Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015144

Physical Location & Seq

Genomic Coordinates Reverse (-)

39843139 .. 39843981

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1280800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGAGGGCAATTCCATGGAGTGACGAGGAAGGAGATTCGGATTCCTCATCTGGGAAGTCATCAGATTCACCACCCTCCGAGAAAACAGCTTCACAAGTGAAATCTGGGAAGCCAAAGAGCAAAGTTGTGGACTTTGAGGCACTGAAGCAACATGGCTACAAGGGTGGGCCGTCTGTGCTGGGTGTGCCGCCACCGAAAGCGCCGGAGCAGGAGCCGAACTGGACTTGGTCTACCGGCAGGGAGGACGGTAAGGACGGCAAGCCCGGAACCAAGAAAACCGAGGAAGAAGAAGAATCTTATGAACAACGACAGAAGACGAGAGCTGCATTGGCCTCGGGAGAGAAGCTGGAAACTGCGCTGACCCGGAGCGATAAGCGAAACCTGTCGTTTTCGCAGAAGGAGAAGAGGAAGAGAGAGCTTGGGCAGGCAAGCAGGGGGAAGAACTACGTCGAAGAAGAGAAGAGGTTGCTGAGGGATAGTGGTGTTTACTCTGGTTTTGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.72

Weight (kDa)

8.92

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04614 AT4G04614
fragaria_vesca	FvH4_2g23140
malus_domestica	MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica	Prupe.8G236700_v2.0.a1
pyrus_communis	pycom11g24860
rosa_chinensis	RchiOBHm_Chr6g0290391
rosa_laevigata	RLG00000012223
rosa_multiflora	Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177110
rosa_rugosa	Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana	Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	233
AciI	CCGC	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	92, 326, 349, 421
AluI	AGCT	4 cut(s)	92, 326, 349, 421
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	170, 333
ApeKI	GCWGC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	205, 361
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	267, 367
AsuHPI	GGTGA	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	313
BceAI	ACGGC	2 cut(s)	157, 274
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BcnI	CCSGG	2 cut(s)	267, 367
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	2 cut(s)	191, 327
BlsI	GCNGC	2 cut(s)	192, 328
Bme1390I	CCNGG	2 cut(s)	267, 367
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	216, 271
BmrFI	CCNGG	2 cut(s)	267, 367
BpiI	GAAGAC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	267, 367
BsaJI	CCNNGG	3 cut(s)	17, 282, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	17, 282, 336
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	181
BshFI	GGCC	2 cut(s)	172, 335
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	4 cut(s)	206, 237, 267, 367
BslI	CCNNNNNNNGG	1 cut(s)	54
BsnI	GGCC	2 cut(s)	172, 335
BsoBI	CYCGRG	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	172, 335
BspCNI	CTCAG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	216, 271
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	17, 282, 336
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	4 cut(s)	401, 407, 453, 458
BstC8I	GCNNGC	3 cut(s)	263, 429, 433
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	205, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 187, 332
BstSCI	CCNGG	2 cut(s)	265, 365
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	172, 335
BtgI	CCRYGG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	263, 429, 433
CfoI	GCGC	2 cut(s)	205, 361
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	2 cut(s)	18, 155
DdeI	CTNAG	1 cut(s)	473
Eam1104I	CTCTTC	4 cut(s)	401, 407, 453, 458
EarI	CTCTTC	4 cut(s)	401, 407, 453, 458
Eco130I	CCWWGG	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	21, 158
FaiI	YATR	4 cut(s)	19, 156, 303, 508
FatI	CATG	2 cut(s)	17, 154
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	2 cut(s)	191, 327
Fsp4HI	GCNGC	2 cut(s)	191, 327
GlaI	GCGC	2 cut(s)	204, 360
GluI	GCNGC	2 cut(s)	191, 327
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	172, 335
HapII	CCGG	4 cut(s)	206, 237, 267, 367
HhaI	GCGC	2 cut(s)	205, 361
Hin1II	CATG	2 cut(s)	21, 158
Hin6I	GCGC	2 cut(s)	203, 359
HinP1I	GCGC	2 cut(s)	203, 359
HinfI	GANTC	4 cut(s)	38, 44, 68, 296
HpaII	CCGG	4 cut(s)	206, 237, 267, 367
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	3 cut(s)	133, 234, 490
Hpy188I	TCNGA	3 cut(s)	43, 67, 82
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	3 cut(s)	133, 234, 490
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	2 cut(s)	26, 394
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 187, 332
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	21, 158
HspAI	GCGC	2 cut(s)	203, 359
LmnI	GCTCC	3 cut(s)	208, 214, 369
Lsp1109I	GCAGC	1 cut(s)	313
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	23
MluCI	AATT	1 cut(s)	12
MspI	CCGG	4 cut(s)	206, 237, 267, 367
MspR9I	CCNGG	2 cut(s)	267, 367
MwoI	GCNNNNNNNGC	3 cut(s)	178, 187, 332
NciI	CCSGG	2 cut(s)	267, 367
NcoI	CCATGG	1 cut(s)	17
NlaIII	CATG	2 cut(s)	21, 158
NlaIV	GGNNCC	2 cut(s)	216, 271
NmuCI	GTSAC	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	38, 44, 68, 296
PflFI	GACNNNGTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	192, 328
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	216, 271
PspPI	GGNCC	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	229
SatI	GCNGC	2 cut(s)	191, 327
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	267, 367
SetI	ASST	7 cut(s)	94, 328, 351, 387, 423, 453, 470
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	265, 365
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	453
TasI	AATT	1 cut(s)	12
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	4 cut(s)	38, 44, 68, 296
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	17, 318
TspRI	CASTG	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.