Rmu_ssc0000094.1_g000002

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000094.1
OG0015144
Physical Location & Seq
Reverse (-)
6579 .. 6920
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000094.1_g000002.1.cds

Sequence Viewer

Length: 342 bp
ctgaaggtgcctccacccaaggagtccgataaggacaaggactggtcttggtcgaccggagtggatcacaaggtgaagagtggaaccaccaccaaggagaaggtggtggatgaagaagagagcaaagaacggcgacagaagacgagggatgcattggccgccggggaggagctggagtatgtgatgaccaggaaggagaaggagaaggagaagaacttgccgttttcgcagaaggagaagaggaagagggaccttggccaggccagcagggggaagaactatgttgaagaagagaagaggttgctgagggagaatggtgtctactctgggtttgatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.16

Weight (kDa)

9.01

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccI GTMKAC 2 cut(s) 53, 321
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 2 cut(s) 156, 256
AcuI CTGAAG 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 259, 270
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 2 cut(s) 188, 258
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
AlwI GGATC 1 cut(s) 72
AoxI GGCC 3 cut(s) 156, 256, 261
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 258
BanI GGYRCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 146
BbvCI CCTCAGC 1 cut(s) 305
BceAI ACGGC 2 cut(s) 146, 205
BciT130I CCWGG 2 cut(s) 190, 260
BcnI CCSGG 1 cut(s) 163
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 3 cut(s) 163, 190, 260
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 9, 85, 251
BmrFI CCNGG 3 cut(s) 163, 190, 260
BmsI GCATC 2 cut(s) 139, 325
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 4 cut(s) 18, 93, 162, 253
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 270
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 2 cut(s) 190, 260
BseDI CCNNGG 4 cut(s) 18, 93, 162, 253
BseGI GGATG 2 cut(s) 115, 154
BseLI CCNNNNNNNGG 2 cut(s) 259, 270
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 158, 258, 263
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 57, 162
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 259, 270
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 3 cut(s) 158, 258, 263
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 1 cut(s) 159
BspANI GGCC 3 cut(s) 158, 258, 263
BspCNI CTCAG 1 cut(s) 297
BspLI GGNNCC 3 cut(s) 9, 85, 251
BspPI GGATC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 4 cut(s) 18, 93, 162, 253
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 3 cut(s) 18, 93, 253
Bst2UI CCWGG 2 cut(s) 190, 260
Bst6I CTCTTC 6 cut(s) 71, 111, 233, 239, 285, 290
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 305, 339
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 115, 154
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 158, 226, 264
BstNI CCWGG 2 cut(s) 190, 260
BstSCI CCNGG 3 cut(s) 161, 188, 258
BstV2I GAAGAC 1 cut(s) 146
BsuRI GGCC 3 cut(s) 158, 258, 263
BtsCI GGATG 2 cut(s) 115, 154
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 250
CviJI RGCY 4 cut(s) 158, 172, 258, 263
CviKI_1 RGCY 4 cut(s) 158, 172, 258, 263
DdeI CTNAG 2 cut(s) 305, 339
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
DraIII CACNNNGTG 1 cut(s) 73
EaeI YGGCCR 2 cut(s) 156, 256
Eam1104I CTCTTC 6 cut(s) 71, 111, 233, 239, 285, 290
EarI CTCTTC 6 cut(s) 71, 111, 233, 239, 285, 290
Eco130I CCWWGG 3 cut(s) 18, 93, 253
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 188, 258
EcoT14I CCWWGG 3 cut(s) 18, 93, 253
EcoT22I ATGCAT 1 cut(s) 154
ErhI CCWWGG 3 cut(s) 18, 93, 253
FaiI YATR 2 cut(s) 180, 282
FaqI GGGAC 1 cut(s) 263
FblI GTMKAC 2 cut(s) 53, 321
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 2 cut(s) 122, 161
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 158, 258, 263
HapII CCGG 2 cut(s) 57, 162
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 1 cut(s) 23
HpaII CCGG 2 cut(s) 57, 162
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 54, 322
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 2 cut(s) 54, 322
HpyAV CCTTC 5 cut(s) 94, 187, 193, 199, 226
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 226, 264
HpyF3I CTNAG 2 cut(s) 305, 339
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 169
LweI GCATC 2 cut(s) 139, 325
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 7 cut(s) 21, 138, 160, 234, 240, 291, 300
Mox20I TGGCCA 1 cut(s) 258
Mph1103I ATGCAT 1 cut(s) 154
MscI TGGCCA 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 2 cut(s) 57, 162
MspR9I CCNGG 3 cut(s) 163, 190, 260
MvaI CCWGG 2 cut(s) 190, 260
MwoI GCNNNNNNNGC 3 cut(s) 158, 226, 264
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 64
NlaIV GGNNCC 3 cut(s) 9, 85, 251
NsiI ATGCAT 1 cut(s) 154
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 188, 258
PspGI CCWGG 2 cut(s) 188, 258
PspN4I GGNNCC 3 cut(s) 9, 85, 251
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
SalI GTCGAC 1 cut(s) 52
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 163, 190, 260
SetI ASST 6 cut(s) 9, 75, 105, 174, 255, 302
SfaNI GCATC 2 cut(s) 139, 325
SinI GGWCC 1 cut(s) 250
SsiI CCGC 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 161, 188, 258
StyI CCWWGG 3 cut(s) 18, 93, 253
TaqI TCGA 1 cut(s) 53
TauI GCSGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmiI GTMKAC 2 cut(s) 53, 321
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.