Rroxscaffold_7G00177110

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015144
Physical Location & Seq
Forward (+)
16661579 .. 16662443
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177110.1

Sequence Viewer

Length: 492 bp
ATGCCATGGAGTGATGACGAGGACGATTCCTCATCCGACGAGGAGTCCGAACCATCACAAGTGAAATCAGGGAAGCCAAAGAGCAAGGTTTTGGATTTCGAGGCGTTGAGGAAACACGGTTACAGAGGAGGACCGTCTATACTGAAGGTGCCCCCACCCAAGGAGTCCGATAAGGACAAGGACTGGTCTTGGTCGACCGGAGTGGATCACAAGGTGAAGAGTGGAACCACCACCAAGGAGAAGGAGAAGGTGGATGAAGAAGAGAGCAAAGAACAGCGACAGAAGACGAGGGATGCATTGGCTGCCGGGGAGCAGCTGGAGTATGTGCTGACCAGGAAGGAGAAGGAGAAGGAGAAGGAGAAGAACTTGTCGTTTTCGCAGAAGGAGAAGAGGAAGAGGGACCTTGGTCAGGCCAGCAGGGGGAAGAACTATGTTGAAGAAGAGAAGAGGTTGCTGAGGGAGAATGGTGTCTATTCTGGGTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.71

Weight (kDa)

6.25

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 194
AclWI GGATC 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 164
AdeI CACNNNGTG 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 160, 409, 420
AgsI TTSAA 1 cut(s) 437
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 2 cut(s) 302, 313
AspS9I GGNCC 2 cut(s) 131, 400
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 2 cut(s) 131, 400
BaeGI GKGCMC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 2 cut(s) 289, 325
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 1 cut(s) 307
BisI GCNGC 2 cut(s) 303, 314
BlsI GCNGC 2 cut(s) 304, 315
Bme1390I CCNGG 2 cut(s) 307, 334
Bme18I GGWCC 2 cut(s) 131, 400
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 131, 400
BmiI GGNNCC 3 cut(s) 150, 226, 401
BmrFI CCNGG 2 cut(s) 307, 334
BmsI GCATC 2 cut(s) 283, 475
BoxI GACNNNNGTC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 307
BsaJI CCNNGG 5 cut(s) 5, 159, 234, 306, 403
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 409, 420
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 5 cut(s) 5, 159, 234, 306, 403
BseGI GGATG 3 cut(s) 32, 259, 298
BseLI CCNNNNNNNGG 3 cut(s) 160, 409, 420
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 56, 141
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 2 cut(s) 289, 325
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 413
BshNI GGYRCC 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 198, 306
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 3 cut(s) 160, 409, 420
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 5
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 1 cut(s) 447
BspLI GGNNCC 3 cut(s) 150, 226, 401
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 5 cut(s) 5, 159, 234, 306, 403
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 4 cut(s) 5, 159, 234, 403
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 119, 135
Bst6I CTCTTC 6 cut(s) 212, 255, 383, 389, 435, 440
BstAPI GCANNNNNTGC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 455, 489
BstDSI CCRYGG 1 cut(s) 5
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 3 cut(s) 32, 259, 298
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 334
BstPAI GACNNNNGTC 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 305, 332
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 289, 325
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 3 cut(s) 32, 259, 298
Cac8I GCNNGC 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 131, 400
CviAII CATG 1 cut(s) 6
CviJI RGCY 4 cut(s) 76, 302, 316, 413
CviKI_1 RGCY 4 cut(s) 76, 302, 316, 413
DdeI CTNAG 2 cut(s) 455, 489
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DraIII CACNNNGTG 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 6 cut(s) 212, 255, 383, 389, 435, 440
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 6 cut(s) 212, 255, 383, 389, 435, 440
Eco130I CCWWGG 4 cut(s) 5, 159, 234, 403
Eco47I GGWCC 2 cut(s) 131, 400
Eco57I CTGAAG 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 4 cut(s) 5, 159, 234, 403
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 4 cut(s) 5, 159, 234, 403
FaeI CATG 1 cut(s) 9
FaiI YATR 4 cut(s) 7, 140, 324, 432
FaqI GGGAC 1 cut(s) 413
FatI CATG 1 cut(s) 5
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 303, 314
FokI GGATG 3 cut(s) 19, 266, 305
Fsp4HI GCNGC 2 cut(s) 303, 314
GluI GCNGC 2 cut(s) 303, 314
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 413
HapII CCGG 2 cut(s) 198, 306
Hin1II CATG 1 cut(s) 9
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 3 cut(s) 26, 44, 164
HpaII CCGG 2 cut(s) 198, 306
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 37, 49, 169
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 8 cut(s) 139, 235, 241, 331, 337, 343, 349, 376
HpyCH4III ACNGT 2 cut(s) 119, 135
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 455, 489
Hsp92II CATG 1 cut(s) 9
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 289, 325
LweI GCATC 2 cut(s) 283, 475
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 153
MlyI GAGTC 2 cut(s) 53, 173
MmeI TCCRAC 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 2 cut(s) 198, 306
MspR9I CCNGG 2 cut(s) 307, 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 5
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 3 cut(s) 150, 226, 401
NsiI ATGCAT 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 304, 315
PleI GAGTC 2 cut(s) 52, 172
PpsI GAGTC 2 cut(s) 52, 172
PpuMI RGGWCCY 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 3 cut(s) 150, 226, 401
PspPI GGNCC 2 cut(s) 131, 400
PspPPI RGGWCCY 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 316
SalI GTCGAC 1 cut(s) 193
SatI GCNGC 2 cut(s) 303, 314
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 131, 400
SchI GAGTC 2 cut(s) 53, 173
ScrFI CCNGG 2 cut(s) 307, 334
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 90, 150, 216, 252, 318, 405, 452
SfaNI GCATC 2 cut(s) 283, 475
SinI GGWCC 2 cut(s) 131, 400
StyD4I CCNGG 2 cut(s) 305, 332
StyI CCWWGG 4 cut(s) 5, 159, 234, 403
TaaI ACNGT 2 cut(s) 119, 135
TaqI TCGA 2 cut(s) 99, 194
TfiI GAWTC 1 cut(s) 26
TseI GCWGC 2 cut(s) 302, 313
TspDTI ATGAA 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 131, 400
XagI CCTNNNNNAGG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.