FvH4_2g23920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016760
Physical Location & Seq
Forward (+)
19556541 .. 19561245
4705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23920.t1

Sequence Viewer

Length: 2799 bp
ATGAAGCTACAAATGGACTCGATTTTGAACTCATCCTTGGAACAAATCTGCTCCGAAGGTCCAAACGGTCTCCTCCTCCAAACCCTCTCCTCCAGACTCAACCTCTCTCCGCCACTCCAACAACCCCTATGGGCGGCGCTACTCTCCATCCCCTCCCTCAAATTCCACACCCAAAACCAAAACGCCACCGTTTCGCACCTCCCAACCGACCCTTCAATCCAGTCCTTCCGAGACGCCGAGAATCTCAACCTGAAGCTCGTCGCAGACCAGCCTCTCCGCAACAACTTCCTCGGCCTCTACGACGTCCGGTCCGCCGCCGACGCCATGTGCGCGTACCAACGCAAAACCCTAGAGCGCGTGGCCGCGGCTGGGTCAAAGGGGATCACGCAGAGTCAACTCTCCAAGGAGCTTGGGATTAGAGGTGAGAATTTCTTTTACAAATTGAGGAGGCTTGAATGTCAAGGCTTGGTTGTCAAGAAATGCTTGGATGATACCAATTTAGTGTGCTTAAATCGTTACGCAAAGCATTTAGGTTTAGGGTTTGAACCACAGAGGGTTGAGGTGAGTAAATGTGAGGGTGAAGAGAGTGAGAGCAAGAAGAGTGGTGGTGATTTTACTGCGGAGCTTCCGATTGAGCATCAGATTTACGAGATGGTTAATGAGGCCGGGTCGAGGGGGGTCATTGTGTTTAAGGTTGCAGAGAGGCTGGGAATTGATAGGAAAGAGAATAGGAAGAGGATTGAGAGTTTGTGCTCCAAGTTTGGGATGATTATGGATAAGGAGAAATGTGGAAAGACTCAAGTGTATCGAGTTTGGGCGCCTGGGAAACGCAATGCTGAATCAGCTAATGAGATTCAGAATGAGTCAGAATGTGTTGGTCGAAGTAAGTTTACTGAAGATGTTCTTGATGGGTCTGTTCAGAAAGGTGATACTGCAATGGCAACAGCCACAAATGATGTCTCGTCAGGAATGCCACCTGCTGCGGAATGTGCCAGGCCTAGAAGGGGAAAAGGTGTACTAGAACCATCGCAGGATAAAGGGGATCAACTTCAATCTCAGGGATTTAAAAGCCCTTTGCAGAAAAGGAAGAGATCTTCTGAAGCAGCATCTATAGAGTTTATAGAAGTTGATGGCATAACTGAGCACCAACCTGGATCAAATGAAGATGGTGAGGAGGGGTGTGCTTTTTCAAAGTCAAAATCACCAAGGTTTTTATGGACAGAGGAGGCTGATAGGCAGTTAGTAATCCAATATGTAAGACGTTGTGCAACTCTTGGGGCAAAATATCATCACCATATAAATTGGAGTTCACTTCCAGACCTTCCAGCGCCTGCAAGTACCTGCAAAAGAAGAATGTCATATCTAAAGATCAGTAATGGAAAATTTAGAAAATCTTTGATGAGACTGTGTAACATGCTCAGTAAACGGTATGCAAAGCTCCGGCAGAAAAGCCAGAACAGGTCATTTAACCAAGATGATTGCGGATCACTTTTTCAAGATTCAACAGAGGAGGGTTGTAACCAGAATTATCCTCTCAGTGACCATGGGACAGGTCTCCAGGAAGAACCATGGGATCACTTTAATGACAAAAATATTAAAGAAGTGCTTGAGGAGATACTTCATTATGTGAGGTCGACTAAGTCTGTTGCCTCCAAAACATATGGAGCTTCCTGTAGGGAGGGGTCAGATCTTAATGCTAATGCTGAAGAAGATGTTGAAGGCAGTGATAGTGAATCTTTGTCTCTCTCACCTCAGGTCTTCCCCAATATTTGCAAGTCACCATTTCCAACTGATTCAGGCAAGAGAGCTGCCAAATTTGCTCATTGGCTCCACAAAAGAGATAGAGATCTACTGGGGAGGGGGATTGATCTTCCAACAGAAATACAGTGTGGTGACCTCTTTCATTTGTTTGCTTTAGTTTCTTCAGGTGAATTGTCAATCTCCCCATGCTTGCCAGATGGAGTGAGAGAAGCAGAAGATTTGAGAAGCTCAAAACAGAAAATTGGTAGGAATGAACATCTGAATGCTAAAAGATTAAAATCCTTGGTAGCAGAAAGTGAGATTATTTCCCGTCGAGAAAAAGGTTTCCCGGGTCTTATGGTATCTGTATATCGTCCGGCATCTTCTAAACTTGATTGTGATGATTTGTTCAAAGATGAAGAACATTTTGGTGGGAATCATCAAGACTCTTCAGCCCAGAATCAGATTAGAGAAATCCTCAATCCAGGCATCGTTACCCCAGTAACAGAGAATTGTAGAGAGTCACCTGACAAAGGTATCCTCCATCCAGGAAGTTGCTATATTGGCGGCGCTCCGAATGTTAATGATGCACATATTCTTATTTCTCCTAAAGAGGTTGCTGCATGCCCATCTGAAAAACTAACTAACAGTGTGGAAGGCAAAGACATCTCACCTAGAAGAGATTTTGATAAATATTCTAGATGCTCTTCTGATAATTCGTTTGCACCTCGTCTTCCTTGGATAAATGTGGACGGGACTATCAACAAGACCATGTACGAGGGGCTCAGTCGACGTGTTTTCGGGATTGTGATGCAAAATCCCGGTATATTGGAGGGTGAACTTATCCATAAGATGGATGGACTGAGTCTGCAAAGCTGTAAAAAATTGTTGGCGGAGATGATTGAGGCAAAATATCTTCACATCAGGACAATGCGTCAAGCCACAACCAATGGCCCCCCAGCATTTCTAGGGACCCTCTCCGGAACCAGCCTCACCCATTCAAAGGTGGTTTTCTGTAAGCATCTCTTTGCAAATTCCATGAATTCATTCTTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B-block_TFIIIC

Protein Analysis

933

Amino Acids

103.65

Weight (kDa)

7.86

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_GTF3C1_N PF23704 5 - 100 7.6e-25 General transcription factor 3C polypeptide 1, winged-helix domain
B-block_TFIIIC PF04182 112 - 175 2.6e-10 B-block binding subunit of TFIIIC
HTH_micro PF17007 128 - 289 7.8e-07 HTH-like
DUF7646 PF24657 205 - 280 2.9e-28 Domain of unknown function (DUF7646)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016760)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23920 FvH4_2g23920
malus_domestica MD11G1308600.v1.1
prunus_persica Prupe.8G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291551
rosa_laevigata RLG00000012108
rosa_multiflora Rmu_sc0002226.1_g000002
rosa_roxburghii Rroxscaffold_7G00175980
rosa_rugosa Rorug06G0220200
rosa_samantha Rh6AG332400 Rh6BG339300 Rh6CG345600 Rh6DG332900
rosa_wichuraiana Rw6G028870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 985
AatII GACGTC 1 cut(s) 306
Acc36I ACCTGC 2 cut(s) 985, 1349
AccB1I GGYRCC 1 cut(s) 817
AccB7I CCANNNNNTGG 1 cut(s) 2593
AccI GTMKAC 2 cut(s) 1634, 2530
AccII CGCG 3 cut(s) 332, 357, 365
AccIII TCCGGA 1 cut(s) 2720
AclWI GGATC 5 cut(s) 389, 1050, 1162, 1492, 1581
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 6 cut(s) 161, 427, 1382, 1814, 2773, 2782
AcuI CTGAAG 6 cut(s) 272, 915, 1119, 1725, 1908, 2175
AcyI GRCGYC 4 cut(s) 234, 303, 321, 818
AfaI GTAC 4 cut(s) 335, 1017, 1339, 2516
AfiI CCNNNNNNNGG 8 cut(s) 133, 369, 672, 762, 1004, 2273, 2593, 2743
AflIII ACRYGT 1 cut(s) 2533
AhdI GACNNNNNGTC 2 cut(s) 307, 2673
AjiI CACGTC 1 cut(s) 2534
AjnI CCWGG 6 cut(s) 820, 992, 1150, 1557, 2224, 2287
AjuI GAANNNNNNNTTGG 6 cut(s) 20, 52, 196, 228, 2151, 2183
Alw21I GWGCWC 2 cut(s) 755, 1146
Alw26I GTCTC 6 cut(s) 74, 225, 964, 1396, 1559, 1746
AlwI GGATC 5 cut(s) 389, 1050, 1162, 1492, 1581
AlwNI CAGNNNCTG 1 cut(s) 1331
Ama87I CYCGRG 1 cut(s) 2089
Aor13HI TCCGGA 1 cut(s) 2720
AoxI GGCC 5 cut(s) 292, 360, 663, 995, 2692
ApeKI GCWGC 4 cut(s) 980, 1103, 1808, 2360
ApoI RAATTY 6 cut(s) 161, 427, 1382, 1814, 2773, 2782
Asp700I GAANNNNTTC 2 cut(s) 900, 2786
AspLEI GCGC 6 cut(s) 139, 332, 357, 820, 1330, 2312
AspS9I GGNCC 4 cut(s) 59, 309, 2693, 2712
AsuC2I CCSGG 4 cut(s) 667, 2090, 2091, 2562
AvaI CYCGRG 1 cut(s) 2089
AvaII GGWCC 3 cut(s) 59, 309, 2712
AxyI CCTNAGG 1 cut(s) 1752
BaeI ACNNNNGTAYC 2 cut(s) 2260, 2293
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 2526
BarI GAAGNNNNNNTAC 2 cut(s) 874, 906
BbsI GAAGAC 2 cut(s) 1750, 2465
Bbv12I GWGCWC 2 cut(s) 755, 1146
BbvI GCAGC 4 cut(s) 967, 1115, 1795, 2347
BciT130I CCWGG 6 cut(s) 822, 994, 1152, 1559, 2226, 2289
BciVI GTATCC 1 cut(s) 2288
BcnI CCSGG 4 cut(s) 667, 2090, 2091, 2562
BcoDI GTCTC 6 cut(s) 74, 225, 964, 1396, 1559, 1746
BfaI CTAG 6 cut(s) 350, 999, 1019, 2415, 2439, 2708
BfmI CTRYAG 3 cut(s) 1110, 1672, 2795
BfoI RGCGCY 4 cut(s) 140, 821, 1331, 2313
BfuAI ACCTGC 2 cut(s) 985, 1349
BfuI GTATCC 1 cut(s) 2288
BglII AGATCT 3 cut(s) 1091, 1687, 1846
BisI GCNGC 9 cut(s) 135, 315, 363, 366, 981, 1104, 1809, 2308, 2361
BlsI GCNGC 9 cut(s) 136, 316, 364, 367, 982, 1105, 1810, 2309, 2362
Bme18I GGWCC 3 cut(s) 59, 309, 2712
BmeRI GACNNNNNGTC 2 cut(s) 307, 2673
BmeT110I CYCGRG 1 cut(s) 2089
BmgBI CACGTC 1 cut(s) 2534
BmgT120I GGNCC 4 cut(s) 59, 309, 2693, 2712
BmiI GGNNCC 6 cut(s) 819, 1829, 2695, 2713, 2714, 2725
BmrI ACTGGG 2 cut(s) 1862, 2234
BmsI GCATC 8 cut(s) 646, 1115, 2129, 2238, 2317, 2432, 2541, 2770
BmuI ACTGGG 2 cut(s) 1862, 2234
BpiI GAAGAC 2 cut(s) 1750, 2465
BplI GAGNNNNNCTC 2 cut(s) 2202, 2234
BpmI CTGGAG 2 cut(s) 76, 1541
BpuEI CTTGAG 2 cut(s) 783, 1628
BpuMI CCSGG 4 cut(s) 667, 2090, 2091, 2562
BsaBI GATNNNNATC 2 cut(s) 1845, 2038
BsaHI GRCGYC 4 cut(s) 234, 303, 321, 818
BsaI GGTCTC 2 cut(s) 74, 1559
BsaWI WCCGGW 2 cut(s) 306, 2720
Bsc4I CCNNNNNNNGG 8 cut(s) 133, 369, 672, 762, 1004, 2273, 2593, 2743
Bse1I ACTGG 3 cut(s) 220, 1857, 2240
Bse21I CCTNAGG 1 cut(s) 1752
Bse3DI GCAATG 2 cut(s) 838, 942
Bse8I GATNNNNATC 2 cut(s) 1845, 2038
BseAI TCCGGA 1 cut(s) 2720
BseBI CCWGG 6 cut(s) 822, 994, 1152, 1559, 2226, 2289
BseGI GGATG 6 cut(s) 32, 147, 493, 771, 2284, 2602
BseJI GATNNNNATC 2 cut(s) 1845, 2038
BseLI CCNNNNNNNGG 8 cut(s) 133, 369, 672, 762, 1004, 2273, 2593, 2743
BseMI GCAATG 2 cut(s) 838, 942
BseMII CTCAG 7 cut(s) 1070, 1131, 1432, 1549, 1766, 2539, 2594
BseNI ACTGG 3 cut(s) 220, 1857, 2240
BseRI GAGGAG 8 cut(s) 62, 65, 79, 460, 1187, 1238, 1523, 1625
BseXI GCAGC 4 cut(s) 967, 1115, 1795, 2347
BseYI CCCAGC 3 cut(s) 368, 706, 2698
Bsh1236I CGCG 3 cut(s) 332, 357, 365
BshFI GGCC 5 cut(s) 294, 362, 665, 997, 2694
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 2 cut(s) 755, 1146
BsiHKCI CYCGRG 1 cut(s) 2089
BsiSI CCGG 7 cut(s) 307, 666, 1441, 2090, 2117, 2562, 2721
BslFI GGGAC 3 cut(s) 1561, 2509, 2725
BslI CCNNNNNNNGG 8 cut(s) 133, 369, 672, 762, 1004, 2273, 2593, 2743
BsmAI GTCTC 6 cut(s) 74, 225, 964, 1396, 1559, 1746
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 3 cut(s) 1561, 2509, 2725
BsmI GAATGC 2 cut(s) 975, 2029
BsnI GGCC 5 cut(s) 294, 362, 665, 997, 2694
Bso31I GGTCTC 2 cut(s) 74, 1559
BsoBI CYCGRG 1 cut(s) 2089
Bsp1286I GDGCHC 3 cut(s) 755, 1146, 2526
Bsp13I TCCGGA 1 cut(s) 2720
Bsp19I CCATGG 2 cut(s) 1543, 1568
BspANI GGCC 5 cut(s) 294, 362, 665, 997, 2694
BspCNI CTCAG 7 cut(s) 1069, 1132, 1431, 1548, 1765, 2538, 2595
BspEI TCCGGA 1 cut(s) 2720
BspFNI CGCG 3 cut(s) 332, 357, 365
BspLI GGNNCC 6 cut(s) 819, 1829, 2695, 2713, 2714, 2725
BspMI ACCTGC 2 cut(s) 985, 1349
BspPI GGATC 5 cut(s) 389, 1050, 1162, 1492, 1581
BspQI GCTCTTC 1 cut(s) 2452
BspT107I GGYRCC 1 cut(s) 817
BspTNI GGTCTC 2 cut(s) 74, 1559
BsrDI GCAATG 2 cut(s) 838, 942
BsrI ACTGG 3 cut(s) 220, 1857, 2240
BssNI GRCGYC 4 cut(s) 234, 303, 321, 818
BssT1I CCWWGG 7 cut(s) 36, 402, 1205, 1543, 1568, 2043, 2477
Bst2UI CCWGG 6 cut(s) 822, 994, 1152, 1559, 2226, 2289
Bst4CI ACNGT 6 cut(s) 68, 190, 1407, 1428, 1887, 2390
Bst6I CTCTTC 7 cut(s) 576, 593, 728, 1082, 2194, 2413, 2452
BstACI GRCGYC 4 cut(s) 234, 303, 321, 818
BstC8I GCNNGC 3 cut(s) 1332, 1952, 2365
BstDEI CTNAG 8 cut(s) 1056, 1140, 1418, 1535, 1638, 1752, 2525, 2603
BstDSI CCRYGG 3 cut(s) 363, 1543, 1568
BstEII GGTNACC 1 cut(s) 1892
BstENI CCTNNNNNAGG 1 cut(s) 2271
BstF5I GGATG 6 cut(s) 32, 147, 493, 771, 2284, 2602
BstFNI CGCG 3 cut(s) 332, 357, 365
BstH2I RGCGCY 4 cut(s) 140, 821, 1331, 2313
BstHHI GCGC 6 cut(s) 139, 332, 357, 820, 1330, 2312
BstMAI GTCTC 6 cut(s) 74, 225, 964, 1396, 1559, 1746
BstMWI GCNNNNNNNGC 6 cut(s) 320, 329, 842, 989, 1817, 2304
BstNI CCWGG 6 cut(s) 822, 994, 1152, 1559, 2226, 2289
BstNSI RCATGY 2 cut(s) 1417, 2367
BstPI GGTNACC 1 cut(s) 1892
BstSFI CTRYAG 3 cut(s) 1110, 1672, 2795
BstUI CGCG 3 cut(s) 332, 357, 365
BstV1I GCAGC 4 cut(s) 967, 1115, 1795, 2347
BstV2I GAAGAC 2 cut(s) 1750, 2465
BstX2I RGATCY 3 cut(s) 1091, 1687, 1846
BstYI RGATCY 3 cut(s) 1091, 1687, 1846
Bsu36I CCTNAGG 1 cut(s) 1752
BsuI GTATCC 1 cut(s) 2288
BsuRI GGCC 5 cut(s) 294, 362, 665, 997, 2694
BtgI CCRYGG 3 cut(s) 363, 1543, 1568
BtgZI GCGATG 1 cut(s) 1011
BtrI CACGTC 1 cut(s) 2534
BtsCI GGATG 6 cut(s) 32, 147, 493, 771, 2284, 2602
BtsI GCAGTG 1 cut(s) 1729
BtsIMutI CAGTG 4 cut(s) 1543, 1729, 1892, 2395
BveI ACCTGC 2 cut(s) 985, 1349
Cac8I GCNNGC 3 cut(s) 1332, 1952, 2365
CaiI CAGNNNCTG 1 cut(s) 1331
CfoI GCGC 6 cut(s) 139, 332, 357, 820, 1330, 2312
Cfr13I GGNCC 4 cut(s) 59, 309, 2693, 2712
Cfr42I CCGCGG 1 cut(s) 366
Cfr9I CCCGGG 1 cut(s) 2089
CpoI CGGWCCG 1 cut(s) 309
CseI GACGC 3 cut(s) 242, 329, 2663
Csp6I GTAC 4 cut(s) 334, 1016, 1338, 2515
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CspI CGGWCCG 1 cut(s) 309
CviAII CATG 8 cut(s) 325, 1414, 1544, 1569, 1947, 2364, 2512, 2779
CviQI GTAC 4 cut(s) 334, 1016, 1338, 2515
DdeI CTNAG 8 cut(s) 1056, 1140, 1418, 1535, 1638, 1752, 2525, 2603
DinI GGCGCC 1 cut(s) 819
DraI TTTAAA 1 cut(s) 1066
DriI GACNNNNNGTC 2 cut(s) 307, 2673
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 7 cut(s) 576, 593, 728, 1082, 2194, 2413, 2452
Eam1105I GACNNNNNGTC 2 cut(s) 307, 2673
EarI CTCTTC 7 cut(s) 576, 593, 728, 1082, 2194, 2413, 2452
EciI GGCGGA 3 cut(s) 99, 301, 2648
Eco130I CCWWGG 7 cut(s) 36, 402, 1205, 1543, 1568, 2043, 2477
Eco147I AGGCCT 1 cut(s) 997
Eco24I GRGCYC 1 cut(s) 2526
Eco31I GGTCTC 2 cut(s) 74, 1559
Eco47I GGWCC 3 cut(s) 59, 309, 2712
Eco57I CTGAAG 6 cut(s) 272, 915, 1119, 1725, 1908, 2175
Eco81I CCTNAGG 1 cut(s) 1752
Eco88I CYCGRG 1 cut(s) 2089
Eco91I GGTNACC 1 cut(s) 1892
EcoNI CCTNNNNNAGG 1 cut(s) 2271
EcoO109I RGGNCCY 1 cut(s) 2712
EcoO65I GGTNACC 1 cut(s) 1892
EcoRI GAATTC 1 cut(s) 2782
EcoRII CCWGG 6 cut(s) 820, 992, 1150, 1557, 2224, 2287
EcoT14I CCWWGG 7 cut(s) 36, 402, 1205, 1543, 1568, 2043, 2477
EcoT38I GRGCYC 1 cut(s) 2526
EgeI GGCGCC 1 cut(s) 819
EheI GGCGCC 1 cut(s) 819
ErhI CCWWGG 7 cut(s) 36, 402, 1205, 1543, 1568, 2043, 2477
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 8 cut(s) 328, 1417, 1547, 1572, 1950, 2367, 2515, 2782
FalI AAGNNNNNCTT 8 cut(s) 467, 499, 888, 920, 1590, 1622, 2750, 2782
FaqI GGGAC 3 cut(s) 1561, 2509, 2725
FatI CATG 8 cut(s) 324, 1413, 1543, 1568, 1946, 2363, 2511, 2778
FauNDI CATATG 1 cut(s) 1660
FblI GTMKAC 2 cut(s) 1634, 2530
Fnu4HI GCNGC 9 cut(s) 135, 315, 363, 366, 981, 1104, 1809, 2308, 2361
FokI GGATG 6 cut(s) 19, 134, 500, 778, 2271, 2609
FriOI GRGCYC 1 cut(s) 2526
Fsp4HI GCNGC 9 cut(s) 135, 315, 363, 366, 981, 1104, 1809, 2308, 2361
FspBI CTAG 6 cut(s) 350, 999, 1019, 2415, 2439, 2708
GlaI GCGC 6 cut(s) 138, 331, 356, 819, 1329, 2311
GluI GCNGC 9 cut(s) 135, 315, 363, 366, 981, 1104, 1809, 2308, 2361
GsaI CCCAGC 3 cut(s) 372, 710, 2702
GsuI CTGGAG 2 cut(s) 76, 1541
HaeII RGCGCY 4 cut(s) 140, 821, 1331, 2313
HaeIII GGCC 5 cut(s) 294, 362, 665, 997, 2694
HapII CCGG 7 cut(s) 307, 666, 1441, 2090, 2117, 2562, 2721
HgaI GACGC 3 cut(s) 242, 329, 2663
HhaI GCGC 6 cut(s) 139, 332, 357, 820, 1330, 2312
Hin1I GRCGYC 4 cut(s) 234, 303, 321, 818
Hin1II CATG 8 cut(s) 328, 1417, 1547, 1572, 1950, 2367, 2515, 2782
Hin6I GCGC 6 cut(s) 137, 330, 355, 818, 1328, 2310
HinP1I GCGC 6 cut(s) 137, 330, 355, 818, 1328, 2310
HincII GTYRAC 3 cut(s) 395, 1635, 2531
HindII GTYRAC 3 cut(s) 395, 1635, 2531
HpaII CCGG 7 cut(s) 307, 666, 1441, 2090, 2117, 2562, 2721
Hpy166II GTNNAC 9 cut(s) 395, 891, 1016, 1310, 1424, 1635, 2491, 2531, 2579
Hpy8I GTNNAC 9 cut(s) 395, 891, 1016, 1310, 1424, 1635, 2491, 2531, 2579
Hpy99I CGWCG 5 cut(s) 263, 305, 323, 2076, 2535
HpyAV CCTTC 7 cut(s) 50, 222, 235, 996, 1331, 1712, 2390
HpyCH4III ACNGT 6 cut(s) 68, 190, 1407, 1428, 1887, 2390
HpyCH4IV ACGT 3 cut(s) 303, 1261, 2533
HpyF10VI GCNNNNNNNGC 6 cut(s) 320, 329, 842, 989, 1817, 2304
HpyF3I CTNAG 8 cut(s) 1056, 1140, 1418, 1535, 1638, 1752, 2525, 2603
HpySE526I ACGT 3 cut(s) 303, 1261, 2533
Hsp92I GRCGYC 4 cut(s) 234, 303, 321, 818
Hsp92II CATG 8 cut(s) 328, 1417, 1547, 1572, 1950, 2367, 2515, 2782
HspAI GCGC 6 cut(s) 137, 330, 355, 818, 1328, 2310
KasI GGCGCC 1 cut(s) 817
KflI GGGWCCC 1 cut(s) 2712
Kpn2I TCCGGA 1 cut(s) 2720
KspI CCGCGG 1 cut(s) 366
LguI GCTCTTC 1 cut(s) 2452
LmnI GCTCC 8 cut(s) 56, 406, 622, 758, 1443, 1664, 1833, 2317
Lsp1109I GCAGC 4 cut(s) 967, 1115, 1795, 2347
LweI GCATC 8 cut(s) 646, 1115, 2129, 2238, 2317, 2432, 2541, 2770
MaeI CTAG 6 cut(s) 350, 999, 1019, 2415, 2439, 2708
MaeII ACGT 3 cut(s) 303, 1261, 2533
MaeIII GTNAC 9 cut(s) 515, 1409, 1517, 1538, 1776, 1892, 2233, 2242, 2262
MflI RGATCY 3 cut(s) 1091, 1687, 1846
MhlI GDGCHC 3 cut(s) 755, 1146, 2526
Mly113I GGCGCC 1 cut(s) 818
MlyI GAGTC 8 cut(s) 11, 90, 400, 790, 872, 2180, 2270, 2614
MmeI TCCRAC 3 cut(s) 142, 1811, 1898
MroI TCCGGA 1 cut(s) 2720
MroXI GAANNNNTTC 2 cut(s) 900, 2786
MslI CAYNNNNRTG 3 cut(s) 1581, 2022, 2169
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 7 cut(s) 307, 666, 1441, 2090, 2117, 2562, 2721
Mva1269I GAATGC 2 cut(s) 975, 2029
MvaI CCWGG 6 cut(s) 822, 994, 1152, 1559, 2226, 2289
MvnI CGCG 3 cut(s) 332, 357, 365
MwoI GCNNNNNNNGC 6 cut(s) 320, 329, 842, 989, 1817, 2304
NarI GGCGCC 1 cut(s) 818
NciI CCSGG 4 cut(s) 667, 2090, 2091, 2562
NcoI CCATGG 2 cut(s) 1543, 1568
NdeI CATATG 1 cut(s) 1660
NlaIII CATG 8 cut(s) 328, 1417, 1547, 1572, 1950, 2367, 2515, 2782
NlaIV GGNNCC 6 cut(s) 819, 1829, 2695, 2713, 2714, 2725
NmeAIII GCCGAG 2 cut(s) 262, 270
NmuCI GTSAC 4 cut(s) 1538, 1776, 1892, 2262
NspI RCATGY 2 cut(s) 1417, 2367
PaeI GCATGC 1 cut(s) 2367
PaqCI CACCTGC 1 cut(s) 985
PceI AGGCCT 1 cut(s) 997
PciSI GCTCTTC 1 cut(s) 2452
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 2 cut(s) 975, 2029
PdmI GAANNNNTTC 2 cut(s) 900, 2786
PfeI GAWTC 8 cut(s) 241, 839, 853, 1499, 1733, 1793, 2176, 2200
PflFI GACNNNGTC 2 cut(s) 1639, 2604
PflMI CCANNNNNTGG 1 cut(s) 2593
PfoI TCCNGGA 2 cut(s) 1557, 2287
PkrI GCNGC 9 cut(s) 136, 316, 364, 367, 982, 1105, 1810, 2309, 2362
PleI GAGTC 8 cut(s) 11, 90, 399, 790, 871, 2180, 2269, 2613
PluTI GGCGCC 1 cut(s) 821
PpsI GAGTC 8 cut(s) 11, 90, 399, 790, 871, 2180, 2269, 2613
PpuMI RGGWCCY 1 cut(s) 2712
Psp5II RGGWCCY 1 cut(s) 2712
Psp6I CCWGG 6 cut(s) 820, 992, 1150, 1557, 2224, 2287
PspEI GGTNACC 1 cut(s) 1892
PspFI CCCAGC 3 cut(s) 368, 706, 2698
PspGI CCWGG 6 cut(s) 820, 992, 1150, 1557, 2224, 2287
PspN4I GGNNCC 6 cut(s) 819, 1829, 2695, 2713, 2714, 2725
PspPI GGNCC 4 cut(s) 59, 309, 2693, 2712
PspPPI RGGWCCY 1 cut(s) 2712
PstNI CAGNNNCTG 1 cut(s) 1331
PsuI RGATCY 3 cut(s) 1091, 1687, 1846
PsyI GACNNNGTC 2 cut(s) 1639, 2604
RsaI GTAC 4 cut(s) 335, 1017, 1339, 2516
RsaNI GTAC 4 cut(s) 334, 1016, 1338, 2515
RseI CAYNNNNRTG 3 cut(s) 1581, 2022, 2169
Rsr2I CGGWCCG 1 cut(s) 309
RsrII CGGWCCG 1 cut(s) 309
SacII CCGCGG 1 cut(s) 366
SalI GTCGAC 2 cut(s) 1633, 2529
SapI GCTCTTC 1 cut(s) 2452
SatI GCNGC 9 cut(s) 135, 315, 363, 366, 981, 1104, 1809, 2308, 2361
Sau96I GGNCC 4 cut(s) 59, 309, 2693, 2712
SchI GAGTC 8 cut(s) 11, 90, 400, 790, 872, 2180, 2270, 2614
SduI GDGCHC 3 cut(s) 755, 1146, 2526
SfaNI GCATC 8 cut(s) 646, 1115, 2129, 2238, 2317, 2432, 2541, 2770
SfcI CTRYAG 3 cut(s) 1110, 1672, 2795
SfoI GGCGCC 1 cut(s) 819
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 3 cut(s) 59, 309, 2712
SmaI CCCGGG 1 cut(s) 2091
SmiMI CAYNNNNRTG 3 cut(s) 1581, 2022, 2169
SmlI CTYRAG 2 cut(s) 798, 1607
SmoI CTYRAG 2 cut(s) 798, 1607
SphI GCATGC 1 cut(s) 2367
SseBI AGGCCT 1 cut(s) 997
SspDI GGCGCC 1 cut(s) 817
SspI AATATT 3 cut(s) 1594, 1768, 2435
SspMI CTAG 6 cut(s) 350, 999, 1019, 2415, 2439, 2708
StuI AGGCCT 1 cut(s) 997
StyI CCWWGG 7 cut(s) 36, 402, 1205, 1543, 1568, 2043, 2477
TaaI ACNGT 6 cut(s) 68, 190, 1407, 1428, 1887, 2390
TaiI ACGT 3 cut(s) 306, 1264, 2536
TaqI TCGA 7 cut(s) 20, 671, 808, 880, 1634, 2074, 2530
TatI WGTACW 1 cut(s) 1015
TauI GCSGC 5 cut(s) 137, 317, 365, 368, 2310
TfiI GAWTC 8 cut(s) 241, 839, 853, 1499, 1733, 1793, 2176, 2200
TscAI CASTG 4 cut(s) 1543, 1729, 1892, 2395
TseFI GTSAC 4 cut(s) 1538, 1776, 1892, 2262
TseI GCWGC 4 cut(s) 980, 1103, 1808, 2360
Tsp45I GTSAC 4 cut(s) 1538, 1776, 1892, 2262
TspDTI ATGAA 8 cut(s) 17, 1176, 1610, 1892, 2028, 2172, 2775, 2795
TspMI CCCGGG 1 cut(s) 2089
TspRI CASTG 4 cut(s) 1543, 1729, 1892, 2395
Tth111I GACNNNGTC 2 cut(s) 1639, 2604
Van91I CCANNNNNTGG 1 cut(s) 2593
VpaK11BI GGWCC 3 cut(s) 59, 309, 2712
XagI CCTNNNNNAGG 1 cut(s) 2271
XapI RAATTY 6 cut(s) 161, 427, 1382, 1814, 2773, 2782
XbaI TCTAGA 1 cut(s) 2438
XceI RCATGY 2 cut(s) 1417, 2367
XcmI CCANNNNNNNNNTGG 2 cut(s) 1212, 2594
XmaI CCCGGG 1 cut(s) 2089
XmiI GTMKAC 2 cut(s) 1634, 2530
XmnI GAANNNNTTC 2 cut(s) 900, 2786
XspI CTAG 6 cut(s) 350, 999, 1019, 2415, 2439, 2708
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.