pycom11g24860

UPF0690 protein C1orf52 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
27706604 .. 27707243
640 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24860.1

Sequence Viewer

Length: 510 bp
ATGAAGAGGGCAATTACATGGAGTGACGAGGAAGGAGATTCGGATTCCTCATCTGGGAAGTCATCAGATTCACCACCCTCCAAGAAAACAGCTTCACAAGTGAAATCTGGGAAGCCAAAGAGCAAAGTTGTGGACTTTGAGGCACTGAAGCAACATGGCTACAAGGGTGGGCCGTCTGTGCTGGGTGTGCCGCCACCGAAAGCGCCGGAGCAGGAGCCGAACTGGACTTGGTCTACCGGCAGGGAGGATGGTAAGGACGGCAAGCCCGGAACCAAGAAAACTGAGGAAGAAGAAGAATCTTATGAACAACGACAGAAGACGAGAGCTGCATTGGCCTCGGGAGAGAAGCTTGAAACTGCGCTGACCCGGAGCGATAAGCGAAACCTGTCGTTTTCGCAGAAGGAGAAGAGGAAGAGAGAGCTTGGGCAGGCAAGCAGGGGGAAGAACTACGTTGAAGAAGAGAAGAGGTTGCTGAGGGATAGCGGTGTTTACTCTGGTTTTGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.72

Weight (kDa)

9.24

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015144)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 233
AciI CCGC 2 cut(s) 191, 483
AcuI CTGAAG 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 2 cut(s) 353, 455
AluBI AGCT 4 cut(s) 92, 326, 349, 421
AluI AGCT 4 cut(s) 92, 326, 349, 421
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 2 cut(s) 170, 333
ApeKI GCWGC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 205, 361
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 2 cut(s) 267, 367
AsuHPI GGTGA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 157, 274
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BcnI CCSGG 2 cut(s) 267, 367
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 2 cut(s) 191, 327
BlsI GCNGC 2 cut(s) 192, 328
Bme1390I CCNGG 2 cut(s) 267, 367
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 216, 271
BmrFI CCNGG 2 cut(s) 267, 367
BpiI GAAGAC 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 267, 367
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 273, 464
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 181
BshFI GGCC 2 cut(s) 172, 335
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 4 cut(s) 206, 237, 267, 367
BslI CCNNNNNNNGG 1 cut(s) 54
BsnI GGCC 2 cut(s) 172, 335
BsoBI CYCGRG 1 cut(s) 337
BspACI CCGC 2 cut(s) 191, 483
BspANI GGCC 2 cut(s) 172, 335
BspCNI CTCAG 2 cut(s) 274, 465
BspLI GGNNCC 2 cut(s) 216, 271
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 336
Bst6I CTCTTC 4 cut(s) 401, 407, 453, 458
BstC8I GCNNGC 3 cut(s) 263, 429, 433
BstDEI CTNAG 3 cut(s) 282, 473, 507
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 2 cut(s) 205, 361
BstMWI GCNNNNNNNGC 3 cut(s) 178, 187, 332
BstSCI CCNGG 2 cut(s) 265, 365
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 323
BsuRI GGCC 2 cut(s) 172, 335
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 3 cut(s) 263, 429, 433
CfoI GCGC 2 cut(s) 205, 361
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 2 cut(s) 18, 155
DdeI CTNAG 3 cut(s) 282, 473, 507
Eam1104I CTCTTC 4 cut(s) 401, 407, 453, 458
EarI CTCTTC 4 cut(s) 401, 407, 453, 458
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 337
FaeI CATG 2 cut(s) 21, 158
FaiI YATR 3 cut(s) 19, 156, 303
FatI CATG 2 cut(s) 17, 154
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 191, 327
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 2 cut(s) 191, 327
GlaI GCGC 2 cut(s) 204, 360
GluI GCNGC 2 cut(s) 191, 327
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 2 cut(s) 172, 335
HapII CCGG 4 cut(s) 206, 237, 267, 367
HhaI GCGC 2 cut(s) 205, 361
Hin1II CATG 2 cut(s) 21, 158
Hin6I GCGC 2 cut(s) 203, 359
HinP1I GCGC 2 cut(s) 203, 359
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 38, 44, 68, 296
HpaII CCGG 4 cut(s) 206, 237, 267, 367
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 3 cut(s) 133, 234, 490
Hpy188I TCNGA 2 cut(s) 43, 67
Hpy188III TCNNGA 1 cut(s) 339
Hpy8I GTNNAC 3 cut(s) 133, 234, 490
HpyAV CCTTC 2 cut(s) 26, 394
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 187, 332
HpyF3I CTNAG 3 cut(s) 282, 473, 507
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 2 cut(s) 21, 158
HspAI GCGC 2 cut(s) 203, 359
LmnI GCTCC 3 cut(s) 208, 214, 369
Lsp1109I GCAGC 1 cut(s) 313
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 1 cut(s) 23
MluCI AATT 1 cut(s) 12
MspI CCGG 4 cut(s) 206, 237, 267, 367
MspR9I CCNGG 2 cut(s) 267, 367
MwoI GCNNNNNNNGC 3 cut(s) 178, 187, 332
NciI CCSGG 2 cut(s) 267, 367
NlaIII CATG 2 cut(s) 21, 158
NlaIV GGNNCC 2 cut(s) 216, 271
NmuCI GTSAC 1 cut(s) 23
PfeI GAWTC 4 cut(s) 38, 44, 68, 296
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 2 cut(s) 192, 328
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 216, 271
PspPI GGNCC 1 cut(s) 170
PsyI GACNNNGTC 1 cut(s) 229
SatI GCNGC 2 cut(s) 191, 327
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 267, 367
SetI ASST 7 cut(s) 94, 328, 351, 387, 423, 453, 470
Sse9I AATT 1 cut(s) 12
SsiI CCGC 2 cut(s) 191, 483
StyD4I CCNGG 2 cut(s) 265, 365
TaiI ACGT 1 cut(s) 453
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 4 cut(s) 38, 44, 68, 296
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 17, 318
TspRI CASTG 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.