RchiOBHm_Chr1g0327971

65-kDa microtubule-associated protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
17015013 .. 17021341
6329 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55745

Sequence Viewer

Length: 1704 bp
ATGTCGGCGGTGCCGCCGCCCGTTTCTCCCTCCCGCACCACCTGCGCTTCTCTCCTCCATGAACTACAGATCATTTGGGACGAAATTGGGGAGAGTGACAGTGAGAGGGACACCATGCTTCTCCAACTGGAGCAAGAATGCCTCGACATCTATCGGAAGAAGGTGGAAATGACGAGAAAGTACAGGGCTGATTTGCACAAGTCCTTAGCCGACGGCCAAGCTCAAATCGCCGCCATCGCCTCCGCTCTCGGAGAACCTAATTCGTTTCCAAGGGCAAGAGGGACCCTCAGGGACCAGATATCCGCCGTGAAGCCTGTTTTGGACGAACTGAGCTTGAAGAAGCAGGAAAGGGTGAGGGACTTTTCGGTAATTCAAACACAGATTGCGAGGATTTCGTCTGAAATAGCCGGGAACGGCCTGGCTAAGAATGCCGGTGAGGATGCCGGAGTGGAGGAGCGTGATTTGACTGTGAAGAGGTTGGGAGAGCTTAAGTCCCACCTTGACGAACTTCACAAAGAAAAGGCTTTACGTTTACAGAAGGTCAATAGTCATGTCAATACCATCCATGACCTCTCAGTTGTAATGTCCATTGATTTCTTTAGGACACTCGAAGAAGTCCACCCAAGCCTGAGTGATCAGTCCGCCGCTCATTCCAAGAGCATCAGCAATGACACTCTTGCTAGATTGACCGCACTGACCAACTCGCTGAAGCAAGAGAAACAGCAGAGACTGCAAAAGCTACAAGAGCTTGGAAGCAAGCTGATAGAAGTATGGAATCTCATGGAGACACCAACTGAGGAACGGAACAAATTTGACCATGTTACACGCTTAATTTCTTCCTCAGTTGATGAGCTGTCAAGGCATGGATGCCTTTCTCTAGATGTCATTGAGCAGACTGAGGCTGCAGTCGAGCGGTTGAATGTTTTGAAAGCCAGCAAGATGAAGGAGCTGGTCTTTAAGAGGCAAAATGAGCTCGAAGAAATTTATAGAGGAGTCCACATGGATGTAGATAGTGATGGAGCTAGACAGATTCTCAGCAGCCTCATAGATTCTGGTAATGTTAATTTGTCTGATCTGCTTTCAAGCATGGATGATCAGATTGTAAAGGCAAAAGAGCAAGCTTTAAGCAGAAAGGATATTTTGGATAAGGTAGAGAAATGCAAATTTGCATTTGAGGAGGATAAGTGGCTTGATGAGTATGAAAAGGATGAAAATCGATATAGTGCAGGAAGAGGAGCACACAAAAATTTGAAGCGTGCTGAGAAAGCCCGGATTTTGGTTGGAAAAATACCATCTATCATTGAAAGTCTGACTGCCAGAGTTAAAGCATGGGAGAGCGAGAAAGGAGTCCCTTTCTTATACGACAAGGTTCCCCTTTTACATATCATGGAGGAGTACGCTGCACAACGGCAGGAGAGAGAGGAGGAAAAACGTAAATCTCGGGAGCAAAAACGTCTGCAAGAACAACATGCGACCGAACAGGAGGCACTATTTGGTTCAAGGCCCTCTACAAAGAAGCCATTGGGACAAAGCACCAATGCCAATACCATGATTGGGACCCCAATTAGTCGTCGTACAAGTACCCCTTCGGGCCGTCATGGAGTGTCAGCTGCAAAAGAACGCAGAGAAAGTGGGAGGGCCAACATAACAACTGTTAACTATGTTGCTCTTCCAAAGGATGATTCTGTTGCTCGGAGAAATTGA

Protein Analysis

567

Amino Acids

64.01

Weight (kDa)

6.98

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP65_ASE1 PF03999 17 - 507 4.2e-73 Microtubule associated protein (MAP65/ASE1 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012187)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 10
AccBSI CCGCTC 3 cut(s) 245, 647, 913
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 4 cut(s) 809, 981, 1163, 1246
AcuI CTGAAG 1 cut(s) 728
AfaI GTAC 4 cut(s) 182, 1397, 1576, 1582
AfiI CCNNNNNNNGG 2 cut(s) 1276, 1554
AflII CTTAAG 1 cut(s) 488
AgsI TTSAA 8 cut(s) 337, 374, 919, 928, 1083, 1252, 1304, 1500
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 4 cut(s) 302, 334, 1666, 1698
Alw21I GWGCWC 2 cut(s) 975, 1240
Alw26I GTCTC 2 cut(s) 721, 779
AlwNI CAGNNNCTG 1 cut(s) 730
Ama87I CYCGRG 1 cut(s) 1440
AoxI GGCC 5 cut(s) 214, 415, 1502, 1591, 1638
ApeKI GCWGC 4 cut(s) 902, 1038, 1400, 1610
ApoI RAATTY 4 cut(s) 809, 981, 1163, 1246
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 6 cut(s) 282, 292, 1503, 1557, 1591, 1638
AsuC2I CCSGG 2 cut(s) 409, 1270
AsuHPI GGTGA 2 cut(s) 364, 446
AvaI CYCGRG 1 cut(s) 1440
AvaII GGWCC 3 cut(s) 282, 292, 1557
AxyI CCTNAGG 1 cut(s) 287
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 975
Bbv12I GWGCWC 2 cut(s) 975, 1240
BbvI GCAGC 4 cut(s) 889, 1050, 1387, 1597
BccI CCATC 4 cut(s) 242, 569, 1010, 1300
BceAI ACGGC 5 cut(s) 229, 290, 430, 1424, 1578
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 2 cut(s) 634, 1093
BcnI CCSGG 2 cut(s) 409, 1270
BcoDI GTCTC 2 cut(s) 721, 779
BfaI CTAG 3 cut(s) 681, 878, 1023
BfmI CTRYAG 2 cut(s) 65, 903
BfrI CTTAAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 8 cut(s) 14, 17, 231, 645, 903, 1039, 1401, 1611
BlsI GCNGC 8 cut(s) 15, 18, 232, 646, 904, 1040, 1402, 1612
Bme1390I CCNGG 3 cut(s) 409, 419, 1270
Bme18I GGWCC 3 cut(s) 282, 292, 1557
BmeT110I CYCGRG 1 cut(s) 1440
BmgT120I GGNCC 6 cut(s) 282, 292, 1503, 1557, 1591, 1638
BmiI GGNNCC 7 cut(s) 12, 283, 284, 293, 1371, 1558, 1559
BmrFI CCNGG 3 cut(s) 409, 419, 1270
BmsI GCATC 3 cut(s) 430, 669, 857
BplI GAGNNNNNCTC 2 cut(s) 270, 302
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 205
BpuMI CCSGG 2 cut(s) 409, 1270
Bsa29I ATCGAT 1 cut(s) 1216
BsaBI GATNNNNATC 1 cut(s) 1212
BsaJI CCNNGG 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 1169, 1199
Bsc4I CCNNNNNNNGG 2 cut(s) 1276, 1554
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 673
Bse8I GATNNNNATC 1 cut(s) 1212
BseBI CCWGG 1 cut(s) 419
BseCI ATCGAT 1 cut(s) 1216
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 7 cut(s) 445, 561, 872, 1009, 1096, 1213, 1684
BseJI GATNNNNATC 1 cut(s) 1212
BseLI CCNNNNNNNGG 2 cut(s) 1276, 1554
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 9 cut(s) 301, 320, 588, 620, 786, 855, 888, 1048, 1251
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 7 cut(s) 44, 467, 1005, 1190, 1248, 1406, 1436
BseXI GCAGC 4 cut(s) 889, 1050, 1387, 1597
BsgI GTGCAG 2 cut(s) 1245, 1386
Bsh1285I CGRYCG 1 cut(s) 1476
BshFI GGCC 5 cut(s) 216, 417, 1504, 1593, 1640
BshNI GGYRCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 1216
BsiEI CGRYCG 1 cut(s) 1476
BsiHKAI GWGCWC 2 cut(s) 975, 1240
BsiHKCI CYCGRG 1 cut(s) 1440
BsiSI CCGG 4 cut(s) 408, 432, 444, 1270
BslFI GGGAC 9 cut(s) 92, 122, 295, 305, 371, 478, 1334, 1539, 1570
BslI CCNNNNNNNGG 2 cut(s) 1276, 1554
BsmAI GTCTC 2 cut(s) 721, 779
BsmFI GGGAC 9 cut(s) 92, 122, 295, 305, 371, 478, 1334, 1539, 1570
BsmI GAATGC 2 cut(s) 143, 433
BsnI GGCC 5 cut(s) 216, 417, 1504, 1593, 1640
BsoBI CYCGRG 1 cut(s) 1440
Bsp1286I GDGCHC 2 cut(s) 975, 1240
Bsp143I GATC 4 cut(s) 69, 634, 1072, 1093
BspANI GGCC 5 cut(s) 216, 417, 1504, 1593, 1640
BspCNI CTCAG 9 cut(s) 300, 321, 587, 621, 787, 854, 889, 1047, 1252
BspDI ATCGAT 1 cut(s) 1216
BspLI GGNNCC 7 cut(s) 12, 283, 284, 293, 1371, 1558, 1559
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 1674
BspT107I GGYRCC 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 488
BsrBI CCGCTC 3 cut(s) 245, 647, 913
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 4 cut(s) 69, 634, 1072, 1093
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 101, 469, 1654
Bst6I CTCTTC 3 cut(s) 467, 1225, 1674
BstAFI CTTAAG 1 cut(s) 488
BstAPI GCANNNNNTGC 2 cut(s) 42, 730
BstC8I GCNNGC 4 cut(s) 758, 934, 1119, 1257
BstF5I GGATG 7 cut(s) 445, 561, 872, 1009, 1096, 1213, 1684
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 72, 637, 1075, 1096
BstMAI GTCTC 2 cut(s) 721, 779
BstMBI GATC 4 cut(s) 69, 634, 1072, 1093
BstMCI CGRYCG 1 cut(s) 1476
BstMWI GCNNNNNNNGC 9 cut(s) 42, 227, 236, 428, 730, 745, 859, 970, 1265
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 1472
BstSCI CCNGG 3 cut(s) 407, 417, 1268
BstSFI CTRYAG 2 cut(s) 65, 903
BstV1I GCAGC 4 cut(s) 889, 1050, 1387, 1597
Bsu15I ATCGAT 1 cut(s) 1216
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 5 cut(s) 216, 417, 1504, 1593, 1640
BsuTUI ATCGAT 1 cut(s) 1216
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 7 cut(s) 445, 561, 872, 1009, 1096, 1213, 1684
BtsIMutI CAGTG 2 cut(s) 106, 692
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 4 cut(s) 758, 934, 1119, 1257
CaiI CAGNNNCTG 1 cut(s) 730
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 6 cut(s) 282, 292, 1503, 1557, 1591, 1638
ClaI ATCGAT 1 cut(s) 1216
Csp6I GTAC 4 cut(s) 181, 1396, 1575, 1581
CviQI GTAC 4 cut(s) 181, 1396, 1575, 1581
DpnI GATC 4 cut(s) 71, 636, 1074, 1095
DpnII GATC 4 cut(s) 69, 634, 1072, 1093
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 3 cut(s) 467, 1225, 1674
EarI CTCTTC 3 cut(s) 467, 1225, 1674
EciI GGCGGA 2 cut(s) 292, 631
Ecl136II GAGCTC 1 cut(s) 973
Eco130I CCWWGG 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 975
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 282, 292, 1557
Eco53kI GAGCTC 1 cut(s) 973
Eco57I CTGAAG 1 cut(s) 728
Eco81I CCTNAGG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 1440
EcoICRI GAGCTC 1 cut(s) 973
EcoO109I RGGNCCY 3 cut(s) 282, 1503, 1557
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 1 cut(s) 269
FalI AAGNNNNNCTT 2 cut(s) 1570, 1602
FaqI GGGAC 9 cut(s) 92, 122, 295, 305, 371, 478, 1334, 1539, 1570
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 2 cut(s) 634, 1093
Fnu4HI GCNGC 8 cut(s) 14, 17, 231, 645, 903, 1039, 1401, 1611
FokI GGATG 7 cut(s) 452, 548, 879, 1016, 1103, 1220, 1691
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 8 cut(s) 14, 17, 231, 645, 903, 1039, 1401, 1611
FspBI CTAG 3 cut(s) 681, 878, 1023
GlaI GCGC 1 cut(s) 46
GluI GCNGC 8 cut(s) 14, 17, 231, 645, 903, 1039, 1401, 1611
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 5 cut(s) 216, 417, 1504, 1593, 1640
HapII CCGG 4 cut(s) 408, 432, 444, 1270
HhaI GCGC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 1657
HindII GTYRAC 1 cut(s) 1657
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 6 cut(s) 775, 993, 1030, 1049, 1347, 1682
HpaI GTTAAC 1 cut(s) 1657
HpaII CCGG 4 cut(s) 408, 432, 444, 1270
HphI GGTGA 2 cut(s) 364, 446
Hpy166II GTNNAC 4 cut(s) 533, 619, 997, 1657
Hpy188I TCNGA 7 cut(s) 156, 251, 400, 1072, 1098, 1311, 1695
Hpy188III TCNNGA 2 cut(s) 878, 1442
Hpy8I GTNNAC 4 cut(s) 533, 619, 997, 1657
Hpy99I CGWCG 2 cut(s) 215, 1575
HpyAV CCTTC 4 cut(s) 154, 532, 937, 1596
HpyCH4III ACNGT 3 cut(s) 101, 469, 1654
HpyCH4IV ACGT 3 cut(s) 529, 1432, 1453
HpyCH4V TGCA 9 cut(s) 196, 733, 905, 1161, 1169, 1226, 1403, 1459, 1613
HpyF10VI GCNNNNNNNGC 9 cut(s) 42, 227, 236, 428, 730, 745, 859, 970, 1265
HpySE526I ACGT 3 cut(s) 529, 1432, 1453
HspAI GCGC 1 cut(s) 45
KflI GGGWCCC 2 cut(s) 282, 1557
Ksp22I TGATCA 2 cut(s) 634, 1093
KspAI GTTAAC 1 cut(s) 1657
Kzo9I GATC 4 cut(s) 69, 634, 1072, 1093
LguI GCTCTTC 1 cut(s) 1674
LmnI GCTCC 6 cut(s) 130, 454, 946, 1019, 1235, 1444
Lsp1109I GCAGC 4 cut(s) 889, 1050, 1387, 1597
LweI GCATC 3 cut(s) 430, 669, 857
MaeI CTAG 3 cut(s) 681, 878, 1023
MaeII ACGT 3 cut(s) 529, 1432, 1453
MaeIII GTNAC 2 cut(s) 95, 820
MalI GATC 4 cut(s) 71, 636, 1074, 1095
MbiI CCGCTC 3 cut(s) 245, 647, 913
MboI GATC 4 cut(s) 69, 634, 1072, 1093
MboII GAAGA 8 cut(s) 169, 349, 484, 623, 828, 989, 1242, 1661
MhlI GDGCHC 2 cut(s) 975, 1240
MlyI GAGTC 2 cut(s) 1002, 1356
MmeI TCCRAC 2 cut(s) 148, 1261
MseI TTAA 7 cut(s) 489, 830, 957, 1062, 1124, 1323, 1656
MslI CAYNNNNRTG 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 1610
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 4 cut(s) 408, 432, 444, 1270
MspR9I CCNGG 3 cut(s) 409, 419, 1270
Mva1269I GAATGC 2 cut(s) 143, 433
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 9 cut(s) 42, 227, 236, 428, 730, 745, 859, 970, 1265
NciI CCSGG 2 cut(s) 409, 1270
NdeII GATC 4 cut(s) 69, 634, 1072, 1093
NlaIV GGNNCC 7 cut(s) 12, 283, 284, 293, 1371, 1558, 1559
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 1472
PaqCI CACCTGC 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 1674
PctI GAATGC 2 cut(s) 143, 433
PfeI GAWTC 4 cut(s) 775, 1030, 1049, 1682
PkrI GCNGC 8 cut(s) 15, 18, 232, 646, 904, 1040, 1402, 1612
PleI GAGTC 2 cut(s) 1001, 1355
PpsI GAGTC 2 cut(s) 1001, 1355
PpuMI RGGWCCY 2 cut(s) 282, 1557
Psp124BI GAGCTC 1 cut(s) 975
Psp5II RGGWCCY 2 cut(s) 282, 1557
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 7 cut(s) 12, 283, 284, 293, 1371, 1558, 1559
PspPI GGNCC 6 cut(s) 282, 292, 1503, 1557, 1591, 1638
PspPPI RGGWCCY 2 cut(s) 282, 1557
PstI CTGCAG 1 cut(s) 907
PstNI CAGNNNCTG 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 1610
RsaI GTAC 4 cut(s) 182, 1397, 1576, 1582
RsaNI GTAC 4 cut(s) 181, 1396, 1575, 1581
RseI CAYNNNNRTG 1 cut(s) 1002
SacI GAGCTC 1 cut(s) 975
SapI GCTCTTC 1 cut(s) 1674
SaqAI TTAA 7 cut(s) 489, 830, 957, 1062, 1124, 1323, 1656
SatI GCNGC 8 cut(s) 14, 17, 231, 645, 903, 1039, 1401, 1611
Sau3AI GATC 4 cut(s) 69, 634, 1072, 1093
Sau96I GGNCC 6 cut(s) 282, 292, 1503, 1557, 1591, 1638
SchI GAGTC 2 cut(s) 1002, 1356
ScrFI CCNGG 3 cut(s) 409, 419, 1270
SduI GDGCHC 2 cut(s) 975, 1240
SfaNI GCATC 3 cut(s) 430, 669, 857
SfcI CTRYAG 2 cut(s) 65, 903
SinI GGWCC 3 cut(s) 282, 292, 1557
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SspMI CTAG 3 cut(s) 681, 878, 1023
SstI GAGCTC 1 cut(s) 975
StyD4I CCNGG 3 cut(s) 407, 417, 1268
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 3 cut(s) 101, 469, 1654
TaiI ACGT 3 cut(s) 532, 1435, 1456
TaqI TCGA 5 cut(s) 144, 609, 909, 975, 1216
TaqII GACCGA 1 cut(s) 1490
TatI WGTACW 1 cut(s) 180
TauI GCSGC 4 cut(s) 16, 19, 233, 647
TfiI GAWTC 4 cut(s) 775, 1030, 1049, 1682
Tru1I TTAA 7 cut(s) 489, 830, 957, 1062, 1124, 1323, 1656
Tru9I TTAA 7 cut(s) 489, 830, 957, 1062, 1124, 1323, 1656
TscAI CASTG 2 cut(s) 106, 699
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 4 cut(s) 902, 1038, 1400, 1610
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 75, 956, 1215, 1224
TspGWI ACGGA 1 cut(s) 817
TspRI CASTG 2 cut(s) 106, 699
Vha464I CTTAAG 1 cut(s) 488
VpaK11BI GGWCC 3 cut(s) 282, 292, 1557
XapI RAATTY 4 cut(s) 809, 981, 1163, 1246
XbaI TCTAGA 1 cut(s) 877
XceI RCATGY 1 cut(s) 1472
XspI CTAG 3 cut(s) 681, 878, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.