Rw6G027950

UPF0690 protein C1orf52 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015144
Physical Location & Seq
Reverse (-)
51913861 .. 51914455
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027950.1

Sequence Viewer

Length: 501 bp
ATGAAGAGGACAATGCCATGGAGTGATGACGAGGACGATTCCTCATCCGACGAGGAGTCCGAACCATCACAAGTGAAATCAGGGAAGCCAAAGAGCAAGGTTTTGGATTTCGAGGCGTTGAGGAAACACGGTTACAGAGGAGGACCGTCTATACTGAAGGTGCCTCCGCCCAAGGAGTCCGATAAGGACAAGGACTGGTCTTGGTCGACCGGAGTGGATCACAAGGTGAAGAGTGGAACCACCACCAAGGAGAAGGTGGTGGATGAAGAAGAGAGCAAAGAACAGCGACAGAAGACGAGGGATGCATTGGCCGCCGGGGAGCAGCTGGAGTATGTGATGACCAGGAAGGAGAAGGAGAAGGAGAAGGAGAAAAACTTGTCGTTTTCGCAGAAGGAGAAGAGGAAGAGGGACCTTGGTCAGGCCAGCAGGGGGAAGAACTATGTTGAAGAAGAGAAGAGGTTGCTGAGGGAGAATGGTGTCTACTCTGGGTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.08

Weight (kDa)

7.79

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04614 AT4G04614
fragaria_vesca FvH4_2g23140
malus_domestica MD03G1260500.v1.1 MD11G1280800.v1.1
prunus_persica Prupe.8G236700_v2.0.a1
pyrus_communis pycom11g24860
rosa_chinensis RchiOBHm_Chr6g0290391
rosa_laevigata RLG00000012223
rosa_multiflora Rmu_sc0025482.1_g000002 Rmu_ssc0000094.1_g000002
rosa_roxburghii Rroxscaffold_7G00177110
rosa_rugosa Rorug06G0212300 Rorug06G0212400
rosa_wichuraiana Rw6G027850 Rw6G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccI GTMKAC 2 cut(s) 206, 480
AciI CCGC 2 cut(s) 167, 312
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 418, 429
AgsI TTSAA 1 cut(s) 446
AhdI GACNNNNNGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
AlwI GGATC 1 cut(s) 225
AoxI GGCC 2 cut(s) 309, 420
ApeKI GCWGC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 143, 409
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 2 cut(s) 143, 409
BanI GGYRCC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 299
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 334
BccI CCATC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 1 cut(s) 316
BisI GCNGC 2 cut(s) 312, 323
BlsI GCNGC 2 cut(s) 313, 324
Bme1390I CCNGG 2 cut(s) 316, 343
Bme18I GGWCC 2 cut(s) 143, 409
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 143, 409
BmiI GGNNCC 3 cut(s) 162, 238, 410
BmrFI CCNGG 2 cut(s) 316, 343
BmsI GCATC 2 cut(s) 292, 484
BoxI GACNNNNGTC 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 17, 171, 246, 315, 412
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 429
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 5 cut(s) 17, 171, 246, 315, 412
BseGI GGATG 3 cut(s) 44, 268, 307
BseLI CCNNNNNNNGG 2 cut(s) 418, 429
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 68, 153
BseXI GCAGC 1 cut(s) 334
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 311, 422
BshNI GGYRCC 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 210, 315
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 418, 429
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 2 cut(s) 311, 422
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 2 cut(s) 167, 312
BspANI GGCC 2 cut(s) 311, 422
BspCNI CTCAG 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 162, 238, 410
BspPI GGATC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 5 cut(s) 17, 171, 246, 315, 412
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 4 cut(s) 17, 171, 246, 412
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 131, 147
Bst6I CTCTTC 6 cut(s) 224, 264, 392, 398, 444, 449
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 2 cut(s) 464, 498
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 3 cut(s) 44, 268, 307
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 314, 341
BstV1I GCAGC 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 311, 422
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 44, 268, 307
Cac8I GCNNGC 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 143, 409
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 88, 311, 325, 422
CviKI_1 RGCY 4 cut(s) 88, 311, 325, 422
DdeI CTNAG 2 cut(s) 464, 498
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DraIII CACNNNGTG 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 6 cut(s) 224, 264, 392, 398, 444, 449
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 6 cut(s) 224, 264, 392, 398, 444, 449
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 4 cut(s) 17, 171, 246, 412
Eco47I GGWCC 2 cut(s) 143, 409
Eco57I CTGAAG 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 4 cut(s) 17, 171, 246, 412
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 4 cut(s) 17, 171, 246, 412
FaeI CATG 1 cut(s) 21
FaiI YATR 4 cut(s) 19, 152, 333, 441
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 17
FblI GTMKAC 2 cut(s) 206, 480
Fnu4HI GCNGC 2 cut(s) 312, 323
FokI GGATG 3 cut(s) 31, 275, 314
Fsp4HI GCNGC 2 cut(s) 312, 323
GluI GCNGC 2 cut(s) 312, 323
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 2 cut(s) 311, 422
HapII CCGG 2 cut(s) 210, 315
Hin1II CATG 1 cut(s) 21
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 3 cut(s) 38, 56, 176
HpaII CCGG 2 cut(s) 210, 315
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 207, 481
Hpy188I TCNGA 3 cut(s) 49, 61, 181
Hpy8I GTNNAC 2 cut(s) 207, 481
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 7 cut(s) 151, 247, 340, 346, 352, 358, 385
HpyCH4III ACNGT 2 cut(s) 131, 147
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 464, 498
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 292, 484
MaeIII GTNAC 1 cut(s) 131
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MlyI GAGTC 2 cut(s) 65, 185
MmeI TCCRAC 1 cut(s) 72
Mph1103I ATGCAT 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 2 cut(s) 210, 315
MspR9I CCNGG 2 cut(s) 316, 343
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 316
NcoI CCATGG 1 cut(s) 17
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 162, 238, 410
NsiI ATGCAT 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 313, 324
PleI GAGTC 2 cut(s) 64, 184
PpsI GAGTC 2 cut(s) 64, 184
PpuMI RGGWCCY 1 cut(s) 409
PshAI GACNNNNGTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 3 cut(s) 162, 238, 410
PspPI GGNCC 2 cut(s) 143, 409
PspPPI RGGWCCY 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 325
SalI GTCGAC 1 cut(s) 205
SatI GCNGC 2 cut(s) 312, 323
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 2 cut(s) 143, 409
SchI GAGTC 2 cut(s) 65, 185
ScrFI CCNGG 2 cut(s) 316, 343
SetI ASST 7 cut(s) 102, 162, 228, 258, 327, 414, 461
SfaNI GCATC 2 cut(s) 292, 484
SinI GGWCC 2 cut(s) 143, 409
SsiI CCGC 2 cut(s) 167, 312
StyD4I CCNGG 2 cut(s) 314, 341
StyI CCWWGG 4 cut(s) 17, 171, 246, 412
TaaI ACNGT 2 cut(s) 131, 147
TaqI TCGA 2 cut(s) 111, 206
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 38
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 17, 279
VpaK11BI GGWCC 2 cut(s) 143, 409
XagI CCTNNNNNAGG 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 206, 480
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.