Rorug06G0212300

UPF0690 protein C1orf52 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
33773581 .. 33776037
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0212300.1

Sequence Viewer

Length: 2457 bp
ATGACCTCTGAGTGTATGAATCTATTGGATAGGCAGTGTGCGGGAGGGAATATTGCTCTTAAGATTGATATTAGCAAGGCATTTGACACATTAGATTGGGAATTTTTAACTCGAGTTCTACGATCTTTTGGTTTTTGCTCTACTTTTATAAATTGGATTCAAAGTGTTCTGCAATCAGCTAGACTGTCTGTGTCAGTTAATGGGACACCTTGTGGGTTCTTCAACTGCTCTAGAGGGGTTCGTCAGGGGGACCCTTTATCCCCTCTTCTTTTCTGCCTTGCAGAAGAGGTTCTCAGCAGGGGGCTCTGTGATCTAGTGAGTAGGGGAAAAATCAAGAGCATCGCTGCCCCTAAGAAGCTGCAACCTCCTTCTAATGTCTTATATGCAGACGACGTGATGATTTTTATGCAGGGTAACACCAGGGGGCTACGGGCTCTAAACAGGTTTCTTCAGGAATATGCAGCTAACTCAGGGCAGGTGGTTAATAAAACAAAGTCCTCTGTTTTCTTGGGAAGATATGCACGTCCAAGAGCAACTGCTATTCAACATATTCTTGGCATTAGAGAAGGTTGTGTGCCCTTTAATTATTTGGGGGTCCCAATATTTTTTGGGAGGCCTAAAGCGGCATACTTCAGGACTATTGTAGACAAGGTTCGCTGCAAATTAAGTTCTTGGAAAGGCTTGCAGCTATCACAAGCTGGGCGTCTGCAACTTATTTCTTCGGTCATCCAAAGTTTATTGGTTTATAGTTTTCAAGTCTATCATTGGCCACGTGATTTACTAAAGAAAGTACAAGGCTGGATGCGCAATTTTTACTGGTCTGGGGATCCTCTGAAGAAGGGCGCTGCTTTGGTTGCTTGGAAGCATTGTTGCTTGCCTAAAGACTGTGGAGGGCTTGGTCTAAAAAATATTTTCACTTTAAATCGCTCTATTCTTCTTAAGCGATGTTGGGAAATGGCAACAGGCACATCTTCATCTTCAGTGTTTCTCCGAGCTAGGTTCTTAAAAGTGAATCTAGACATTTATTCTTATTATCAAAGATCGTCTGTCTGGACCGGTCTGCGGCAATTATGGTATGTATTATTATCAAACTTGAGATGGCAGGTCGGTAACGGCAAGAATATATATTTTTGGAAGGACAATTGGCTCGGTAGCTCATTAGTAGTCAGATTGAACATTGATCCTTCAGTTCTGCCGTTCCTTCAAGATCGTGTTGGTGATTATATTGTGCAAAATCAATGGGACCTTCCATTAGAGTTTCTTGAGAACTTTCCAGAAGCTTCTAATGATATTATGAAGATTGACATTCCAGAGGCTGTTTTGGAGGATACTGTGATCTGGCCAACTACATCGTCTGGTTCCTTGACTGCAGCAGAGGCTTATACTTTTCTTTCGGACCCGAATGCTCCTCTTGAGTGGGGAAAGGCTATATGGCACAAAGCATTGCAGCCCCGAAAAAGCATTGTTTGTTGGAAAGTTTTCCATCACAAAATCCTGGTTGATGAAATTATGCAGCGCAGAGGTATGATTATTTGCTCTCAATGCTCACTCTGTCACTCGGATGTGGAATCTGTCCACCATCTTTTCGTTAATTGCCCTATGCTTCATGACGTATGGACTTGGTTGTTTGCCATGTTCTGCCTACAGCGCCCAGCGTTAATTTCTTCACAAGGGCTCTTCTCTCCTGTTTTATTAAACCAGATTCCACTTGCTTCAAAACTGTTATGGAGGTTAGCTGTTTGCAATCTGTTTTGGTGTATATGGACTGAAAGAAATCACATAAGGTTTGATGGAAGAGTATTTGTTTCCTGGCGATTTAAACAGTTCCTTATTAATTCTTTCAAGGAATCAGCGCTGTGTTACTTTGTTCCTTGCGCTCGAATTACGTCTGCAGTGCCGGTTTATTCATTGTTGGGAGTCTCTCCACTCAGAGCTAAGGCCCCAAAGTTTATGCCAGTGGTTTGGGAGGCTCCTCCCTCAGGTTGGATAAAGGTAAATACGGATGGTTCATTTTCAGGCGCTACAAGAGCAGGTTTTGGGGGTGTGTTCAGAGATTCTGAGGGGCTTTTTCTTGGGGGCTTCTCATTCAATGCTACGGTGCCAAGTGCTATTGATGCTGAGGTTCTCGCGATTATTGAAGCAATTAATGTTGCTTTGGTCCGTCGCTGGACTCACATTTGGTTGGAAACGGACTCACTACTCGCACTCCGATACTTCAAGAGCCCTGGTTTAATACCATGGAGATTGCGTACCTCATGGTTGAATTGTTTACACCAGGTTAGTCAGATCACTTTCAGAATGACACATATCTTTAGAGAAGGGAATGCTTTAGCTGACAAATTTGCCCGTTATGGGGCCGCAAATGTTGGTGCAGTCTGGTGGAGAACCTTACCCTCTTCCTTTCTAGCAGAGTTTGGTAGAGACTTGTCTTCAAGAATTAATTATCGCTTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

818

Amino Acids

92.97

Weight (kDa)

9.55

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 14 - 201 7e-22 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 457 - 539 4.6e-19 zinc-binding in reverse transcriptase
RVT_3 PF13456 666 - 784 1.9e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015144)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AarI CACCTGC 1 cut(s) 466
Acc16I TGCGCA 1 cut(s) 806
Acc36I ACCTGC 3 cut(s) 466, 1093, 2021
AccB1I GGYRCC 1 cut(s) 2098
AccI GTMKAC 1 cut(s) 645
AccII CGCG 1 cut(s) 2129
AciI CCGC 4 cut(s) 41, 623, 1063, 2358
AclWI GGATC 3 cut(s) 821, 834, 1175
AcoI YGGCCR 2 cut(s) 767, 1340
AcsI RAATTY 2 cut(s) 101, 2339
AcuI CTGAAG 5 cut(s) 434, 616, 854, 963, 1170
AcvI CACGTG 1 cut(s) 773
AcyI GRCGYC 1 cut(s) 703
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 2 cut(s) 792, 2251
AfeI AGCGCT 1 cut(s) 1854
AfiI CCNNNNNNNGG 5 cut(s) 1062, 1979, 1983, 2352, 2353
AflII CTTAAG 2 cut(s) 59, 938
AgeI ACCGGT 1 cut(s) 1055
AjiI CACGTC 2 cut(s) 394, 524
AjnI CCWGG 5 cut(s) 419, 1494, 1808, 2224, 2274
Alw26I GTCTC 2 cut(s) 1924, 2415
AlwI GGATC 3 cut(s) 821, 834, 1175
AlwNI CAGNNNCTG 1 cut(s) 1316
Ama87I CYCGRG 1 cut(s) 111
Aor51HI AGCGCT 1 cut(s) 1854
AoxI GGCC 5 cut(s) 614, 767, 1340, 1938, 2355
ApeKI GCWGC 9 cut(s) 344, 358, 461, 657, 685, 845, 1370, 1447, 1513
ApoI RAATTY 2 cut(s) 101, 2339
AseI ATTAAT 3 cut(s) 1833, 2145, 2439
AsiGI ACCGGT 1 cut(s) 1055
Asp700I GAANNNNTTC 2 cut(s) 288, 1478
AspLEI GCGC 7 cut(s) 807, 845, 1518, 1650, 1855, 1877, 2021
AspS9I GGNCC 8 cut(s) 250, 595, 1053, 1243, 1396, 1939, 2158, 2355
AsuHPI GGTGA 1 cut(s) 1229
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 6 cut(s) 250, 595, 1053, 1243, 1396, 2158
AxyI CCTNAGG 1 cut(s) 1978
BaeGI GKGCMC 1 cut(s) 579
BalI TGGCCA 2 cut(s) 769, 1342
BamHI GGATCC 1 cut(s) 826
BanI GGYRCC 1 cut(s) 2098
BanII GRGCYC 4 cut(s) 306, 436, 1677, 2225
BbrPI CACGTG 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 2421
BbvCI CCTCAGC 1 cut(s) 2118
BbvI GCAGC 9 cut(s) 331, 345, 473, 644, 697, 832, 1382, 1459, 1525
BccI CCATC 5 cut(s) 1092, 1491, 1587, 1784, 1997
BceAI ACGGC 2 cut(s) 1129, 1180
BciT130I CCWGG 5 cut(s) 421, 1496, 1810, 2226, 2276
BciVI GTATCC 1 cut(s) 1321
BcoDI GTCTC 2 cut(s) 1924, 2415
BfaI CTAG 6 cut(s) 180, 231, 314, 996, 1016, 2405
BfmI CTRYAG 3 cut(s) 1368, 1643, 1890
BfoI RGCGCY 4 cut(s) 846, 1651, 1856, 2022
BfrI CTTAAG 2 cut(s) 59, 938
BfuAI ACCTGC 3 cut(s) 466, 1093, 2021
BfuI GTATCC 1 cut(s) 1321
Bme1390I CCNGG 5 cut(s) 421, 1496, 1810, 2226, 2276
Bme18I GGWCC 6 cut(s) 250, 595, 1053, 1243, 1396, 2158
BmeT110I CYCGRG 1 cut(s) 111
BmgBI CACGTC 2 cut(s) 394, 524
BmgT120I GGNCC 8 cut(s) 250, 595, 1053, 1243, 1396, 1939, 2158, 2355
BmrFI CCNGG 5 cut(s) 421, 1496, 1810, 2226, 2276
BmsI GCATC 3 cut(s) 348, 792, 2104
BpiI GAAGAC 1 cut(s) 2421
Bpu10I CCTNAGC 2 cut(s) 1935, 2118
BpuEI CTTGAG 3 cut(s) 1114, 1283, 1433
BsaAI YACGTR 1 cut(s) 773
BsaHI GRCGYC 1 cut(s) 703
BsaJI CCNNGG 3 cut(s) 420, 2224, 2237
BsaWI WCCGGW 1 cut(s) 1055
BsaXI ACNNNNNCTCC 4 cut(s) 2190, 2220, 2233, 2263
Bsc4I CCNNNNNNNGG 5 cut(s) 1062, 1979, 1983, 2352, 2353
Bse118I RCCGGY 2 cut(s) 1055, 1897
Bse1I ACTGG 2 cut(s) 821, 1955
Bse21I CCTNAGG 1 cut(s) 1978
Bse3DI GCAATG 1 cut(s) 1442
BseBI CCWGG 5 cut(s) 421, 1496, 1810, 2226, 2276
BseDI CCNNGG 3 cut(s) 420, 2224, 2237
BseGI GGATG 4 cut(s) 726, 807, 1567, 2008
BseLI CCNNNNNNNGG 5 cut(s) 1062, 1979, 1983, 2352, 2353
BseMI GCAATG 1 cut(s) 1442
BseMII CTCAG 6 cut(s) 307, 483, 1942, 1992, 2049, 2109
BseNI ACTGG 2 cut(s) 821, 1955
BseRI GAGGAG 2 cut(s) 1398, 1962
BseSI GKGCMC 1 cut(s) 579
BseXI GCAGC 9 cut(s) 331, 345, 473, 644, 697, 832, 1382, 1459, 1525
BseYI CCCAGC 2 cut(s) 698, 1651
BsgI GTGCAG 1 cut(s) 2391
Bsh1236I CGCG 1 cut(s) 2129
BshFI GGCC 5 cut(s) 616, 769, 1342, 1940, 2357
BshNI GGYRCC 1 cut(s) 2098
BshTI ACCGGT 1 cut(s) 1055
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 2 cut(s) 1056, 1898
BslFI GGGAC 4 cut(s) 217, 263, 581, 1256
BslI CCNNNNNNNGG 5 cut(s) 1062, 1979, 1983, 2352, 2353
BsmAI GTCTC 2 cut(s) 1924, 2415
BsmFI GGGAC 4 cut(s) 217, 263, 581, 1256
BsmI GAATGC 2 cut(s) 1408, 2329
BsnI GGCC 5 cut(s) 616, 769, 1342, 1940, 2357
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 5 cut(s) 306, 436, 579, 1677, 2225
Bsp143I GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
Bsp19I CCATGG 1 cut(s) 2237
Bsp68I TCGCGA 1 cut(s) 2129
BspACI CCGC 4 cut(s) 41, 623, 1063, 2358
BspANI GGCC 5 cut(s) 616, 769, 1342, 1940, 2357
BspCNI CTCAG 6 cut(s) 306, 482, 1941, 1991, 2050, 2110
BspFNI CGCG 1 cut(s) 2129
BspHI TCATGA 1 cut(s) 1606
BspMAI CTGCAG 2 cut(s) 1372, 1894
BspMI ACCTGC 3 cut(s) 466, 1093, 2021
BspPI GGATC 3 cut(s) 821, 834, 1175
BspQI GCTCTTC 1 cut(s) 1682
BspT107I GGYRCC 1 cut(s) 2098
BspTI CTTAAG 2 cut(s) 59, 938
BsrDI GCAATG 1 cut(s) 1442
BsrFI RCCGGY 2 cut(s) 1055, 1897
BsrI ACTGG 2 cut(s) 821, 1955
BssAI RCCGGY 2 cut(s) 1055, 1897
BssECI CCNNGG 3 cut(s) 420, 2224, 2237
BssMI GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
BssNI GRCGYC 1 cut(s) 703
BssT1I CCWWGG 1 cut(s) 2237
Bst2UI CCWGG 5 cut(s) 421, 1496, 1810, 2226, 2276
Bst4CI ACNGT 6 cut(s) 186, 887, 1333, 1722, 1824, 2098
Bst6I CTCTTC 5 cut(s) 270, 279, 1682, 1789, 2401
BstACI GRCGYC 1 cut(s) 703
BstAFI CTTAAG 2 cut(s) 59, 938
BstBAI YACGTR 1 cut(s) 773
BstC8I GCNNGC 2 cut(s) 683, 875
BstDSI CCRYGG 1 cut(s) 2237
BstENI CCTNNNNNAGG 1 cut(s) 1977
BstF5I GGATG 4 cut(s) 726, 807, 1567, 2008
BstFNI CGCG 1 cut(s) 2129
BstH2I RGCGCY 4 cut(s) 846, 1651, 1856, 2022
BstHHI GCGC 7 cut(s) 807, 845, 1518, 1650, 1855, 1877, 2021
BstKTI GATC 8 cut(s) 125, 313, 829, 1043, 1183, 1210, 1338, 2289
BstMAI GTCTC 2 cut(s) 1924, 2415
BstMBI GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
BstMWI GCNNNNNNNGC 7 cut(s) 804, 854, 1376, 1542, 1647, 2027, 2114
BstNI CCWGG 5 cut(s) 421, 1496, 1810, 2226, 2276
BstSCI CCNGG 5 cut(s) 419, 1494, 1808, 2224, 2274
BstSFI CTRYAG 3 cut(s) 1368, 1643, 1890
BstSLI GKGCMC 1 cut(s) 579
BstUI CGCG 1 cut(s) 2129
BstV1I GCAGC 9 cut(s) 331, 345, 473, 644, 697, 832, 1382, 1459, 1525
BstV2I GAAGAC 1 cut(s) 2421
BstX2I RGATCY 1 cut(s) 826
BstXI CCANNNNNNTGG 1 cut(s) 1962
BstYI RGATCY 1 cut(s) 826
Bsu36I CCTNAGG 1 cut(s) 1978
BsuI GTATCC 1 cut(s) 1321
BsuRI GGCC 5 cut(s) 616, 769, 1342, 1940, 2357
BtgI CCRYGG 1 cut(s) 2237
BtgZI GCGATG 2 cut(s) 325, 958
BtrI CACGTC 2 cut(s) 394, 524
BtsCI GGATG 4 cut(s) 726, 807, 1567, 2008
BtsI GCAGTG 2 cut(s) 41, 1899
BtsIMutI CAGTG 4 cut(s) 41, 987, 1899, 1962
BtuMI TCGCGA 1 cut(s) 2129
BveI ACCTGC 3 cut(s) 466, 1093, 2021
Cac8I GCNNGC 2 cut(s) 683, 875
CaiI CAGNNNCTG 1 cut(s) 1316
CciI TCATGA 1 cut(s) 1606
CfoI GCGC 7 cut(s) 807, 845, 1518, 1650, 1855, 1877, 2021
Cfr10I RCCGGY 2 cut(s) 1055, 1897
Cfr13I GGNCC 8 cut(s) 250, 595, 1053, 1243, 1396, 1939, 2158, 2355
CseI GACGC 1 cut(s) 692
CsiI ACCWGGT 1 cut(s) 2274
Csp6I GTAC 2 cut(s) 791, 2250
CspAI ACCGGT 1 cut(s) 1055
CviAII CATG 4 cut(s) 1607, 1633, 2238, 2256
CviQI GTAC 2 cut(s) 791, 2250
DpnI GATC 8 cut(s) 124, 312, 828, 1042, 1182, 1209, 1337, 2288
DpnII GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
DraI TTTAAA 2 cut(s) 921, 1819
DraIII CACNNNGTG 1 cut(s) 212
EaeI YGGCCR 2 cut(s) 767, 1340
Eam1104I CTCTTC 5 cut(s) 270, 279, 1682, 1789, 2401
EarI CTCTTC 5 cut(s) 270, 279, 1682, 1789, 2401
Eco130I CCWWGG 1 cut(s) 2237
Eco147I AGGCCT 1 cut(s) 616
Eco24I GRGCYC 4 cut(s) 306, 436, 1677, 2225
Eco47I GGWCC 6 cut(s) 250, 595, 1053, 1243, 1396, 2158
Eco47III AGCGCT 1 cut(s) 1854
Eco57I CTGAAG 5 cut(s) 434, 616, 854, 963, 1170
Eco72I CACGTG 1 cut(s) 773
Eco81I CCTNAGG 1 cut(s) 1978
Eco88I CYCGRG 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 1977
EcoO109I RGGNCCY 4 cut(s) 250, 595, 1243, 1939
EcoRII CCWGG 5 cut(s) 419, 1494, 1808, 2224, 2274
EcoT14I CCWWGG 1 cut(s) 2237
EcoT38I GRGCYC 4 cut(s) 306, 436, 1677, 2225
ErhI CCWWGG 1 cut(s) 2237
FaeI CATG 4 cut(s) 1610, 1636, 2241, 2259
FaqI GGGAC 4 cut(s) 217, 263, 581, 1256
FatI CATG 4 cut(s) 1606, 1632, 2237, 2255
FauI CCCGC 1 cut(s) 34
FblI GTMKAC 1 cut(s) 645
FokI GGATG 4 cut(s) 713, 814, 1574, 2015
FriOI GRGCYC 4 cut(s) 306, 436, 1677, 2225
FspBI CTAG 6 cut(s) 180, 231, 314, 996, 1016, 2405
FspI TGCGCA 1 cut(s) 806
GlaI GCGC 7 cut(s) 806, 844, 1517, 1649, 1854, 1876, 2020
GsaI CCCAGC 2 cut(s) 702, 1655
HaeII RGCGCY 4 cut(s) 846, 1651, 1856, 2022
HaeIII GGCC 5 cut(s) 616, 769, 1342, 1940, 2357
HapII CCGG 2 cut(s) 1056, 1898
HgaI GACGC 1 cut(s) 692
HhaI GCGC 7 cut(s) 807, 845, 1518, 1650, 1855, 1877, 2021
Hin1I GRCGYC 1 cut(s) 703
Hin1II CATG 4 cut(s) 1610, 1636, 2241, 2259
Hin6I GCGC 7 cut(s) 805, 843, 1516, 1648, 1853, 1875, 2019
HinP1I GCGC 7 cut(s) 805, 843, 1516, 1648, 1853, 1875, 2019
HindIII AAGCTT 1 cut(s) 1278
HpaII CCGG 2 cut(s) 1056, 1898
HphI GGTGA 1 cut(s) 1229
Hpy166II GTNNAC 3 cut(s) 646, 1576, 2270
Hpy8I GTNNAC 3 cut(s) 646, 1576, 2270
Hpy99I CGWCG 2 cut(s) 395, 2166
HpyAV CCTTC 8 cut(s) 378, 560, 832, 1129, 1194, 1211, 1256, 2312
HpyCH4III ACNGT 6 cut(s) 186, 887, 1333, 1722, 1824, 2098
HpyCH4IV ACGT 5 cut(s) 393, 523, 772, 1611, 1886
HpyF10VI GCNNNNNNNGC 7 cut(s) 804, 854, 1376, 1542, 1647, 2027, 2114
HpySE526I ACGT 5 cut(s) 393, 523, 772, 1611, 1886
Hsp92I GRCGYC 1 cut(s) 703
Hsp92II CATG 4 cut(s) 1610, 1636, 2241, 2259
HspAI GCGC 7 cut(s) 805, 843, 1516, 1648, 1853, 1875, 2019
KflI GGGWCCC 2 cut(s) 250, 595
Kzo9I GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
LguI GCTCTTC 1 cut(s) 1682
LmnI GCTCC 2 cut(s) 1411, 1975
Lsp1109I GCAGC 9 cut(s) 331, 345, 473, 644, 697, 832, 1382, 1459, 1525
LweI GCATC 3 cut(s) 348, 792, 2104
MabI ACCWGGT 1 cut(s) 2274
MaeI CTAG 6 cut(s) 180, 231, 314, 996, 1016, 2405
MaeII ACGT 5 cut(s) 393, 523, 772, 1611, 1886
MaeIII GTNAC 4 cut(s) 413, 1109, 1553, 1859
MalI GATC 8 cut(s) 124, 312, 828, 1042, 1182, 1209, 1337, 2288
MboI GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
MfeI CAATTG 1 cut(s) 1141
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 5 cut(s) 306, 436, 579, 1677, 2225
MlsI TGGCCA 2 cut(s) 769, 1342
MluNI TGGCCA 2 cut(s) 769, 1342
MlyI GAGTC 3 cut(s) 1926, 2164, 2186
MmeI TCCRAC 3 cut(s) 1451, 1964, 2163
Mox20I TGGCCA 2 cut(s) 769, 1342
MroXI GAANNNNTTC 2 cut(s) 288, 1478
MscI TGGCCA 2 cut(s) 769, 1342
MslI CAYNNNNRTG 1 cut(s) 1560
Msp20I TGGCCA 2 cut(s) 769, 1342
MspCI CTTAAG 2 cut(s) 59, 938
MspI CCGG 2 cut(s) 1056, 1898
MspR9I CCNGG 5 cut(s) 421, 1496, 1810, 2226, 2276
MunI CAATTG 1 cut(s) 1141
Mva1269I GAATGC 2 cut(s) 1408, 2329
MvaI CCWGG 5 cut(s) 421, 1496, 1810, 2226, 2276
MvnI CGCG 1 cut(s) 2129
MwoI GCNNNNNNNGC 7 cut(s) 804, 854, 1376, 1542, 1647, 2027, 2114
NcoI CCATGG 1 cut(s) 2237
NdeII GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
NlaIII CATG 4 cut(s) 1610, 1636, 2241, 2259
NmuCI GTSAC 1 cut(s) 1553
NruI TCGCGA 1 cut(s) 2129
NsbI TGCGCA 1 cut(s) 806
PaeR7I CTCGAG 1 cut(s) 111
PagI TCATGA 1 cut(s) 1606
PaqCI CACCTGC 1 cut(s) 466
PceI AGGCCT 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 1682
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 2 cut(s) 1408, 2329
PdmI GAANNNNTTC 2 cut(s) 288, 1478
PfeI GAWTC 7 cut(s) 19, 157, 1012, 1568, 1702, 1847, 2054
PinAI ACCGGT 1 cut(s) 1055
PleI GAGTC 3 cut(s) 1925, 2164, 2186
PmaCI CACGTG 1 cut(s) 773
PmlI CACGTG 1 cut(s) 773
PpsI GAGTC 3 cut(s) 1925, 2164, 2186
Ppu21I YACGTR 1 cut(s) 773
PpuMI RGGWCCY 3 cut(s) 250, 595, 1243
PshBI ATTAAT 3 cut(s) 1833, 2145, 2439
PsiI TTATAA 1 cut(s) 149
Psp5II RGGWCCY 3 cut(s) 250, 595, 1243
Psp6I CCWGG 5 cut(s) 419, 1494, 1808, 2224, 2274
PspCI CACGTG 1 cut(s) 773
PspFI CCCAGC 2 cut(s) 698, 1651
PspGI CCWGG 5 cut(s) 419, 1494, 1808, 2224, 2274
PspPI GGNCC 8 cut(s) 250, 595, 1053, 1243, 1396, 1939, 2158, 2355
PspPPI RGGWCCY 3 cut(s) 250, 595, 1243
PspXI VCTCGAGB 1 cut(s) 111
PsrI GAACNNNNNNTAC 2 cut(s) 636, 668
PstI CTGCAG 2 cut(s) 1372, 1894
PstNI CAGNNNCTG 1 cut(s) 1316
PsuI RGATCY 1 cut(s) 826
RruI TCGCGA 1 cut(s) 2129
RsaI GTAC 2 cut(s) 792, 2251
RsaNI GTAC 2 cut(s) 791, 2250
RseI CAYNNNNRTG 1 cut(s) 1560
SapI GCTCTTC 1 cut(s) 1682
Sau3AI GATC 8 cut(s) 122, 310, 826, 1040, 1180, 1207, 1335, 2286
Sau96I GGNCC 8 cut(s) 250, 595, 1053, 1243, 1396, 1939, 2158, 2355
SchI GAGTC 3 cut(s) 1926, 2164, 2186
ScrFI CCNGG 5 cut(s) 421, 1496, 1810, 2226, 2276
SduI GDGCHC 5 cut(s) 306, 436, 579, 1677, 2225
SexAI ACCWGGT 1 cut(s) 2274
SfaNI GCATC 3 cut(s) 348, 792, 2104
SfcI CTRYAG 3 cut(s) 1368, 1643, 1890
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 6 cut(s) 250, 595, 1053, 1243, 1396, 2158
SlaI CTCGAG 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 1560
SmlI CTYRAG 6 cut(s) 59, 111, 938, 1093, 1262, 1412
SmoI CTYRAG 6 cut(s) 59, 111, 938, 1093, 1262, 1412
SseBI AGGCCT 1 cut(s) 616
SsiI CCGC 4 cut(s) 41, 623, 1063, 2358
SspI AATATT 3 cut(s) 52, 603, 910
SspMI CTAG 6 cut(s) 180, 231, 314, 996, 1016, 2405
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 5 cut(s) 419, 1494, 1808, 2224, 2274
StyI CCWWGG 1 cut(s) 2237
TaaI ACNGT 6 cut(s) 186, 887, 1333, 1722, 1824, 2098
TaiI ACGT 5 cut(s) 396, 526, 775, 1614, 1889
TaqI TCGA 2 cut(s) 112, 1879
TaqII GACCGA 1 cut(s) 712
TatI WGTACW 1 cut(s) 790
TauI GCSGC 3 cut(s) 626, 1066, 2360
TfiI GAWTC 7 cut(s) 19, 157, 1012, 1568, 1702, 1847, 2054
TscAI CASTG 4 cut(s) 41, 987, 1899, 1962
TseFI GTSAC 1 cut(s) 1553
TseI GCWGC 9 cut(s) 344, 358, 461, 657, 685, 845, 1370, 1447, 1513
Tsp45I GTSAC 1 cut(s) 1553
TspDTI ATGAA 7 cut(s) 32, 963, 1310, 1518, 1595, 1896, 1998
TspGWI ACGGA 3 cut(s) 2015, 2150, 2204
TspRI CASTG 4 cut(s) 41, 987, 1899, 1962
Vha464I CTTAAG 2 cut(s) 59, 938
VpaK11BI GGWCC 6 cut(s) 250, 595, 1053, 1243, 1396, 2158
VspI ATTAAT 3 cut(s) 1833, 2145, 2439
XagI CCTNNNNNAGG 1 cut(s) 1977
XapI RAATTY 2 cut(s) 101, 2339
XbaI TCTAGA 2 cut(s) 230, 1015
XhoI CTCGAG 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 2 cut(s) 288, 1478
XspI CTAG 6 cut(s) 180, 231, 314, 996, 1016, 2405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.