RchiOBHm_Chr6g0290391

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015144
Physical Location & Seq
Reverse (-)
53421436 .. 53422224
789 bp
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UTR
Exon/CDS
Intron
PRQ26053

Sequence Viewer

Length: 495 bp
ATGAAGAGGACAATGCCATGGAGTGATGACGAGGACGATTCCTCATCCGACGAGGAGTCCGAACCATCACAAGTGAAATCAGGGAAGCCAAAGAGCAAGGTTTTGGATTTCGAGGCGTTGAGGAAACACGGTTACAGAGGAGGACCGTCTATACTGAAGGTGCCTCCACCCAAGGAGTCCGATAAGGACAAGGACTGGTCTTGGTCGACCGGAGTGGATCACAAGGTGAAGAGTGGAACCACCACCAAGGAGAAGGTGGTGGATGAAGAAGAGAGCAAAGAACAGCGACAGAAGACGAGGGATGCATTGGCCGCCGGGGAGCAGCTGGAGTATGTGCTGACCAGGAAGGAGAAGGACAAGGAGAAGAACTTGTCGTTTTCGCAGAAGGAGAAGAGGAAGAGGGACCTTGGTCAGGCCAGCAGGGGGAAGAACTACGTTGAAGAAGAGAAGAGGTTGCTGAGGGAGAATGGTGTCTACTCTGGGTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.79

Weight (kDa)

7.79

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccI GTMKAC 2 cut(s) 206, 474
AciI CCGC 1 cut(s) 312
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 412, 423
AgsI TTSAA 1 cut(s) 440
AhdI GACNNNNNGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
AlwI GGATC 1 cut(s) 225
AoxI GGCC 2 cut(s) 309, 414
ApeKI GCWGC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 143, 403
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 2 cut(s) 143, 403
BanI GGYRCC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 299
BbvCI CCTCAGC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 334
BccI CCATC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 1 cut(s) 316
BisI GCNGC 2 cut(s) 312, 323
BlsI GCNGC 2 cut(s) 313, 324
Bme1390I CCNGG 2 cut(s) 316, 343
Bme18I GGWCC 2 cut(s) 143, 403
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 143, 403
BmiI GGNNCC 3 cut(s) 162, 238, 404
BmrFI CCNGG 2 cut(s) 316, 343
BmsI GCATC 2 cut(s) 292, 478
BoxI GACNNNNGTC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 17, 171, 246, 315, 406
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 423
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 5 cut(s) 17, 171, 246, 315, 406
BseGI GGATG 3 cut(s) 44, 268, 307
BseLI CCNNNNNNNGG 2 cut(s) 412, 423
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 68, 153
BseXI GCAGC 1 cut(s) 334
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 311, 416
BshNI GGYRCC 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 210, 315
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 2 cut(s) 412, 423
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 2 cut(s) 311, 416
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 312
BspANI GGCC 2 cut(s) 311, 416
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 162, 238, 404
BspPI GGATC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 5 cut(s) 17, 171, 246, 315, 406
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 4 cut(s) 17, 171, 246, 406
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 131, 147
Bst6I CTCTTC 6 cut(s) 224, 264, 386, 392, 438, 443
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 458, 492
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 3 cut(s) 44, 268, 307
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 2 cut(s) 314, 341
BstV1I GCAGC 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 311, 416
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 44, 268, 307
Cac8I GCNNGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 143, 403
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 88, 311, 325, 416
CviKI_1 RGCY 4 cut(s) 88, 311, 325, 416
DdeI CTNAG 2 cut(s) 458, 492
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DraIII CACNNNGTG 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 6 cut(s) 224, 264, 386, 392, 438, 443
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 6 cut(s) 224, 264, 386, 392, 438, 443
Eco130I CCWWGG 4 cut(s) 17, 171, 246, 406
Eco47I GGWCC 2 cut(s) 143, 403
Eco57I CTGAAG 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 4 cut(s) 17, 171, 246, 406
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 4 cut(s) 17, 171, 246, 406
FaeI CATG 1 cut(s) 21
FaiI YATR 3 cut(s) 19, 152, 333
FaqI GGGAC 1 cut(s) 416
FatI CATG 1 cut(s) 17
FblI GTMKAC 2 cut(s) 206, 474
Fnu4HI GCNGC 2 cut(s) 312, 323
FokI GGATG 3 cut(s) 31, 275, 314
Fsp4HI GCNGC 2 cut(s) 312, 323
GluI GCNGC 2 cut(s) 312, 323
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 2 cut(s) 311, 416
HapII CCGG 2 cut(s) 210, 315
Hin1II CATG 1 cut(s) 21
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 3 cut(s) 38, 56, 176
HpaII CCGG 2 cut(s) 210, 315
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 207, 475
Hpy188I TCNGA 3 cut(s) 49, 61, 181
Hpy8I GTNNAC 2 cut(s) 207, 475
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 5 cut(s) 151, 247, 340, 346, 379
HpyCH4III ACNGT 2 cut(s) 131, 147
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 458, 492
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 292, 478
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 131
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MlyI GAGTC 2 cut(s) 65, 185
MmeI TCCRAC 1 cut(s) 72
Mph1103I ATGCAT 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 2 cut(s) 210, 315
MspR9I CCNGG 2 cut(s) 316, 343
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 316
NcoI CCATGG 1 cut(s) 17
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 162, 238, 404
NsiI ATGCAT 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 313, 324
PleI GAGTC 2 cut(s) 64, 184
PpsI GAGTC 2 cut(s) 64, 184
PpuMI RGGWCCY 1 cut(s) 403
PshAI GACNNNNGTC 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 3 cut(s) 162, 238, 404
PspPI GGNCC 2 cut(s) 143, 403
PspPPI RGGWCCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 325
SalI GTCGAC 1 cut(s) 205
SatI GCNGC 2 cut(s) 312, 323
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 2 cut(s) 143, 403
SchI GAGTC 2 cut(s) 65, 185
ScrFI CCNGG 2 cut(s) 316, 343
SetI ASST 8 cut(s) 102, 162, 228, 258, 327, 408, 438, 455
SfaNI GCATC 2 cut(s) 292, 478
SinI GGWCC 2 cut(s) 143, 403
SsiI CCGC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 314, 341
StyI CCWWGG 4 cut(s) 17, 171, 246, 406
TaaI ACNGT 2 cut(s) 131, 147
TaiI ACGT 1 cut(s) 438
TaqI TCGA 2 cut(s) 111, 206
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 38
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 17, 279
VpaK11BI GGWCC 2 cut(s) 143, 403
XagI CCTNNNNNAGG 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 206, 474
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.