FvH4_2g23140

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015144
Physical Location & Seq
Reverse (-)
18978552 .. 18979838
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23140.t1

Sequence Viewer

Length: 495 bp
ATGAAGAGGGCAATGCCATGGAGTGATGAGGAGGACGATTCCTCATCCGAAGAAGAGTCCCAACCATCACAAGTGAAATCAGGGAAGCCAAAGAAGCTTGATTTTGAAGCATTGAAGAAGCACGGTTACAGAGGAGGGCCGTCTATACTGAAGGTGCCTCCGCCGAAGGAGTCGGATAAGGACCAGGACTGGTCTTGGTCCACCGGAGTGGATCAGAAGGCGAAAAGTGGAGCTACCAAGGAGAAGGTGGTGGTGGAAGAAGAGAGCAAAGAAGAGCGAAGGAAGACGAGGGAGGCATTGGCAGCCGGGGAGGAGTTGCAGTATGCGCTGACCAGGAAGGAGAGGGAGAAGGAGAAGGAAAAGGAGAAGAAGACGTTTTCGCAGAAGGAGAAGAGGAAGAGGGATCTTGGTCAGGCCAGCAGGGGGAAGAACTATGTGGAAGAAGAGAAGAGGTTGCTCAGGGAGAATGGTGTCTACTCTGGCTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.88

Weight (kDa)

8.84

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 474
AciI CCGC 1 cut(s) 161
AclWI GGATC 2 cut(s) 219, 411
AcuI CTGAAG 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 2 cut(s) 107, 115
AjnI CCWGG 2 cut(s) 183, 332
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 2 cut(s) 97, 233
AluI AGCT 2 cut(s) 97, 233
AlwI GGATC 2 cut(s) 219, 411
AoxI GGCC 2 cut(s) 137, 414
ApeKI GCWGC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 3 cut(s) 137, 181, 198
AsuC2I CCSGG 1 cut(s) 307
AvaII GGWCC 2 cut(s) 181, 198
BanI GGYRCC 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BbsI GAAGAC 2 cut(s) 290, 377
BbvI GCAGC 1 cut(s) 314
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 185, 334
BcnI CCSGG 1 cut(s) 307
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 3 cut(s) 185, 307, 334
Bme18I GGWCC 2 cut(s) 181, 198
BmgT120I GGNCC 3 cut(s) 137, 181, 198
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 3 cut(s) 185, 307, 334
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 290, 377
Bpu10I CCTNAGC 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 307
BsaJI CCNNGG 3 cut(s) 17, 237, 306
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 185, 334
BseDI CCNNGG 3 cut(s) 17, 237, 306
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 472
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 3 cut(s) 44, 147, 326
BseXI GCAGC 1 cut(s) 314
BshFI GGCC 2 cut(s) 139, 416
BshNI GGYRCC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 204, 306
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 2 cut(s) 139, 416
Bsp143I GATC 2 cut(s) 211, 403
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 161
BspANI GGCC 2 cut(s) 139, 416
BspCNI CTCAG 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 2 cut(s) 219, 411
BspQI GCTCTTC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 17, 237, 306
BssMI GATC 2 cut(s) 211, 403
BssT1I CCWWGG 2 cut(s) 17, 237
Bst2UI CCWGG 2 cut(s) 185, 334
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 7 cut(s) 48, 255, 267, 386, 392, 438, 443
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 458, 492
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 214, 406
BstMBI GATC 2 cut(s) 211, 403
BstMWI GCNNNNNNNGC 3 cut(s) 94, 302, 325
BstNI CCWGG 2 cut(s) 185, 334
BstSCI CCNGG 3 cut(s) 183, 305, 332
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 2 cut(s) 290, 377
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 2 cut(s) 139, 416
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 418
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 3 cut(s) 137, 181, 198
CviAII CATG 1 cut(s) 18
CviJI RGCY 7 cut(s) 88, 97, 139, 233, 305, 416, 483
CviKI_1 RGCY 7 cut(s) 88, 97, 139, 233, 305, 416, 483
DdeI CTNAG 2 cut(s) 458, 492
DpnI GATC 2 cut(s) 213, 405
DpnII GATC 2 cut(s) 211, 403
Eam1104I CTCTTC 7 cut(s) 48, 255, 267, 386, 392, 438, 443
EarI CTCTTC 7 cut(s) 48, 255, 267, 386, 392, 438, 443
EciI GGCGGA 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 17, 237
Eco47I GGWCC 2 cut(s) 181, 198
Eco57I CTGAAG 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 183, 332
EcoT14I CCWWGG 2 cut(s) 17, 237
ErhI CCWWGG 2 cut(s) 17, 237
FaeI CATG 1 cut(s) 21
FaiI YATR 4 cut(s) 19, 146, 324, 435
FaqI GGGAC 1 cut(s) 43
FatI CATG 1 cut(s) 17
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 303
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 139, 416
HapII CCGG 2 cut(s) 204, 306
HhaI GCGC 1 cut(s) 328
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 3 cut(s) 38, 56, 170
HpaII CCGG 2 cut(s) 204, 306
Hpy166II GTNNAC 2 cut(s) 201, 475
Hpy188I TCNGA 3 cut(s) 49, 175, 216
Hpy8I GTNNAC 2 cut(s) 201, 475
HpyAV CCTTC 9 cut(s) 145, 160, 211, 238, 273, 331, 343, 349, 379
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 302, 325
HpyF3I CTNAG 2 cut(s) 458, 492
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 2 cut(s) 211, 403
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 478
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 213, 405
MboI GATC 2 cut(s) 211, 403
MflI RGATCY 1 cut(s) 403
MlyI GAGTC 2 cut(s) 65, 179
MmeI TCCRAC 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 2 cut(s) 204, 306
MspR9I CCNGG 3 cut(s) 185, 307, 334
MvaI CCWGG 2 cut(s) 185, 334
MwoI GCNNNNNNNGC 3 cut(s) 94, 302, 325
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 17
NdeII GATC 2 cut(s) 211, 403
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 2 cut(s) 64, 178
PpsI GAGTC 2 cut(s) 64, 178
Psp6I CCWGG 2 cut(s) 183, 332
PspGI CCWGG 2 cut(s) 183, 332
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 3 cut(s) 137, 181, 198
PsuI RGATCY 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 267
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 211, 403
Sau96I GGNCC 3 cut(s) 137, 181, 198
SchI GAGTC 2 cut(s) 65, 179
ScrFI CCNGG 3 cut(s) 185, 307, 334
SetI ASST 6 cut(s) 99, 156, 235, 249, 377, 455
SfaNI GCATC 1 cut(s) 478
SinI GGWCC 2 cut(s) 181, 198
SmiMI CAYNNNNRTG 1 cut(s) 206
SsiI CCGC 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 183, 305, 332
StyI CCWWGG 2 cut(s) 17, 237
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 377
TfiI GAWTC 1 cut(s) 38
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 181, 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.