MD03G1260500.v1.1

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015144
Physical Location & Seq
Reverse (-)
34728892 .. 34729769
878 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1260500.v1.1.491

Sequence Viewer

Length: 510 bp
ATGAAGAGAGCAATTCCATGGAGTGATGAGGAAGGAGATTCGGATTCCTCATCTGGGCAGTCATCAGATTCACCACCCTCCAAGAAAACAGCTTCACAAGGGAAATCTGGGAAGCCAAAGAGCAAAGTTGTGGACTTTGAGGCACTGAAGCAACATGGCTACAAAGGTGGGCCATCGGTGCTGGCTGTGCCGCCACCGAGAGAGCCGGAGCAGGAGCCGAACTGGTCTTGGGCTACCGGCAGGGAGGACGGTAAGGACAGCAAGCCCGGAACCAAGAAAACCGAGGAAGAAGAAGAATCTTATGAAGAGCGACAGAAGACGAGGGCTGCATTGGCCTCGGGAGAGAAGCTTGAAACTGCGCTGACCCGGAGCGATAAGCGAAACCTGTCCTTCTCGCAGAAGGAGAAGAGGAAGAGAGAGCTTGGGCAGGCAAGCAGGGGGAAGAACTATGTTGAAGAAGAGAAGAGGTTGCTGAGGGAGAGTGGTGTTTACTCTGGTTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.76

Weight (kDa)

8.63

Isoelectric Point (pI)

64.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 2 cut(s) 353, 455
AluBI AGCT 3 cut(s) 92, 349, 421
AluI AGCT 3 cut(s) 92, 349, 421
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 2 cut(s) 170, 333
ApeKI GCWGC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 2 cut(s) 267, 367
AsuHPI GGTGA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 181
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BcnI CCSGG 2 cut(s) 267, 367
BisI GCNGC 2 cut(s) 191, 327
BlsI GCNGC 2 cut(s) 192, 328
Bme1390I CCNGG 2 cut(s) 267, 367
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 216, 271
BmrFI CCNGG 2 cut(s) 267, 367
BmsI GCATC 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 267, 367
BsaJI CCNNGG 3 cut(s) 17, 282, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 17, 282, 336
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 2 cut(s) 172, 335
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 4 cut(s) 206, 237, 267, 367
BslI CCNNNNNNNGG 1 cut(s) 54
BsnI GGCC 2 cut(s) 172, 335
BsoBI CYCGRG 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 172, 335
BspCNI CTCAG 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 216, 271
BspQI GCTCTTC 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 3 cut(s) 17, 282, 336
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 5 cut(s) 300, 401, 407, 453, 458
BstC8I GCNNGC 4 cut(s) 183, 263, 429, 433
BstDEI CTNAG 2 cut(s) 473, 507
BstDSI CCRYGG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 361
BstMWI GCNNNNNNNGC 3 cut(s) 178, 187, 332
BstSCI CCNGG 2 cut(s) 265, 365
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 323
BsuRI GGCC 2 cut(s) 172, 335
BtgI CCRYGG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 4 cut(s) 183, 263, 429, 433
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 2 cut(s) 18, 155
DdeI CTNAG 2 cut(s) 473, 507
Eam1104I CTCTTC 5 cut(s) 300, 401, 407, 453, 458
EarI CTCTTC 5 cut(s) 300, 401, 407, 453, 458
Eco130I CCWWGG 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 21, 158
FaiI YATR 4 cut(s) 19, 156, 303, 450
FatI CATG 2 cut(s) 17, 154
Fnu4HI GCNGC 2 cut(s) 191, 327
Fsp4HI GCNGC 2 cut(s) 191, 327
GlaI GCGC 1 cut(s) 360
GluI GCNGC 2 cut(s) 191, 327
HaeIII GGCC 2 cut(s) 172, 335
HapII CCGG 4 cut(s) 206, 237, 267, 367
HhaI GCGC 1 cut(s) 361
Hin1II CATG 2 cut(s) 21, 158
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 38, 44, 68, 296
HpaII CCGG 4 cut(s) 206, 237, 267, 367
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 133, 490
Hpy188I TCNGA 2 cut(s) 43, 67
Hpy188III TCNNGA 1 cut(s) 339
Hpy8I GTNNAC 2 cut(s) 133, 490
HpyAV CCTTC 3 cut(s) 26, 394, 400
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 187, 332
HpyF3I CTNAG 2 cut(s) 473, 507
Hsp92II CATG 2 cut(s) 21, 158
HspAI GCGC 1 cut(s) 359
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 3 cut(s) 208, 214, 369
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 493
MluCI AATT 1 cut(s) 12
MspI CCGG 4 cut(s) 206, 237, 267, 367
MspR9I CCNGG 2 cut(s) 267, 367
MwoI GCNNNNNNNGC 3 cut(s) 178, 187, 332
NciI CCSGG 2 cut(s) 267, 367
NcoI CCATGG 1 cut(s) 17
NlaIII CATG 2 cut(s) 21, 158
NlaIV GGNNCC 2 cut(s) 216, 271
PciSI GCTCTTC 1 cut(s) 300
PfeI GAWTC 4 cut(s) 38, 44, 68, 296
PkrI GCNGC 2 cut(s) 192, 328
PspN4I GGNNCC 2 cut(s) 216, 271
PspPI GGNCC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 300
SatI GCNGC 2 cut(s) 191, 327
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 267, 367
SetI ASST 6 cut(s) 94, 169, 351, 387, 423, 470
SfaNI GCATC 1 cut(s) 493
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 265, 365
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 251
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 4 cut(s) 38, 44, 68, 296
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 17, 318
TspRI CASTG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.