Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000467.1

Orthogroup ID

OG0012187

Physical Location & Seq

Genomic Coordinates Forward (+)

120669 .. 123155

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000467.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atgtcggcggtgccgccgcccgtttctccctcccgcaccacctgcgcttctctcctccatgaactacagatcatttgggacgaaattggggagagtgacagtgagagggacaccatgcttctccaactcgagcaagaatgcctcgacatctatcggaagaaggtggaaatgacgagaaagtacagggctgatttgcacaagtccttagccgacggccaggctcaaatcgccgccatcgcctccgctctcggagaacctaattcgtttccaagggcaagagggaccctcagggaccagatatccgccgtgaagcctgttttggacgaactgagcttgaagaggcaggaaagggtgagggacttttcggtaattcaaacacagattgcgaggatttcgtctgaaatagctgggaaaggcctggctaagaatgccggtgaggatgccggagtggatgagcgtgatttgactgtgaagaggttgggagagcttaagtcccaccttgacgaacttcacaaagaaaaggctttacgtttacagaaggtcaatagtcatgtcaataccatccatgacctctcagttgtaatgtccattgatttctttaggacactcgaagaagtccacccaagcttgagtgatcagtccgccgctcattccaagagcatcagcaatgacactcttgctagattgaccgcactgaccaactcgctgaagcaagagaaacagcagagactgcaaaagctacaagagcttggaagcaagctgatagaagtatggaatctcatggagacaccaactgaggaacggaacaaatttgaccatgttacacgcttaatttcttcctcagttgatgagctgtcaaggcatggatgcctttctctagatgtcattgagcagactgaggctgaagtcgagcggttgaatgttttgaaagccagcaagatgaaggagttggtctttaagaggcaaaatgagctcgaagaactttatagaggagtccacatggatgtagatagtgatggagctagacagattctcagcagcctcatagattctggtaatgttaacttgtctgatctgctttcaagcatggatgatcagattgtaaaggcaaaagagcaagctttaagcagaaaggatattttggataaggtagagaaatgcaaatttgcatttgaggaggacaagtggcttgatgagtatgaaaaggtaaaaatatttgagaaagtgttacaatttaatatttttagtttggtacatctatttgtttcctctgacttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0005938 GO:0009506 GO:0009524 GO:0015630 GO:0030054 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

426

Amino Acids

48.3

Weight (kDa)

5.53

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38720
fragaria_vesca	FvH4_2g22412 FvH4_7g04100 FvH4_7g04100
malus_domestica	MD02G1275300.v1.1 MD07G1043200.v1.1
prunus_persica	Prupe.2G045700_v2.0.a1
pyrus_communis	pycom07g03050
rosa_chinensis	RchiOBHm_Chr1g0327971
rosa_laevigata	RLG00000029953
rosa_multiflora	Rmu_sc0000675.1_g000047 Rmu_ssc0000467.1_g000036
rosa_roxburghii	Rroxscaffold_4G00322110
rosa_rugosa	Rorug01G0072700
rosa_samantha	Rh1AG088700 Rh1BG071200 Rh1CG086800 Rh1DG093400
rosa_wichuraiana	Rw1G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	10
AccBSI	CCGCTC	3 cut(s)	245, 647, 913
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	809, 1163
AcuI	CTGAAG	2 cut(s)	728, 924
AfaI	GTAC	2 cut(s)	182, 1254
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	337, 374, 919, 928, 1083
AjnI	CCWGG	2 cut(s)	216, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
Alw21I	GWGCWC	1 cut(s)	975
Alw26I	GTCTC	2 cut(s)	721, 779
AlwNI	CAGNNNCTG	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	214, 415
ApeKI	GCWGC	1 cut(s)	1038
ApoI	RAATTY	2 cut(s)	809, 1163
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	282, 292
AsuHPI	GGTGA	2 cut(s)	364, 446
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	282, 292
AxyI	CCTNAGG	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	975
Bbv12I	GWGCWC	1 cut(s)	975
BbvI	GCAGC	1 cut(s)	1050
BccI	CCATC	3 cut(s)	242, 569, 1010
BceAI	ACGGC	2 cut(s)	229, 290
BciT130I	CCWGG	2 cut(s)	218, 419
BclI	TGATCA	2 cut(s)	634, 1093
BcoDI	GTCTC	2 cut(s)	721, 779
BfaI	CTAG	3 cut(s)	681, 878, 1023
BfmI	CTRYAG	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	5 cut(s)	14, 17, 231, 645, 1039
BlsI	GCNGC	5 cut(s)	15, 18, 232, 646, 1040
Bme1390I	CCNGG	2 cut(s)	218, 419
Bme18I	GGWCC	2 cut(s)	282, 292
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	282, 292
BmiI	GGNNCC	4 cut(s)	12, 283, 284, 293
BmrFI	CCNGG	2 cut(s)	218, 419
BmsI	GCATC	3 cut(s)	430, 669, 857
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
Bpu10I	CCTNAGC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	1169, 1199
Bse118I	RCCGGY	1 cut(s)	431
Bse21I	CCTNAGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	673
BseBI	CCWGG	2 cut(s)	218, 419
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	6 cut(s)	445, 457, 561, 872, 1009, 1096
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	7 cut(s)	301, 320, 588, 786, 855, 888, 1048
BseRI	GAGGAG	3 cut(s)	44, 1005, 1190
BseXI	GCAGC	1 cut(s)	1050
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	2 cut(s)	216, 417
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	975
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	432, 444
BslFI	GGGAC	6 cut(s)	92, 122, 295, 305, 371, 478
BsmAI	GTCTC	2 cut(s)	721, 779
BsmFI	GGGAC	6 cut(s)	92, 122, 295, 305, 371, 478
BsmI	GAATGC	2 cut(s)	143, 433
BsnI	GGCC	2 cut(s)	216, 417
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp143I	GATC	4 cut(s)	69, 634, 1072, 1093
BspANI	GGCC	2 cut(s)	216, 417
BspCNI	CTCAG	7 cut(s)	300, 321, 587, 787, 854, 889, 1047
BspLI	GGNNCC	4 cut(s)	12, 283, 284, 293
BspMI	ACCTGC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	488
BsrBI	CCGCTC	3 cut(s)	245, 647, 913
BsrDI	GCAATG	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	4 cut(s)	69, 634, 1072, 1093
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	218, 419
Bst4CI	ACNGT	2 cut(s)	101, 469
Bst6I	CTCTTC	2 cut(s)	332, 467
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	2 cut(s)	42, 730
BstC8I	GCNNGC	3 cut(s)	758, 934, 1119
BstDEI	CTNAG	9 cut(s)	205, 287, 329, 423, 574, 795, 841, 897, 1034
BstF5I	GGATG	6 cut(s)	445, 457, 561, 872, 1009, 1096
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	72, 637, 1075, 1096
BstMAI	GTCTC	2 cut(s)	721, 779
BstMBI	GATC	4 cut(s)	69, 634, 1072, 1093
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 227, 236, 428, 730, 745, 859, 970
BstNI	CCWGG	2 cut(s)	218, 419
BstSCI	CCNGG	2 cut(s)	216, 417
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	1050
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	216, 417
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	6 cut(s)	445, 457, 561, 872, 1009, 1096
BtsIMutI	CAGTG	2 cut(s)	106, 692
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	758, 934, 1119
CaiI	CAGNNNCTG	1 cut(s)	730
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	282, 292
Csp6I	GTAC	2 cut(s)	181, 1253
CviAII	CATG	9 cut(s)	59, 115, 551, 566, 781, 818, 863, 1000, 1087
CviQI	GTAC	2 cut(s)	181, 1253
DdeI	CTNAG	9 cut(s)	205, 287, 329, 423, 574, 795, 841, 897, 1034
DpnI	GATC	4 cut(s)	71, 636, 1074, 1095
DpnII	GATC	4 cut(s)	69, 634, 1072, 1093
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	332, 467
EarI	CTCTTC	2 cut(s)	332, 467
EciI	GGCGGA	2 cut(s)	292, 631
Ecl136II	GAGCTC	1 cut(s)	973
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	975
Eco32I	GATATC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	282, 292
Eco53kI	GAGCTC	1 cut(s)	973
Eco57I	CTGAAG	2 cut(s)	728, 924
Eco81I	CCTNAGG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	973
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	216, 417
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	9 cut(s)	62, 118, 554, 569, 784, 821, 866, 1003, 1090
FaqI	GGGAC	6 cut(s)	92, 122, 295, 305, 371, 478
FatI	CATG	9 cut(s)	58, 114, 550, 565, 780, 817, 862, 999, 1086
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	2 cut(s)	634, 1093
Fnu4HI	GCNGC	5 cut(s)	14, 17, 231, 645, 1039
FokI	GGATG	6 cut(s)	452, 464, 548, 879, 1016, 1103
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	5 cut(s)	14, 17, 231, 645, 1039
FspBI	CTAG	3 cut(s)	681, 878, 1023
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	5 cut(s)	14, 17, 231, 645, 1039
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	216, 417
HapII	CCGG	2 cut(s)	432, 444
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	9 cut(s)	62, 118, 554, 569, 784, 821, 866, 1003, 1090
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HindIII	AAGCTT	2 cut(s)	625, 1119
HinfI	GANTC	4 cut(s)	775, 993, 1030, 1049
HpaI	GTTAAC	1 cut(s)	1063
HpaII	CCGG	2 cut(s)	432, 444
HphI	GGTGA	2 cut(s)	364, 446
Hpy166II	GTNNAC	4 cut(s)	533, 619, 997, 1063
Hpy188I	TCNGA	6 cut(s)	156, 251, 400, 1072, 1098, 1273
Hpy188III	TCNNGA	1 cut(s)	878
Hpy8I	GTNNAC	4 cut(s)	533, 619, 997, 1063
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	154, 532, 937
HpyCH4III	ACNGT	2 cut(s)	101, 469
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	4 cut(s)	196, 733, 1161, 1169
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 227, 236, 428, 730, 745, 859, 970
HpyF3I	CTNAG	9 cut(s)	205, 287, 329, 423, 574, 795, 841, 897, 1034
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	9 cut(s)	62, 118, 554, 569, 784, 821, 866, 1003, 1090
HspAI	GCGC	1 cut(s)	45
KflI	GGGWCCC	1 cut(s)	282
Ksp22I	TGATCA	2 cut(s)	634, 1093
KspAI	GTTAAC	1 cut(s)	1063
Kzo9I	GATC	4 cut(s)	69, 634, 1072, 1093
LmnI	GCTCC	1 cut(s)	1019
Lsp1109I	GCAGC	1 cut(s)	1050
LweI	GCATC	3 cut(s)	430, 669, 857
MaeI	CTAG	3 cut(s)	681, 878, 1023
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	3 cut(s)	95, 820, 1227
MalI	GATC	4 cut(s)	71, 636, 1074, 1095
MbiI	CCGCTC	3 cut(s)	245, 647, 913
MboI	GATC	4 cut(s)	69, 634, 1072, 1093
MboII	GAAGA	6 cut(s)	169, 349, 484, 623, 828, 989
MhlI	GDGCHC	1 cut(s)	975
MluCI	AATT	7 cut(s)	84, 259, 369, 809, 831, 1163, 1232
MlyI	GAGTC	1 cut(s)	1002
MmeI	TCCRAC	1 cut(s)	148
MseI	TTAA	6 cut(s)	489, 830, 957, 1062, 1124, 1236
MslI	CAYNNNNRTG	1 cut(s)	1002
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	2 cut(s)	432, 444
MspR9I	CCNGG	2 cut(s)	218, 419
Mva1269I	GAATGC	2 cut(s)	143, 433
MvaI	CCWGG	2 cut(s)	218, 419
MwoI	GCNNNNNNNGC	8 cut(s)	42, 227, 236, 428, 730, 745, 859, 970
NdeII	GATC	4 cut(s)	69, 634, 1072, 1093
NlaIII	CATG	9 cut(s)	62, 118, 554, 569, 784, 821, 866, 1003, 1090
NlaIV	GGNNCC	4 cut(s)	12, 283, 284, 293
NmuCI	GTSAC	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	417
PctI	GAATGC	2 cut(s)	143, 433
PfeI	GAWTC	3 cut(s)	775, 1030, 1049
PkrI	GCNGC	5 cut(s)	15, 18, 232, 646, 1040
PleI	GAGTC	1 cut(s)	1001
PpsI	GAGTC	1 cut(s)	1001
PpuMI	RGGWCCY	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	975
Psp5II	RGGWCCY	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	216, 417
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	216, 417
PspN4I	GGNNCC	4 cut(s)	12, 283, 284, 293
PspPI	GGNCC	2 cut(s)	282, 292
PspPPI	RGGWCCY	1 cut(s)	282
PspXI	VCTCGAGB	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	730
RsaI	GTAC	2 cut(s)	182, 1254
RsaNI	GTAC	2 cut(s)	181, 1253
RseI	CAYNNNNRTG	1 cut(s)	1002
SacI	GAGCTC	1 cut(s)	975
SaqAI	TTAA	6 cut(s)	489, 830, 957, 1062, 1124, 1236
SatI	GCNGC	5 cut(s)	14, 17, 231, 645, 1039
Sau3AI	GATC	4 cut(s)	69, 634, 1072, 1093
Sau96I	GGNCC	2 cut(s)	282, 292
SchI	GAGTC	1 cut(s)	1002
ScrFI	CCNGG	2 cut(s)	218, 419
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	3 cut(s)	430, 669, 857
SfcI	CTRYAG	1 cut(s)	65
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	282, 292
SlaI	CTCGAG	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SmlI	CTYRAG	3 cut(s)	128, 488, 628
SmoI	CTYRAG	3 cut(s)	128, 488, 628
Sse9I	AATT	7 cut(s)	84, 259, 369, 809, 831, 1163, 1232
SseBI	AGGCCT	1 cut(s)	417
SspI	AATATT	2 cut(s)	1215, 1240
SspMI	CTAG	3 cut(s)	681, 878, 1023
SstI	GAGCTC	1 cut(s)	975
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	216, 417
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	101, 469
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	5 cut(s)	129, 144, 609, 909, 975
TasI	AATT	7 cut(s)	84, 259, 369, 809, 831, 1163, 1232
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	4 cut(s)	16, 19, 233, 647
TfiI	GAWTC	3 cut(s)	775, 1030, 1049
Tru1I	TTAA	6 cut(s)	489, 830, 957, 1062, 1124, 1236
Tru9I	TTAA	6 cut(s)	489, 830, 957, 1062, 1124, 1236
TscAI	CASTG	2 cut(s)	106, 699
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	1038
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	75, 956, 1215
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	2 cut(s)	106, 699
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	282, 292
XapI	RAATTY	2 cut(s)	809, 1163
XbaI	TCTAGA	1 cut(s)	877
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	3 cut(s)	681, 878, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.