RLG00000012223

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015144
Physical Location & Seq
Forward (+)
16383675 .. 16384236
562 bp
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UTR
Exon/CDS
Intron
RLM00000012223

Sequence Viewer

Length: 492 bp
ATGAAGAGGACAATGCCATGGAGTGATGATGAGGACGATTCCTCATCCGACGAGGAGTCCGAACCATCACAAGTGAAATCAGGAAAGCCGAAGAGCAAGGTTTTGGATTTCGAGGCGTTGAGGAAACACGGTTACAGAGGAGGACCGTCTATACTGAAGGTGCCTCCACCGAAGGAGTCCGACAAGGACAAGGACTGGTCTTGGTCGACCGGAGTGGATCATAAGGTGAAGAGTGGGACCACCACCAAGGAGAAGGTGGTTGAGGAAGAGAGCAAAGAACAGCGACAGAAGACGAGGGATGCATTAGCGGCCGGGGAGCAGCTGGAGTATGTGCTGACCAGGAAGGAGAAGGAGAAGGAGAAGAACTTGTCGTTTTCGCAGAAGGAGAAGAGGAAGAGGGACCTTGGTCAGGCCAGCAGGGGGAAGAACTATGTTGAAGAAGAGAAGAGGTTGCTGAGGGAGAATGGTGTCTACTCTGGGTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.69

Weight (kDa)

8.57

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccI GTMKAC 2 cut(s) 206, 471
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 409, 420
AgsI TTSAA 1 cut(s) 437
AhdI GACNNNNNGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AlwI GGATC 1 cut(s) 225
AoxI GGCC 2 cut(s) 309, 411
ApeKI GCWGC 1 cut(s) 319
AspS9I GGNCC 3 cut(s) 143, 237, 400
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 3 cut(s) 143, 237, 400
BanI GGYRCC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 296
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 1 cut(s) 313
BisI GCNGC 2 cut(s) 309, 320
BlsI GCNGC 2 cut(s) 310, 321
Bme1390I CCNGG 2 cut(s) 313, 340
Bme18I GGWCC 3 cut(s) 143, 237, 400
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 143, 237, 400
BmiI GGNNCC 3 cut(s) 162, 238, 401
BmrFI CCNGG 2 cut(s) 313, 340
BmsI GCATC 2 cut(s) 289, 475
BoxI GACNNNNGTC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 4 cut(s) 17, 246, 312, 403
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 420
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 4 cut(s) 17, 246, 312, 403
BseGI GGATG 2 cut(s) 44, 304
BseLI CCNNNNNNNGG 2 cut(s) 409, 420
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 68, 153
BseX3I CGGCCG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 331
Bsh1285I CGRYCG 2 cut(s) 210, 312
BshFI GGCC 2 cut(s) 311, 413
BshNI GGYRCC 1 cut(s) 160
BsiEI CGRYCG 2 cut(s) 210, 312
BsiSI CCGG 2 cut(s) 210, 312
BslFI GGGAC 2 cut(s) 250, 413
BslI CCNNNNNNNGG 2 cut(s) 409, 420
BsmFI GGGAC 2 cut(s) 250, 413
BsnI GGCC 2 cut(s) 311, 413
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 308
BspANI GGCC 2 cut(s) 311, 413
BspCNI CTCAG 1 cut(s) 447
BspLI GGNNCC 3 cut(s) 162, 238, 401
BspPI GGATC 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 17, 246, 312, 403
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 3 cut(s) 17, 246, 403
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 131, 147
Bst6I CTCTTC 7 cut(s) 86, 224, 261, 383, 389, 435, 440
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 455, 489
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 44, 304
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 2 cut(s) 210, 312
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 340
BstPAI GACNNNNGTC 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 311, 338
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 296
BstZI CGGCCG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 311, 413
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 44, 304
Cac8I GCNNGC 1 cut(s) 415
Cfr13I GGNCC 3 cut(s) 143, 237, 400
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 88, 311, 322, 413
CviKI_1 RGCY 4 cut(s) 88, 311, 322, 413
DdeI CTNAG 2 cut(s) 455, 489
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 7 cut(s) 86, 224, 261, 383, 389, 435, 440
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 7 cut(s) 86, 224, 261, 383, 389, 435, 440
EclXI CGGCCG 1 cut(s) 309
Eco130I CCWWGG 3 cut(s) 17, 246, 403
Eco47I GGWCC 3 cut(s) 143, 237, 400
Eco52I CGGCCG 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 338
EcoT14I CCWWGG 3 cut(s) 17, 246, 403
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 3 cut(s) 17, 246, 403
FaeI CATG 1 cut(s) 21
FaiI YATR 5 cut(s) 19, 152, 222, 330, 432
FaqI GGGAC 2 cut(s) 250, 413
FatI CATG 1 cut(s) 17
FblI GTMKAC 2 cut(s) 206, 471
Fnu4HI GCNGC 2 cut(s) 309, 320
FokI GGATG 2 cut(s) 31, 311
Fsp4HI GCNGC 2 cut(s) 309, 320
GluI GCNGC 2 cut(s) 309, 320
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 2 cut(s) 311, 413
HapII CCGG 2 cut(s) 210, 312
Hin1II CATG 1 cut(s) 21
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 3 cut(s) 38, 56, 176
HpaII CCGG 2 cut(s) 210, 312
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 207, 472
Hpy188I TCNGA 3 cut(s) 49, 61, 181
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 207, 472
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 7 cut(s) 151, 166, 247, 337, 343, 349, 376
HpyCH4III ACNGT 2 cut(s) 131, 147
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 455, 489
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 289, 475
MaeIII GTNAC 1 cut(s) 131
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MlyI GAGTC 2 cut(s) 65, 185
MmeI TCCRAC 2 cut(s) 72, 204
Mph1103I ATGCAT 1 cut(s) 304
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 2 cut(s) 210, 312
MspR9I CCNGG 2 cut(s) 313, 340
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 17
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 162, 238, 401
NsiI ATGCAT 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 310, 321
PleI GAGTC 2 cut(s) 64, 184
PpsI GAGTC 2 cut(s) 64, 184
PpuMI RGGWCCY 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 3 cut(s) 162, 238, 401
PspPI GGNCC 3 cut(s) 143, 237, 400
PspPPI RGGWCCY 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 322
SalI GTCGAC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 2 cut(s) 309, 320
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 3 cut(s) 143, 237, 400
SchI GAGTC 2 cut(s) 65, 185
ScrFI CCNGG 2 cut(s) 313, 340
SetI ASST 7 cut(s) 102, 162, 228, 258, 324, 405, 452
SfaNI GCATC 2 cut(s) 289, 475
SinI GGWCC 3 cut(s) 143, 237, 400
SsiI CCGC 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 311, 338
StyI CCWWGG 3 cut(s) 17, 246, 403
TaaI ACNGT 2 cut(s) 131, 147
TaqI TCGA 2 cut(s) 111, 206
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 38
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 3 cut(s) 143, 237, 400
XagI CCTNNNNNAGG 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 206, 471
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.