Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012187

Physical Location & Seq

Genomic Coordinates Forward (+)

32949058 .. 32949472

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1275300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCTTCTACAGCTTGAGCAAGAGTGTCTTGATATTTACCGGAAGAAGATCGAAATGACCAGGAAGCACAGGGCCGATTTGCACCGGTACTTACCCGACGGTCAAACCCAGATCAAGGCCATTGTTTCGGCCTTTGGGAAGTTGACTCCTTTTCTAGCGAAAGAGGGACCCTCGAAGACCAATTGTCTGCCCTCAAACCTGTTCTGGACGAATTGGAATCCTGTTCCCCTGTTACGGAGGAGTACACTGCACAACGACAGGAGAGTGAGGAGGATAAGCGTAAATCTCGGGTATGCTTGGACTTGCTACTTCTACTCACGCGTTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0005938 GO:0009506 GO:0009524 GO:0015630 GO:0030054 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

110

Amino Acids

12.95

Weight (kDa)

10.15

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38720
fragaria_vesca	FvH4_2g22412 FvH4_7g04100 FvH4_7g04100
malus_domestica	MD02G1275300.v1.1 MD07G1043200.v1.1
prunus_persica	Prupe.2G045700_v2.0.a1
pyrus_communis	pycom07g03050
rosa_chinensis	RchiOBHm_Chr1g0327971
rosa_laevigata	RLG00000029953
rosa_multiflora	Rmu_sc0000675.1_g000047 Rmu_ssc0000467.1_g000036
rosa_roxburghii	Rroxscaffold_4G00322110
rosa_rugosa	Rorug01G0072700
rosa_samantha	Rh1AG088700 Rh1BG071200 Rh1CG086800 Rh1DG093400
rosa_wichuraiana	Rw1G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	89, 244
AfiI	CCNNNNNNNGG	2 cut(s)	115, 234
AflIII	ACRYGT	1 cut(s)	319
AgeI	ACCGGT	1 cut(s)	84
AhdI	GACNNNNNGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	72, 117, 129
AsiGI	ACCGGT	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	72, 167
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	72, 167
BmiI	GGNNCC	2 cut(s)	168, 169
BmrFI	CCNGG	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuEI	CTTGAG	1 cut(s)	35
BsaWI	WCCGGW	2 cut(s)	39, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 234
Bse118I	RCCGGY	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	115, 234
BseRI	GAGGAG	2 cut(s)	253, 283
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	74, 119, 131
BshTI	ACCGGT	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	40, 85
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	115, 234
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	74, 119, 131
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	48, 111
BspANI	GGCC	3 cut(s)	74, 119, 131
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	168, 169
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssMI	GATC	2 cut(s)	48, 111
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	2 cut(s)	51, 114
BstMBI	GATC	2 cut(s)	48, 111
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	74, 119, 131
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	72, 167
Csp6I	GTAC	2 cut(s)	88, 243
CspAI	ACCGGT	1 cut(s)	84
CviJI	RGCY	4 cut(s)	13, 74, 119, 131
CviKI_1	RGCY	4 cut(s)	13, 74, 119, 131
CviQI	GTAC	2 cut(s)	88, 243
DpnI	GATC	2 cut(s)	50, 113
DpnII	GATC	2 cut(s)	48, 111
DriI	GACNNNNNGTC	1 cut(s)	183
Eam1105I	GACNNNNNGTC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	59
FaiI	YATR	1 cut(s)	294
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	74, 119, 131
HapII	CCGG	2 cut(s)	40, 85
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	145, 217
HpaII	CCGG	2 cut(s)	40, 85
Hpy166II	GTNNAC	2 cut(s)	144, 245
Hpy188III	TCNNGA	2 cut(s)	29, 205
Hpy8I	GTNNAC	2 cut(s)	144, 245
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	82, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
KflI	GGGWCCC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	48, 111
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	50, 113
MboI	GATC	2 cut(s)	48, 111
MboII	GAAGA	3 cut(s)	55, 58, 187
MfeI	CAATTG	1 cut(s)	181
MluCI	AATT	2 cut(s)	181, 211
MluI	ACGCGT	1 cut(s)	319
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	6 cut(s)	157, 181, 202, 231, 261, 264
MspI	CCGG	2 cut(s)	40, 85
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	48, 111
NlaIV	GGNNCC	2 cut(s)	168, 169
PfeI	GAWTC	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	84
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	168, 169
PspPI	GGNCC	2 cut(s)	72, 167
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	89, 244
RsaNI	GTAC	2 cut(s)	88, 243
Sau3AI	GATC	2 cut(s)	48, 111
Sau96I	GGNCC	2 cut(s)	72, 167
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	2 cut(s)	15, 201
SfcI	CTRYAG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	181, 211
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	2 cut(s)	51, 173
TasI	AATT	2 cut(s)	181, 211
TatI	WGTACW	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	252
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	167
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.