Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012187

Physical Location & Seq

Genomic Coordinates Reverse (-)

11907701 .. 11908214

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTCCAATCCGCCATCCGGATCGCCGCCGCCTCCCCCTCCCTCTACGAGCGCCCCGTCCGACGCATCGCCGCCGACGTGGCCAAGAACCTCGACCGCGAGTTCTTGGATTCCAGTGGAATTCTCGAATACCGACCAAACATGGCGACGAATCTGAGCCGTCGATTCTCATCAACGATCGTAACGAAAGCCGAGCCTCTGGCTCGCTTAGCTGTCAACTCAGTGAGCCGGCTCTTGTCCTCCTCGACCGGGCAATCTCAACCGGAGCGCGAAAACGCGGAGGTGAAATACGACGGAAGCGCCAAACCGGACGACAGAAAGAGTGAAAAGCCAACTGAGGATGGTGAAGATGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGTCGAAAGGGCCCGAGCCGACCCTGTACGGCGATTGGGAAAAAAACGGTTGGTGCTCTGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0005938 GO:0009506 GO:0009524 GO:0015630 GO:0030054 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

151

Amino Acids

16.65

Weight (kDa)

4.93

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	1 - 33	3.6e-06	Domain of unknown function (DUF7792)
DUF1674	PF07896	116 - 151	7.3e-15	Protein of unknown function (DUF1674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38720
fragaria_vesca	FvH4_2g22412 FvH4_7g04100 FvH4_7g04100
malus_domestica	MD02G1275300.v1.1 MD07G1043200.v1.1
prunus_persica	Prupe.2G045700_v2.0.a1
pyrus_communis	pycom07g03050
rosa_chinensis	RchiOBHm_Chr1g0327971
rosa_laevigata	RLG00000029953
rosa_multiflora	Rmu_sc0000675.1_g000047 Rmu_ssc0000467.1_g000036
rosa_roxburghii	Rroxscaffold_4G00322110
rosa_rugosa	Rorug01G0072700
rosa_samantha	Rh1AG088700 Rh1BG071200 Rh1CG086800 Rh1DG093400
rosa_wichuraiana	Rw1G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	99, 270, 278
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	7 cut(s)	12, 27, 30, 72, 97, 278, 387
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	18, 249
AgsI	TTSAA	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	2 cut(s)	81, 398
ApaI	GGGCCC	1 cut(s)	402
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	3 cut(s)	54, 270, 302
AspS9I	GGNCC	2 cut(s)	398, 399
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	295, 356, 389
AvaI	CYCGRG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	446
BccI	CCATC	2 cut(s)	23, 335
BceAI	ACGGC	2 cut(s)	144, 433
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	365
BfoI	RGCGCY	2 cut(s)	55, 303
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	3 cut(s)	27, 30, 72
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	3 cut(s)	28, 31, 73
Bme1390I	CCNGG	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	398, 399
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	169
BsaWI	WCCGGW	3 cut(s)	18, 262, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 249
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	169
BseAI	TCCGGA	1 cut(s)	18
BseGI	GGATG	2 cut(s)	15, 346
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	18, 249
BseMII	CTCAG	3 cut(s)	146, 234, 327
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	402
Bsh1236I	CGCG	3 cut(s)	99, 270, 278
Bsh1285I	CGRYCG	3 cut(s)	97, 180, 249
BshFI	GGCC	2 cut(s)	83, 400
BsiEI	CGRYCG	3 cut(s)	97, 180, 249
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	5 cut(s)	19, 229, 249, 263, 308
BslI	CCNNNNNNNGG	2 cut(s)	18, 249
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	83, 400
BsoBI	CYCGRG	1 cut(s)	401
Bsp120I	GGGCCC	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	402, 446
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	21, 177, 381
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	7 cut(s)	12, 27, 30, 72, 97, 278, 387
BspANI	GGCC	2 cut(s)	83, 400
BspCNI	CTCAG	3 cut(s)	147, 233, 328
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	3 cut(s)	99, 270, 278
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	3 cut(s)	21, 177, 381
Bst4CI	ACNGT	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	205, 230
BstDEI	CTNAG	4 cut(s)	155, 208, 220, 336
BstF5I	GGATG	2 cut(s)	15, 346
BstFNI	CGCG	3 cut(s)	99, 270, 278
BstH2I	RGCGCY	2 cut(s)	55, 303
BstHHI	GCGC	3 cut(s)	54, 270, 302
BstKTI	GATC	3 cut(s)	24, 180, 384
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	21, 177, 381
BstMCI	CGRYCG	3 cut(s)	97, 180, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 209
BstSCI	CCNGG	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	3 cut(s)	99, 270, 278
BsuRI	GGCC	2 cut(s)	83, 400
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	15, 346
BtsIMutI	CAGTG	2 cut(s)	121, 228
Cac8I	GCNNGC	2 cut(s)	205, 230
CfoI	GCGC	3 cut(s)	54, 270, 302
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	398, 399
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	1 cut(s)	142
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	4 cut(s)	155, 208, 220, 336
DpnI	GATC	3 cut(s)	23, 179, 383
DpnII	GATC	3 cut(s)	21, 177, 381
EaeI	YGGCCR	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	1 cut(s)	145
FaiI	YATR	1 cut(s)	143
FatI	CATG	1 cut(s)	141
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	3 cut(s)	27, 30, 72
FokI	GGATG	2 cut(s)	2, 353
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	3 cut(s)	27, 30, 72
GlaI	GCGC	3 cut(s)	53, 269, 301
GluI	GCNGC	3 cut(s)	27, 30, 72
HaeII	RGCGCY	2 cut(s)	55, 303
HaeIII	GGCC	2 cut(s)	83, 400
HapII	CCGG	5 cut(s)	19, 229, 249, 263, 308
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	3 cut(s)	54, 270, 302
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	3 cut(s)	52, 268, 300
HinP1I	GCGC	3 cut(s)	52, 268, 300
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	110, 151, 165
HpaII	CCGG	5 cut(s)	19, 229, 249, 263, 308
HphI	GGTGA	3 cut(s)	295, 356, 389
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	62, 156, 448
Hpy188III	TCNNGA	2 cut(s)	19, 125
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	5 cut(s)	66, 80, 151, 165, 296
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 209
HpyF3I	CTNAG	4 cut(s)	155, 208, 220, 336
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	3 cut(s)	52, 268, 300
Kpn2I	TCCGGA	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	21, 177, 381
LmnI	GCTCC	2 cut(s)	9, 265
LpnPI	CCDG	8 cut(s)	32, 127, 185, 242, 262, 276, 321, 425
LweI	GCATC	1 cut(s)	75
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	23, 179, 383
MboI	GATC	3 cut(s)	21, 177, 381
MboII	GAAGA	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	402, 446
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	85, 336
MnlI	CCTC	9 cut(s)	43, 49, 53, 101, 207, 250, 253, 274, 331
Mox20I	TGGCCA	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	18
MroNI	GCCGGC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	454
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	5 cut(s)	19, 229, 249, 263, 308
MspR9I	CCNGG	1 cut(s)	250
MvnI	CGCG	3 cut(s)	99, 270, 278
MwoI	GCNNNNNNNGC	2 cut(s)	80, 209
NaeI	GCCGGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	21, 177, 381
NgoMIV	GCCGGC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 75, 182
PdiI	GCCGGC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	110, 151, 165
PkrI	GCNGC	3 cut(s)	28, 31, 73
Ple19I	CGATCG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	400
PspOMI	GGGCCC	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	398, 399
PvuI	CGATCG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	3 cut(s)	27, 30, 72
Sau3AI	GATC	3 cut(s)	21, 177, 381
Sau96I	GGNCC	2 cut(s)	398, 399
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	2 cut(s)	402, 446
SetI	ASST	4 cut(s)	81, 93, 214, 285
SfaNI	GCATC	1 cut(s)	75
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	7 cut(s)	12, 27, 30, 72, 97, 278, 387
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	5 cut(s)	93, 126, 163, 245, 392
TasI	AATT	1 cut(s)	120
TauI	GCSGC	3 cut(s)	29, 32, 74
TfiI	GAWTC	3 cut(s)	110, 151, 165
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	2 cut(s)	121, 228
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	121, 228
XapI	RAATTY	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.