RLG00000012663

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009799
Physical Location & Seq
Forward (+)
21036756 .. 21041000
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012663

Sequence Viewer

Length: 1227 bp
ATGGAGAAAGCTCTTAACAGACAGAGGGTTCTGCTTCACCACTTGAGACCCAATTCTTCTTTGTCTTCTGCAACTCAAACCCATGAATCCTCTGCCCTCTCTGCTTCAATATGTGCAGCTGGGGATAATGCTGCTTATCATAGAACAGCTGCTTTTGGAGATGATATAGTGATTGTAGCGGCCTACCGAACTGCCATTTGCAAGGCAAAGCGAGGCGGCTTTAAGGATACTTTAGCTGATGATTTACTGGCACCTGTTTTGAAGAGGAAAGAATGTCGAGTCTTGGGATTTGTATATACGGTTCCCATCAGAACCGTCAACAGGCAATGTTCATCTGGCCTTCAGGCAGTTGCTGATGTAGCTGCATTCATAAAGGCAGGGTATTATGACATTGGCATTGCAGCAGGAGTGGAGTGCATGACAGTTGATAGCATTGGTAGTATCCGTAGACTTAACCCCAAGGCTGAAGCCTTTGCACAAGCCCGCGACTGTCTTCTTCCTATGGGTGTTACTTCTGAAAATGTTGCACAGCGTTATGGTGTAACACGACAAGAGCAAGACCAAGCTGCTGTAGATGAACTGTTATATAGTGCATCTGTTATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTACAATTTCTGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCGGGAAATGCTAGCCAGGTGAGTGATGGTGCTGGAGCAGTACTCCTGATGAAGAGAAGTGTAGCTATTCAGAAGGGACTTCCTATTATTGGTGTTTTCAGGAGTTTTGCTGCTGTTGGTGTGGATCCCGCTGTCATGGGCATAGGTCCAGCTGCTGCAATTCCAGTAGCCGTGAAATCTGCTGGTCTTGAGCTTGGCGATATTGATCTATTTGAAATAAATGAGGCATTTGCCTCTCAGTATGTATACTGTCAGAAGAAATTGGAACTTGATTCCGAAAAAGTCAACGTCAATGGAGGTGCTATTGCTCTGGGTCATCCCTTAGGTGCTACAGGTGCTCGGTGTGTTGCAACCCTATTGAATGAGATGAAACGCCGCGGCAAGGATTGTCGTTTTGGTGTAATCTCCATGTGCATAGGCTCGGGTATGGGGGCTGCTGCAGTTTTGGAAAGAGGTGACTCGGTTGATGAGCTATGCAATGCTAGAACATGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

409

Amino Acids

42.98

Weight (kDa)

7.93

Isoelectric Point (pI)

25.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 88 - 263 1.2e-39 Thiolase, N-terminal domain
Thiolase_C PF02803 272 - 394 1e-48 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009799)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48880 AT5G48880 AT5G48880 AT5G48880
fragaria_vesca FvH4_2g19500
malus_domestica MD05G1179100.v1.1 MD06G1074100.v1.1 MD10G1167800.v1.1
prunus_persica Prupe.8G206400_v2.0.a1
pyrus_communis pycom05g16560
rosa_chinensis RchiOBHm_Chr6g0285181
rosa_laevigata RLG00000012663
rosa_multiflora Rmu_sc0005710.1_g000006 Rmu_sc0006801.1_g000004
rosa_roxburghii Rroxscaffold_7G00183440
rosa_rugosa Rorug06G0173100
rosa_samantha Rh6AG283100 Rh6CG285800 Rh6DG278800
rosa_wichuraiana Rw0G000370 Rw6G024390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 617
AccI GTMKAC 2 cut(s) 448, 975
AccII CGCG 2 cut(s) 486, 1107
AciI CCGC 7 cut(s) 179, 216, 484, 731, 858, 1105, 1107
AclWI GGATC 2 cut(s) 848, 861
AcoI YGGCCR 1 cut(s) 662
AcuI CTGAAG 2 cut(s) 326, 486
AfaI GTAC 1 cut(s) 771
AfiI CCNNNNNNNGG 4 cut(s) 321, 617, 818, 1111
AgsI TTSAA 5 cut(s) 108, 262, 697, 944, 1090
AjnI CCWGG 1 cut(s) 744
Alw21I GWGCWC 1 cut(s) 1069
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 2 cut(s) 848, 861
AlwNI CAGNNNCTG 2 cut(s) 353, 884
Ama87I CYCGRG 1 cut(s) 1150
AoxI GGCC 3 cut(s) 180, 337, 662
AspS9I GGNCC 2 cut(s) 607, 875
AsuHPI GGTGA 3 cut(s) 29, 760, 1196
AsuNHI GCTAGC 1 cut(s) 740
AvaI CYCGRG 1 cut(s) 1150
AvaII GGWCC 2 cut(s) 607, 875
AxyI CCTNAGG 1 cut(s) 1051
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 57, 485
Bbv12I GWGCWC 1 cut(s) 1069
BccI CCATC 4 cut(s) 314, 647, 710, 749
BceAI ACGGC 1 cut(s) 884
BciT130I CCWGG 1 cut(s) 746
BciVI GTATCC 2 cut(s) 220, 452
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 741, 1212
BfmI CTRYAG 3 cut(s) 570, 1059, 1167
BfuI GTATCC 2 cut(s) 220, 452
BmcAI AGTACT 1 cut(s) 771
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 2 cut(s) 607, 875
BmeT110I CYCGRG 1 cut(s) 1150
BmgT120I GGNCC 2 cut(s) 607, 875
BmiI GGNNCC 4 cut(s) 252, 303, 609, 855
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 2 cut(s) 602, 666
BmtI GCTAGC 1 cut(s) 744
BpiI GAAGAC 2 cut(s) 57, 485
BplI GAGNNNNNCTC 2 cut(s) 756, 788
BpmI CTGGAG 2 cut(s) 639, 783
BpuEI CTTGAG 2 cut(s) 64, 938
BsaBI GATNNNNATC 1 cut(s) 933
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 459, 1105
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 617, 818, 1111
Bse1I ACTGG 3 cut(s) 252, 622, 893
Bse21I CCTNAGG 1 cut(s) 1051
Bse3DI GCAATG 3 cut(s) 332, 396, 1213
Bse8I GATNNNNATC 1 cut(s) 933
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 2 cut(s) 459, 1105
BseGI GGATG 3 cut(s) 655, 657, 1045
BseJI GATNNNNATC 1 cut(s) 933
BseLI CCNNNNNNNGG 4 cut(s) 321, 617, 818, 1111
BseMI GCAATG 3 cut(s) 332, 396, 1213
BseMII CTCAG 1 cut(s) 980
BseNI ACTGG 3 cut(s) 252, 622, 893
BseRI GAGGAG 1 cut(s) 638
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 2 cut(s) 486, 1107
BshFI GGCC 3 cut(s) 182, 339, 664
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 1069
BsiHKCI CYCGRG 1 cut(s) 1150
BsiSI CCGG 1 cut(s) 661
BslFI GGGAC 2 cut(s) 733, 819
BslI CCNNNNNNNGG 4 cut(s) 321, 617, 818, 1111
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 2 cut(s) 733, 819
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 3 cut(s) 182, 339, 664
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 1150
Bsp1286I GDGCHC 1 cut(s) 1069
Bsp143I GATC 2 cut(s) 853, 934
BspACI CCGC 7 cut(s) 179, 216, 484, 731, 858, 1105, 1107
BspANI GGCC 3 cut(s) 182, 339, 664
BspCNI CTCAG 1 cut(s) 979
BspFNI CGCG 2 cut(s) 486, 1107
BspLI GGNNCC 4 cut(s) 252, 303, 609, 855
BspMAI CTGCAG 1 cut(s) 1171
BspOI GCTAGC 1 cut(s) 744
BspPI GGATC 2 cut(s) 848, 861
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 3 cut(s) 332, 396, 1213
BsrI ACTGG 3 cut(s) 252, 622, 893
BssECI CCNNGG 2 cut(s) 459, 1105
BssMI GATC 2 cut(s) 853, 934
BssNAI GTATAC 1 cut(s) 976
BssT1I CCWWGG 1 cut(s) 459
Bst1107I GTATAC 1 cut(s) 976
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 6 cut(s) 301, 316, 424, 491, 582, 980
Bst6I CTCTTC 2 cut(s) 257, 776
BstC8I GCNNGC 3 cut(s) 484, 702, 742
BstDEI CTNAG 2 cut(s) 966, 1051
BstDSI CCRYGG 1 cut(s) 1105
BstF5I GGATG 3 cut(s) 655, 657, 1045
BstFNI CGCG 2 cut(s) 486, 1107
BstKTI GATC 2 cut(s) 856, 937
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 853, 934
BstMWI GCNNNNNNNGC 4 cut(s) 101, 359, 737, 1064
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 2 cut(s) 635, 1221
BstSCI CCNGG 1 cut(s) 744
BstSFI CTRYAG 3 cut(s) 570, 1059, 1167
BstUI CGCG 2 cut(s) 486, 1107
BstV2I GAAGAC 2 cut(s) 57, 485
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
BstZ17I GTATAC 1 cut(s) 976
Bsu36I CCTNAGG 1 cut(s) 1051
BsuI GTATCC 2 cut(s) 220, 452
BsuRI GGCC 3 cut(s) 182, 339, 664
BtgI CCRYGG 1 cut(s) 1105
BtsCI GGATG 3 cut(s) 655, 657, 1045
Cac8I GCNNGC 3 cut(s) 484, 702, 742
CaiI CAGNNNCTG 2 cut(s) 353, 884
Cfr13I GGNCC 2 cut(s) 607, 875
Cfr42I CCGCGG 1 cut(s) 1108
Csp6I GTAC 1 cut(s) 770
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviAII CATG 7 cut(s) 83, 418, 632, 676, 865, 1138, 1218
CviQI GTAC 1 cut(s) 770
DdeI CTNAG 2 cut(s) 966, 1051
DpnI GATC 2 cut(s) 855, 936
DpnII GATC 2 cut(s) 853, 934
DraI TTTAAA 1 cut(s) 709
EaeI YGGCCR 1 cut(s) 662
Eam1104I CTCTTC 2 cut(s) 257, 776
EarI CTCTTC 2 cut(s) 257, 776
Eco130I CCWWGG 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 607, 875
Eco57I CTGAAG 2 cut(s) 326, 486
Eco81I CCTNAGG 1 cut(s) 1051
Eco88I CYCGRG 1 cut(s) 1150
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 7 cut(s) 86, 421, 635, 679, 868, 1141, 1221
FaqI GGGAC 2 cut(s) 733, 819
FatI CATG 7 cut(s) 82, 417, 631, 675, 864, 1137, 1217
FauI CCCGC 3 cut(s) 491, 724, 865
FblI GTMKAC 2 cut(s) 448, 975
FokI GGATG 3 cut(s) 644, 662, 1032
FspBI CTAG 2 cut(s) 741, 1212
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 639, 783
HaeIII GGCC 3 cut(s) 182, 339, 664
HapII CCGG 1 cut(s) 661
Hin1II CATG 7 cut(s) 86, 421, 635, 679, 868, 1141, 1221
HincII GTYRAC 2 cut(s) 319, 1015
HindII GTYRAC 2 cut(s) 319, 1015
HinfI GANTC 4 cut(s) 86, 279, 1001, 1187
HpaII CCGG 1 cut(s) 661
HphI GGTGA 3 cut(s) 29, 760, 1196
Hpy166II GTNNAC 5 cut(s) 319, 449, 607, 976, 1015
Hpy188I TCNGA 6 cut(s) 311, 517, 715, 801, 984, 1006
Hpy188III TCNNGA 3 cut(s) 775, 829, 917
Hpy8I GTNNAC 5 cut(s) 319, 449, 607, 976, 1015
HpyAV CCTTC 2 cut(s) 350, 796
HpyCH4III ACNGT 6 cut(s) 301, 316, 424, 491, 582, 980
HpyCH4IV ACGT 1 cut(s) 1017
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 359, 737, 1064
HpyF3I CTNAG 2 cut(s) 966, 1051
HpySE526I ACGT 1 cut(s) 1017
Hsp92II CATG 7 cut(s) 86, 421, 635, 679, 868, 1141, 1221
KspI CCGCGG 1 cut(s) 1108
Kzo9I GATC 2 cut(s) 853, 934
LmnI GCTCC 1 cut(s) 764
LweI GCATC 2 cut(s) 602, 666
MaeI CTAG 2 cut(s) 741, 1212
MaeII ACGT 1 cut(s) 1017
MaeIII GTNAC 4 cut(s) 508, 541, 634, 1184
MalI GATC 2 cut(s) 855, 936
MboI GATC 2 cut(s) 853, 934
MboII GAAGA 7 cut(s) 48, 57, 274, 485, 488, 793, 997
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 1 cut(s) 1069
MluCI AATT 5 cut(s) 52, 639, 692, 888, 989
MlyI GAGTC 2 cut(s) 288, 1181
MseI TTAA 4 cut(s) 15, 222, 453, 708
MspA1I CMGCKG 5 cut(s) 119, 149, 860, 881, 1107
MspI CCGG 1 cut(s) 661
MspR9I CCNGG 1 cut(s) 746
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 1 cut(s) 746
MvnI CGCG 2 cut(s) 486, 1107
MwoI GCNNNNNNNGC 4 cut(s) 101, 359, 737, 1064
NdeII GATC 2 cut(s) 853, 934
NheI GCTAGC 1 cut(s) 740
NlaIII CATG 7 cut(s) 86, 421, 635, 679, 868, 1141, 1221
NlaIV GGNNCC 4 cut(s) 252, 303, 609, 855
NmuCI GTSAC 1 cut(s) 1184
NspI RCATGY 2 cut(s) 635, 1221
PctI GAATGC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 86, 1001
PflMI CCANNNNNTGG 1 cut(s) 617
PleI GAGTC 2 cut(s) 287, 1181
PpsI GAGTC 2 cut(s) 287, 1181
Psp6I CCWGG 1 cut(s) 744
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 4 cut(s) 252, 303, 609, 855
PspPI GGNCC 2 cut(s) 607, 875
PsrI GAACNNNNNNTAC 2 cut(s) 285, 317
PstI CTGCAG 1 cut(s) 1171
PstNI CAGNNNCTG 2 cut(s) 353, 884
PsuI RGATCY 1 cut(s) 853
PvuII CAGCTG 3 cut(s) 119, 149, 881
RsaI GTAC 1 cut(s) 771
RsaNI GTAC 1 cut(s) 770
SacII CCGCGG 1 cut(s) 1108
SaqAI TTAA 4 cut(s) 15, 222, 453, 708
Sau3AI GATC 2 cut(s) 853, 934
Sau96I GGNCC 2 cut(s) 607, 875
ScaI AGTACT 1 cut(s) 771
SchI GAGTC 2 cut(s) 288, 1181
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 1 cut(s) 1069
SfaNI GCATC 2 cut(s) 602, 666
SfcI CTRYAG 3 cut(s) 570, 1059, 1167
Sfr303I CCGCGG 1 cut(s) 1108
SgrBI CCGCGG 1 cut(s) 1108
SinI GGWCC 2 cut(s) 607, 875
SmiI ATTTAAAT 1 cut(s) 709
SmlI CTYRAG 2 cut(s) 43, 917
SmoI CTYRAG 2 cut(s) 43, 917
Sse9I AATT 5 cut(s) 52, 639, 692, 888, 989
SsiI CCGC 7 cut(s) 179, 216, 484, 731, 858, 1105, 1107
SspMI CTAG 2 cut(s) 741, 1212
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 1 cut(s) 459
SwaI ATTTAAAT 1 cut(s) 709
TaaI ACNGT 6 cut(s) 301, 316, 424, 491, 582, 980
TaiI ACGT 1 cut(s) 1020
TaqI TCGA 1 cut(s) 277
TasI AATT 5 cut(s) 52, 639, 692, 888, 989
TatI WGTACW 1 cut(s) 769
TauI GCSGC 4 cut(s) 182, 219, 1107, 1110
TfiI GAWTC 2 cut(s) 86, 1001
Tru1I TTAA 4 cut(s) 15, 222, 453, 708
Tru9I TTAA 4 cut(s) 15, 222, 453, 708
TseFI GTSAC 1 cut(s) 1184
Tsp45I GTSAC 1 cut(s) 1184
TspDTI ATGAA 6 cut(s) 99, 321, 358, 591, 794, 1112
TspGWI ACGGA 1 cut(s) 434
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 2 cut(s) 607, 875
XceI RCATGY 2 cut(s) 635, 1221
XcmI CCANNNNNNNNNTGG 1 cut(s) 752
XmiI GTMKAC 2 cut(s) 448, 975
XspI CTAG 2 cut(s) 741, 1212
ZrmI AGTACT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.