cut(s) 709
HphI GGTGA 4 cut(s) 29, 808, 986, 1244
Hpy166II GTNNAC 4 cut(s) 319, 449, 655, 1024
Hpy188I TCNGA 6 cut(s) 311, 517, 763, 849, 1032, 1054
Hpy188III TCNNGA 4 cut(s) 293, 823, 877, 965
Hpy8I GTNNAC 4 cut(s) 319, 449, 655, 1024
HpyAV CCTTC 2 cut(s) 350, 844
HpyCH4III ACNGT 7 cut(s) 229, 301, 316, 424, 491, 1028, 1240
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 281, 359, 596, 602, 785, 1112
HpyF3I CTNAG 3 cut(s) 248, 645, 1014
Hsp92II CATG 6 cut(s) 86, 421, 727, 916, 1189, 1269
HspAI GCGC 2 cut(s) 807, 1104
Kzo9I GATC 2 cut(s) 901, 982
LmnI GCTCC 3 cut(s) 241, 553, 812
LweI GCATC 3 cut(s) 614, 714, 1019
MaeI CTAG 2 cut(s) 789, 1260
MaeIII GTNAC 5 cut(s) 485, 508, 541, 682, 1232
MalI GATC 2 cut(s) 903, 984
MboI GATC 2 cut(s) 901, 982
MboII GAAGA 7 cut(s) 48, 57, 81, 485, 488, 841, 1045
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 1 cut(s) 1117
MluCI AATT 8 cut(s) 52, 187, 255, 614, 627, 687, 936, 1037
MnlI CCTC 7 cut(s) 18, 107, 664, 669, 994, 1067, 1223
MseI TTAA 4 cut(s) 15, 453, 756, 1068
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 4 cut(s) 119, 149, 908, 929
MspI CCGG 1 cut(s) 709
MspR9I CCNGG 2 cut(s) 240, 794
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 2 cut(s) 240, 794
MwoI GCNNNNNNNGC 7 cut(s) 101, 281, 359, 596, 602, 785, 1112
NdeII GATC 2 cut(s) 901, 982
NheI GCTAGC 1 cut(s) 788
NlaIII CATG 6 cut(s) 86, 421, 727, 916, 1189, 1269
NlaIV GGNNCC 4 cut(s) 237, 303, 657, 903
NmuCI GTSAC 2 cut(s) 485, 1232
NspI RCATGY 1 cut(s) 1269
PctI GAATGC 1 cut(s) 365
PfeI GAWTC 3 cut(s) 86, 575, 1049
PflMI CCANNNNNTGG 1 cut(s) 665
Psp6I CCWGG 2 cut(s) 238, 792
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 238, 792
PspN4I GGNNCC 4 cut(s) 237, 303, 657, 903
PspPI GGNCC 2 cut(s) 655, 923
PstI CTGCAG 3 cut(s) 598, 781, 1219
PstNI CAGNNNCTG 3 cut(s) 353, 602, 932
PsuI RGATCY 1 cut(s) 901
PvuII CAGCTG 3 cut(s) 119, 149, 929
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 4 cut(s) 15, 453, 756, 1068
Sau3AI GATC 2 cut(s) 901, 982
Sau96I GGNCC 2 cut(s) 655, 923
ScaI AGTACT 1 cut(s) 819
ScrFI CCNGG 2 cut(s) 240, 794
SduI GDGCHC 1 cut(s) 1117
SfaNI GCATC 3 cut(s) 614, 714, 1019
SfcI CTRYAG 4 cut(s) 594, 777, 1107, 1215
SinI GGWCC 2 cut(s) 655, 923
SmiI ATTTAAAT 1 cut(s) 757
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 2 cut(s) 43, 965
SmoI CTYRAG 2 cut(s) 43, 965
Sse9I AATT 8 cut(s) 52, 187, 255, 614, 627, 687, 936, 1037
SsiI CCGC 1 cut(s) 906
SspMI CTAG 2 cut(s) 789, 1260
StyD4I CCNGG 2 cut(s) 238, 792
StyI CCWWGG 2 cut(s) 459, 1098
SwaI ATTTAAAT 1 cut(s) 757
TaaI ACNGT 7 cut(s) 229, 301, 316, 424, 491, 1028, 1240
TasI AATT 8 cut(s) 52, 187, 255, 614, 627, 687, 936, 1037
TatI WGTACW 1 cut(s) 817
TfiI GAWTC 3 cut(s) 86, 575, 1049
Tru1I TTAA 4 cut(s) 15, 453, 756, 1068
Tru9I TTAA 4 cut(s) 15, 453, 756, 1068
TseFI GTSAC 2 cut(s) 485, 1232
Tsp45I GTSAC 2 cut(s) 485, 1232
TspDTI ATGAA 5 cut(s) 99, 321, 358, 842, 1160
TspGWI ACGGA 1 cut(s) 434
Van91I CCANNNNNTGG 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 655, 923
XapI RAATTY 2 cut(s) 187, 614
XceI RCATGY 1 cut(s) 1269
XcmI CCANNNNNNNNNTGG 1 cut(s) 800
XmiI GTMKAC 2 cut(s) 448, 1023
XspI CTAG 2 cut(s) 789, 1260
ZrmI AGTACT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.