Prupe.8G236700_v2.0.a1

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015144
Physical Location & Seq
Reverse (-)
20916860 .. 20917895
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G236700.1

Sequence Viewer

Length: 546 bp
ATGAAGAGGACAATGCCATGGAGTGAGGATAGTGATTCATCGGATTCACATTCAGAGTCTGAAGGCGACGATGGAGTTGGCAAGAGAAAAGCTGGGCAAGGCCAACCCTCCAAGAAAACAGCGTCACAAGTGATATCTGGGAAGCGAAAGAGCAAAGTTGTGGACTTTGAGGCATTGAAGCAATATGGGTACAAAGGTGGGCCGTCTGTGCTGAGCGTGCCCCCACCAAAAGAGCCCGAGAAGGAGCCAAACTGGTCTTGGTCTACCGGTAGGGAGGACAATAAGGAGGGTGCTAATGGTGGAACCAAGAAGGGAAATGAAGGAGAAGAAGAATCTTATGAGCAACGACAGAAGACGAGGGCTGCATTGGCCTCCGGGGAGCAGCTAGAACATGTGCTAACGCGGAACGACAAGAAAAACCTGTCGTTTTCGCAGAAGGAAAAGAGGAAAAGAGAGCTTGGTCAGGCAAGCAGGGGAAAGAACTATGTTGAAGAAGAGAAGAGGTTGTTGAGGGAGAGTGGTGTTTACTCTGGTTTTGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

9.08

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 263
AccII CGCG 1 cut(s) 403
AciI CCGC 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 391
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 178, 491
AluBI AGCT 3 cut(s) 92, 385, 457
AluI AGCT 3 cut(s) 92, 385, 457
AlwNI CAGNNNCTG 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 100, 200, 369
ApeKI GCWGC 2 cut(s) 362, 382
AsiGI ACCGGT 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 222
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 349, 394
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 376
BfaI CTAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 363, 383
BlpI GCTNAGC 1 cut(s) 212
BlsI GCNGC 2 cut(s) 364, 384
Bme1390I CCNGG 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 246, 304
BmrFI CCNGG 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 17, 375
BsaWI WCCGGW 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 17, 375
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 349, 394
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 403
BshFI GGCC 3 cut(s) 102, 202, 371
BshTI ACCGGT 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 267, 375
BsnI GGCC 3 cut(s) 102, 202, 371
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 222, 237
Bsp1720I GCTNAGC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 403
BspANI GGCC 3 cut(s) 102, 202, 371
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 246, 304
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 17, 375
BssT1I CCWWGG 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 489, 494
BstC8I GCNNGC 2 cut(s) 218, 469
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 3 cut(s) 208, 217, 368
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 349, 394
BstV2I GAAGAC 1 cut(s) 359
BsuRI GGCC 3 cut(s) 102, 202, 371
BtgI CCRYGG 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 218, 469
CaiI CAGNNNCTG 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 190
CspAI ACCGGT 1 cut(s) 266
CviAII CATG 2 cut(s) 18, 392
CviJI RGCY 9 cut(s) 92, 102, 202, 235, 247, 362, 371, 385, 457
CviKI_1 RGCY 9 cut(s) 92, 102, 202, 235, 247, 362, 371, 385, 457
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 489, 494
EarI CTCTTC 2 cut(s) 489, 494
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 21, 395
FaiI YATR 5 cut(s) 19, 186, 339, 393, 486
FatI CATG 2 cut(s) 17, 391
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 363, 383
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 363, 383
FspBI CTAG 1 cut(s) 386
GluI GCNGC 2 cut(s) 363, 383
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 3 cut(s) 102, 202, 371
HapII CCGG 2 cut(s) 267, 375
HgaI GACGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 21, 395
HinfI GANTC 4 cut(s) 35, 44, 56, 332
HpaII CCGG 2 cut(s) 267, 375
Hpy166II GTNNAC 3 cut(s) 163, 264, 526
Hpy188I TCNGA 3 cut(s) 43, 55, 61
Hpy8I GTNNAC 3 cut(s) 163, 264, 526
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 5 cut(s) 56, 235, 304, 314, 430
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 217, 368
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 2 cut(s) 21, 395
LmnI GCTCC 2 cut(s) 244, 379
LpnPI CCDG 9 cut(s) 78, 123, 238, 280, 388, 434, 449, 457, 516
Lsp1109I GCAGC 2 cut(s) 349, 394
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 123
MboII GAAGA 7 cut(s) 16, 338, 341, 364, 503, 506, 511
MhlI GDGCHC 2 cut(s) 222, 237
MlyI GAGTC 1 cut(s) 65
MseI TTAA 1 cut(s) 544
MspI CCGG 2 cut(s) 267, 375
MspR9I CCNGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 3 cut(s) 208, 217, 368
NciI CCSGG 1 cut(s) 376
NcoI CCATGG 1 cut(s) 17
NlaIII CATG 2 cut(s) 21, 395
NlaIV GGNNCC 2 cut(s) 246, 304
NmuCI GTSAC 1 cut(s) 123
NspI RCATGY 1 cut(s) 395
PciI ACATGT 1 cut(s) 391
PfeI GAWTC 3 cut(s) 35, 44, 332
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 2 cut(s) 364, 384
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PscI ACATGT 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 246, 304
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 2 cut(s) 363, 383
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 2 cut(s) 222, 237
SetI ASST 6 cut(s) 94, 199, 387, 423, 459, 506
SsiI CCGC 1 cut(s) 403
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 17
TfiI GAWTC 3 cut(s) 35, 44, 332
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 2 cut(s) 362, 382
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 3 cut(s) 17, 27, 333
XceI RCATGY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.