Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012187

Physical Location & Seq

Genomic Coordinates Reverse (-)

18380322 .. 18380999

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22412.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATTCTCCAGCTCGAGCAAGAGGGCCTCGACATCTACTGCAAGAAGGTCGAGATGACCAGAAAGTACCAGGCCGAGTTGCACAGGTCCCTCGCCGACGGCCAAGCTCAAATCGCCGCCATCGCCTCCGCTCTCGGCGAAGCCACTTCCTTTTCCTGGGCAAGAGGAACTCTCCGGGACCAGATTTCTGCTGTCAATGTTTTGGAGGAATTGAGCTTGAAGAAGCAAGAGAGGGTCAAGGACTTTTCGGTCACTCAGTCGCAGATTGCCAGGATCTCGTCGGAGATAGCGGGCAACGGTGTGGCTGGGAATGCCGGTGAGTATGCCGGAGTGGATGAGACGGATTTGACTCTGAAGAGGTTGGGAGAGCTTAAGACTATACTTGGAGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0005938 GO:0009506 GO:0009524 GO:0015630 GO:0030054 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

132

Amino Acids

14.24

Weight (kDa)

5.22

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38720
fragaria_vesca	FvH4_2g22412 FvH4_7g04100 FvH4_7g04100
malus_domestica	MD02G1275300.v1.1 MD07G1043200.v1.1
prunus_persica	Prupe.2G045700_v2.0.a1
pyrus_communis	pycom07g03050
rosa_chinensis	RchiOBHm_Chr1g0327971
rosa_laevigata	RLG00000029953
rosa_multiflora	Rmu_sc0000675.1_g000047 Rmu_ssc0000467.1_g000036
rosa_roxburghii	Rroxscaffold_4G00322110
rosa_rugosa	Rorug01G0072700
rosa_samantha	Rh1AG088700 Rh1BG071200 Rh1CG086800 Rh1DG093400
rosa_wichuraiana	Rw1G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	394
AasI	GACNNNNNNGTC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	131
AciI	CCGC	3 cut(s)	117, 129, 290
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	3 cut(s)	69, 155, 269
AluBI	AGCT	4 cut(s)	13, 107, 216, 370
AluI	AGCT	4 cut(s)	13, 107, 216, 370
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	3 cut(s)	25, 72, 100
AspS9I	GGNCC	3 cut(s)	25, 87, 178
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	87, 178
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	3 cut(s)	71, 157, 271
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	332
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	4 cut(s)	71, 157, 176, 271
Bme18I	GGWCC	2 cut(s)	87, 178
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	3 cut(s)	25, 87, 178
BmiI	GGNNCC	2 cut(s)	89, 179
BmrFI	CCNGG	4 cut(s)	71, 157, 176, 271
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BpuMI	CCSGG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	314
BseBI	CCWGG	3 cut(s)	71, 157, 271
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	269
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	3 cut(s)	27, 74, 102
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	175, 315, 327
BslFI	GGGAC	2 cut(s)	73, 191
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	73, 191
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	27, 74, 102
BsoBI	CYCGRG	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	117, 129, 290
BspANI	GGCC	3 cut(s)	27, 74, 102
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	89, 179
BspPI	GGATC	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	273
Bst2UI	CCWGG	3 cut(s)	71, 157, 271
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 311
BstNI	CCWGG	3 cut(s)	71, 157, 271
BstSCI	CCNGG	4 cut(s)	69, 155, 174, 269
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	27, 74, 102
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	25, 87, 178
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	9 cut(s)	13, 27, 74, 102, 107, 143, 216, 305, 370
CviKI_1	RGCY	9 cut(s)	13, 27, 74, 102, 107, 143, 216, 305, 370
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	87, 178
Eco57I	CTGAAG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	14
EcoO109I	RGGNCCY	2 cut(s)	25, 87
EcoRII	CCWGG	3 cut(s)	69, 155, 269
Esp3I	CGTCTC	1 cut(s)	332
FaiI	YATR	3 cut(s)	324, 380, 394
FaqI	GGGAC	2 cut(s)	73, 191
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	27, 74, 102
HapII	CCGG	3 cut(s)	175, 315, 327
HinfI	GANTC	2 cut(s)	4, 349
HpaII	CCGG	3 cut(s)	175, 315, 327
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	283, 354
Hpy188III	TCNNGA	1 cut(s)	52
Hpy99I	CGWCG	2 cut(s)	101, 283
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	42, 82
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 311
HpyF3I	CTNAG	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	275
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	1 cut(s)	273
MboII	GAAGA	2 cut(s)	232, 367
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	8 cut(s)	16, 38, 101, 136, 158, 199, 225, 351
MseI	TTAA	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	3 cut(s)	175, 315, 327
MspR9I	CCNGG	4 cut(s)	71, 157, 176, 271
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	3 cut(s)	71, 157, 271
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 311
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	273
NlaIV	GGNNCC	2 cut(s)	89, 179
NmeAIII	GCCGAG	2 cut(s)	100, 114
NmuCI	GTSAC	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	14
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PpuMI	RGGWCCY	1 cut(s)	87
PsiI	TTATAA	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	3 cut(s)	69, 155, 269
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	69, 155, 269
PspN4I	GGNNCC	2 cut(s)	89, 179
PspPI	GGNCC	3 cut(s)	25, 87, 178
PspPPI	RGGWCCY	1 cut(s)	87
PspXI	VCTCGAGB	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	3 cut(s)	25, 87, 178
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	4 cut(s)	71, 157, 176, 271
SetI	ASST	7 cut(s)	15, 51, 89, 109, 218, 362, 372
Sfr274I	CTCGAG	1 cut(s)	14
SinI	GGWCC	2 cut(s)	87, 178
SlaI	CTCGAG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	14, 371
SmoI	CTYRAG	2 cut(s)	14, 371
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	3 cut(s)	117, 129, 290
StyD4I	CCNGG	4 cut(s)	69, 155, 174, 269
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	15, 30, 51
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	1 cut(s)	209
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	87, 178
XhoI	CTCGAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.